RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 C1orf228Q6PIY5 440 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 FAM183BPQ6ZVS7 135 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 PCGF5Q86SE9 256 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 C12orf29Q8N999 325 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 KCTD6Q8NC69 237 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 PCDH19Q8TAB3 1148 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 RTP4Q96DX8 246 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 PGLYRP2Q96PD5 576 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 KRT82Q9NSB4 513 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.28□□□□□ -0.76
SS18-203ENST00000415083 CORO1CQ9ULV4 474 aaPredicted RBP10.28□□□□□ -0.76
SS18-203ENST00000415083 PPME1Q9Y570 386 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.28□□□□□ -0.76
SS18-203ENST00000415083 DCAF8L1A6NGE4 600 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 METTL18O95568 372 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 RBL1P28749 1068 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 CPA2P48052 419 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 TUBB3Q13509 450 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 CMPK2Q5EBM0 449 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 RSAD2Q8WXG1 361 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 TTC17Q96AE7 1141 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 IFT43Q96FT9 208 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 CLPTM1LQ96KA5 538 aa10.28□□□□□ -0.76
SS18-203ENST00000415083 HCRTO43612 131 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 IL1BP01584 269 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 HMGCRP04035 888 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 MYL2P10916 166 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 CD19P15391 556 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 YY1P25490 414 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 ABCD1P33897 745 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 SERPINB4P48594 390 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 OCRLQ01968 901 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 PTPN11Q06124 597 aaPredicted RBP10.27□□□□□ -0.76
SS18-203ENST00000415083 KLHL38Q2WGJ6 581 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 NBPF20Q3BBV1 942 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 MPZL3Q6UWV2 235 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 RNF111Q6ZNA4 994 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 CEP128Q6ZU80 1094 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 APBB1IPQ7Z5R6 666 aaPredicted RBP10.27□□□□□ -0.76
SS18-203ENST00000415083 PALM2Q8IXS6 379 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 ADGRF2Q8IZF7 708 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 C7orf31Q8N865 590 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 DNERQ8NFT8 737 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 SRPK1Q96SB4 655 aaKnown RBP10.27□□□□□ -0.76
SS18-203ENST00000415083 CALN1Q9BXU9 219 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 PPCSQ9HAB8 311 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 PIDD1Q9HB75 910 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 BATF3Q9NR55 127 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 CITO14578 2027 aa10.27□□□□□ -0.76
SS18-203ENST00000415083 SLC15A5A6NIM6 579 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 FCHO1O14526 889 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 LGR5O75473 907 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 TGDSO95455 350 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 ITGB3P05106 788 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 KRT7P08729 469 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 PRKCHP24723 683 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 CCNFP41002 786 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 CLCN3P51790 818 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 ZNF143P52747 638 aaPredicted RBP10.27□□□□□ -0.77
SS18-203ENST00000415083 ZNF200P98182 395 aaPredicted RBP10.27□□□□□ -0.77
SS18-203ENST00000415083 ANGEL2Q5VTE6 544 aaKnown RBP10.27□□□□□ -0.77
SS18-203ENST00000415083 PPP1R2P3Q6NXS1 205 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 LBX2Q6XYB7 198 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 SH3TC2Q8TF17 1288 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 RXFP2Q8WXD0 754 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 MMP19Q99542 508 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 TCHPQ9BT92 498 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 EMCNQ9ULC0 261 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 TRIM49D1C9J1S8 452 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 ADCY6O43306 1168 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 SORBS2O94875 1100 aaKnown RBP10.27□□□□□ -0.77
SS18-203ENST00000415083 AP3M2P53677 418 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 BST1Q10588 318 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 ATF7IP2Q5U623 682 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 MAVSQ7Z434 540 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 NETO2Q8NC67 525 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 CFAP36Q96G28 342 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 SIGLEC10Q96LC7 697 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 ACAP3Q96P50 834 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 RNF157Q96PX1 679 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 CYTH2Q99418 400 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 EBF4Q9BQW3 602 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 PLLPQ9Y342 182 aa10.27□□□□□ -0.77
SS18-203ENST00000415083 SBF1O95248 1867 aa10.26□□□□□ -0.77
SS18-203ENST00000415083 SMAPO00193 183 aa10.26□□□□□ -0.77
SS18-203ENST00000415083 ACKR2O00590 384 aa10.26□□□□□ -0.77
SS18-203ENST00000415083 PPEF2O14830 753 aa10.26□□□□□ -0.77
SS18-203ENST00000415083 LIN7AO14910 233 aaPredicted RBP10.26□□□□□ -0.77
SS18-203ENST00000415083 PDHA1P08559 390 aa10.26□□□□□ -0.77
SS18-203ENST00000415083 MAGEA6P43360 314 aa10.26□□□□□ -0.77
SS18-203ENST00000415083 ERFP50548 548 aa10.26□□□□□ -0.77
SS18-203ENST00000415083 ARFIP2P53365 341 aa10.26□□□□□ -0.77
SS18-203ENST00000415083 TNFAIP1Q13829 316 aa10.26□□□□□ -0.77
SS18-203ENST00000415083 SLC10A6Q3KNW5 377 aa10.26□□□□□ -0.77
SS18-203ENST00000415083 PKDCCQ504Y2 493 aa10.26□□□□□ -0.77
SS18-203ENST00000415083 MDH1BQ5I0G3 518 aa10.26□□□□□ -0.77
SS18-203ENST00000415083 FAM91A1Q658Y4 838 aa10.26□□□□□ -0.77
SS18-203ENST00000415083 UNC5AQ6ZN44 842 aa10.26□□□□□ -0.77
SS18-203ENST00000415083 RFX8Q6ZV50 586 aa10.26□□□□□ -0.77
SS18-203ENST00000415083 TMEM176AQ96HP8 235 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms