RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 APOBEC3GQ9HC16 384 aaKnown RBP12.26□□□□□ -0.45
USP4-204ENST00000416417 VPS45Q9NRW7 570 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 OSER1Q9NX31 292 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 SH3BP1Q9Y3L3 701 aa12.26□□□□□ -0.45
USP4-204ENST00000416417 E2F8A0AVK6 867 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 BCLAF3A2AJT9 711 aaKnown RBP12.25□□□□□ -0.45
USP4-204ENST00000416417 SLC9A3R1O14745 358 aaPredicted RBP12.25□□□□□ -0.45
USP4-204ENST00000416417 CYP26A1O43174 497 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 ADAM23O75077 832 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 RHOBTB1O94844 696 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 ADH1CP00326 375 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 CD58P19256 250 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 KIR2DL1P43626 348 aaPredicted RBP12.25□□□□□ -0.45
USP4-204ENST00000416417 GCLMP48507 274 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 DHPSP49366 369 aaPredicted RBP12.25□□□□□ -0.45
USP4-204ENST00000416417 SGSM1Q2NKQ1 1148 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 ANO4Q32M45 955 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 USP39Q53GS9 565 aaKnown RBP12.25□□□□□ -0.45
USP4-204ENST00000416417 PMS2CLQ68D20 193 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 RNF43Q68DV7 783 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 ATL3Q6DD88 541 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 RASSF3Q86WH2 238 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 SLC9A9Q8IVB4 645 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 PHTF2Q8N3S3 785 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 PDZD8Q8NEN9 1154 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 HMGB4Q8WW32 186 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 EEF2KMTQ96G04 330 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 SPATA32Q96LK8 384 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 EDEM2Q9BV94 578 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 NACA2Q9H009 215 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 IL37Q9NZH6 218 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 HPSEQ9Y251 543 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 PCDHGA5Q9Y5G8 931 aa12.25□□□□□ -0.45
USP4-204ENST00000416417 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 C4orf47A7E2U8 309 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 PDXKO00764 312 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 GIPC1O14908 333 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 ZDHHC11BP0C7U3 371 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 CMA1P23946 247 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 VAMP7P51809 220 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 AP3M2P53677 418 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 MRPS21P82921 87 aaKnown RBP12.24□□□□□ -0.45
USP4-204ENST00000416417 PPP3CAQ08209 521 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 DDX42Q86XP3 938 aaKnown RBP eCLIP12.24□□□□□ -0.45
USP4-204ENST00000416417 MIB1Q86YT6 1006 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 TMEFF1Q8IYR6 380 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 DEFB119Q8N690 84 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 TMC2Q8TDI7 906 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 TAS1R2Q8TE23 839 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 OVCA2Q8WZ82 227 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 BHMTQ93088 406 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 CNOT6LQ96LI5 555 aaKnown RBP12.24□□□□□ -0.45
USP4-204ENST00000416417 GOLPH3LQ9H4A5 285 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 BCCIPQ9P287 314 aaKnown RBP eCLIP12.24□□□□□ -0.45
USP4-204ENST00000416417 HCN2Q9UL51 889 aa12.24□□□□□ -0.45
USP4-204ENST00000416417 ATXN2Q99700 1313 aaKnown RBP12.24□□□□□ -0.45
USP4-204ENST00000416417 MYOFQ9NZM1 2061 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 TCRBV21S2A2A0A5A6 115 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 TBC1D3BA6NDS4 549 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 HHLA1C9JL84 531 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 CALUO43852 315 aaPredicted RBP12.23□□□□□ -0.45
USP4-204ENST00000416417 FOXD2O60548 495 aaPredicted RBP12.23□□□□□ -0.45
USP4-204ENST00000416417 TLR5O60602 858 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 TULP3O75386 442 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 KIF20AO95235 890 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 ASS1P00966 412 aaKnown RBP12.23□□□□□ -0.45
USP4-204ENST00000416417 GRIA2P42262 883 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 SYKP43405 635 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 LIMK1P53667 647 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 GAD2Q05329 585 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 ZNF394Q53GI3 561 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 SNX30Q5VWJ9 437 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 TPGS1Q6ZTW0 290 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 CYP2U1Q7Z449 544 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 ETFBKMTQ8IXQ9 262 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 SMYD4Q8IYR2 804 aaPredicted RBP12.23□□□□□ -0.45
USP4-204ENST00000416417 CRYBG2Q8N1P7 616 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 PGBD3Q8N328 593 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 PIGKQ92643 395 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 NMUR1Q9HB89 426 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 GDPD2Q9HCC8 539 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 CSNK1G1Q9HCP0 422 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 SPHK2Q9NRA0 654 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 TBC1D14Q9P2M4 693 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 MBD1Q9UIS9 605 aaPredicted RBP12.23□□□□□ -0.45
USP4-204ENST00000416417 FRMD4BQ9Y2L6 1034 aa12.23□□□□□ -0.45
USP4-204ENST00000416417 A0A1W2PQH9 124 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 LNP1A1A4G5 178 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 FAM92AA1XBS5 289 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 NEDD8-MDP1E9PL57 170 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 GREM1O60565 184 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 FAM200BP0CF97 657 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 P4HA1P13674 534 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 ACO1P21399 889 aaKnown RBP12.22□□□□□ -0.45
USP4-204ENST00000416417 NR2F2P24468 414 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 IRX4P78413 519 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 C10orf76Q5T2E6 689 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 BTBD8Q5XKL5 378 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 PSAPL1Q6NUJ1 521 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 CLEC20AQ6ZU45 233 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms