RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 IER2Q9BTL4 223 aa20.11■□□□□ 0.81
SF3A1-202ENST00000411423 FBXO44Q9H4M3 255 aa20.11■□□□□ 0.81
SF3A1-202ENST00000411423 LMBRD1Q9NUN5 540 aa20.11■□□□□ 0.81
SF3A1-202ENST00000411423 CXCL12P48061 93 aa20.1■□□□□ 0.81
SF3A1-202ENST00000411423 CCR3P51677 355 aa20.1■□□□□ 0.81
SF3A1-202ENST00000411423 DHCR24Q15392 516 aa20.1■□□□□ 0.81
SF3A1-202ENST00000411423 GOLGA7BQ2TAP0 167 aa20.1■□□□□ 0.81
SF3A1-202ENST00000411423 PIGZQ86VD9 579 aa20.1■□□□□ 0.81
SF3A1-202ENST00000411423 C12orf40Q86WS4 652 aa20.1■□□□□ 0.81
SF3A1-202ENST00000411423 SFTPA1Q8IWL2 248 aa20.1■□□□□ 0.81
SF3A1-202ENST00000411423 TTC39CQ8N584 583 aa20.1■□□□□ 0.81
SF3A1-202ENST00000411423 SUMF1Q8NBK3 374 aa20.1■□□□□ 0.81
SF3A1-202ENST00000411423 TFAP2BQ92481 460 aa20.1■□□□□ 0.81
SF3A1-202ENST00000411423 P2RY13Q9BPV8 354 aa20.1■□□□□ 0.81
SF3A1-202ENST00000411423 CYLDQ9NQC7 956 aa20.1■□□□□ 0.81
SF3A1-202ENST00000411423 TLR8Q9NR97 1041 aaKnown RBP20.1■□□□□ 0.81
SF3A1-202ENST00000411423 ZSCAN32Q9NX65 697 aa20.1■□□□□ 0.81
SF3A1-202ENST00000411423 RWDD2AQ9UIY3 292 aa20.1■□□□□ 0.81
SF3A1-202ENST00000411423 TSPAN16Q9UKR8 245 aa20.1■□□□□ 0.81
SF3A1-202ENST00000411423 KIAA1549LQ6ZVL6 1849 aa20.09■□□□□ 0.81
SF3A1-202ENST00000411423 NFATC1O95644 943 aa20.09■□□□□ 0.81
SF3A1-202ENST00000411423 IRF1P10914 325 aa20.09■□□□□ 0.81
SF3A1-202ENST00000411423 SLC6A11P48066 632 aa20.09■□□□□ 0.81
SF3A1-202ENST00000411423 GRSF1Q12849 480 aaKnown RBP eCLIP20.09■□□□□ 0.81
SF3A1-202ENST00000411423 RAB41Q5JT25 222 aa20.09■□□□□ 0.81
SF3A1-202ENST00000411423 RHBDF2Q6PJF5 856 aa20.09■□□□□ 0.81
SF3A1-202ENST00000411423 RRAGAQ7L523 313 aa20.09■□□□□ 0.81
SF3A1-202ENST00000411423 BHLHA9Q7RTU4 235 aa20.09■□□□□ 0.81
SF3A1-202ENST00000411423 BBS7Q8IWZ6 715 aa20.09■□□□□ 0.81
SF3A1-202ENST00000411423 ANKRD52Q8NB46 1076 aa20.09■□□□□ 0.81
SF3A1-202ENST00000411423 NDRG1Q92597 394 aaKnown RBP20.09■□□□□ 0.81
SF3A1-202ENST00000411423 CD101Q93033 1021 aa20.09■□□□□ 0.81
SF3A1-202ENST00000411423 KREMEN1Q96MU8 473 aa20.09■□□□□ 0.81
SF3A1-202ENST00000411423 NT5C1BQ96P26 610 aa20.09■□□□□ 0.81
SF3A1-202ENST00000411423 KLF16Q9BXK1 252 aaPredicted RBP20.09■□□□□ 0.81
SF3A1-202ENST00000411423 FAM124BQ9H5Z6 455 aaPredicted RBP20.09■□□□□ 0.81
SF3A1-202ENST00000411423 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.09■□□□□ 0.81
SF3A1-202ENST00000411423 E2F8A0AVK6 867 aa20.08■□□□□ 0.81
SF3A1-202ENST00000411423 P4HA2O15460 535 aa20.08■□□□□ 0.81
SF3A1-202ENST00000411423 RNF40O75150 1001 aa20.08■□□□□ 0.81
SF3A1-202ENST00000411423 LMNAP02545 664 aaKnown RBP20.08■□□□□ 0.81
SF3A1-202ENST00000411423 AFPP02771 609 aaKnown RBP20.08■□□□□ 0.81
SF3A1-202ENST00000411423 RARGP13631 454 aa20.08■□□□□ 0.81
SF3A1-202ENST00000411423 TRIM21P19474 475 aaKnown RBP20.08■□□□□ 0.81
SF3A1-202ENST00000411423 PDE4CQ08493 712 aa20.08■□□□□ 0.81
SF3A1-202ENST00000411423 DPCR1Q3MIW9 517 aa20.08■□□□□ 0.81
SF3A1-202ENST00000411423 CCDC186Q7Z3E2 898 aa20.08■□□□□ 0.81
SF3A1-202ENST00000411423 PPM1KQ8N3J5 372 aa20.08■□□□□ 0.81
SF3A1-202ENST00000411423 SYNPOQ8N3V7 929 aa20.08■□□□□ 0.81
SF3A1-202ENST00000411423 KIAA1958Q8N8K9 716 aa20.08■□□□□ 0.81
SF3A1-202ENST00000411423 EHBP1Q8NDI1 1231 aa20.08■□□□□ 0.81
SF3A1-202ENST00000411423 UBA3Q8TBC4 463 aa20.08■□□□□ 0.81
SF3A1-202ENST00000411423 PCDHGA2Q9Y5H1 932 aa20.08■□□□□ 0.81
SF3A1-202ENST00000411423 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.08■□□□□ 0.81
SF3A1-202ENST00000411423 O00370 1275 aa20.07■□□□□ 0.8
SF3A1-202ENST00000411423 GABBR2O75899 941 aa20.07■□□□□ 0.8
SF3A1-202ENST00000411423 PAPSS2O95340 614 aaPredicted RBP20.07■□□□□ 0.8
SF3A1-202ENST00000411423 GNA14O95837 355 aa20.07■□□□□ 0.8
SF3A1-202ENST00000411423 CHRM1P11229 460 aaPredicted RBP20.07■□□□□ 0.8
SF3A1-202ENST00000411423 TBXAS1P24557 533 aaPredicted RBP20.07■□□□□ 0.8
SF3A1-202ENST00000411423 APBA1Q02410 837 aa20.07■□□□□ 0.8
SF3A1-202ENST00000411423 PKDCCQ504Y2 493 aa20.07■□□□□ 0.8
SF3A1-202ENST00000411423 ZC3H14Q6PJT7 736 aaKnown RBP20.07■□□□□ 0.8
SF3A1-202ENST00000411423 TMEM270Q6UE05 265 aa20.07■□□□□ 0.8
SF3A1-202ENST00000411423 DDX42Q86XP3 938 aaKnown RBP eCLIP20.07■□□□□ 0.8
SF3A1-202ENST00000411423 P2RY11Q96G91 374 aa20.07■□□□□ 0.8
SF3A1-202ENST00000411423 CNOT6LQ96LI5 555 aaKnown RBP20.07■□□□□ 0.8
SF3A1-202ENST00000411423 UBXN6Q9BZV1 441 aa20.07■□□□□ 0.8
SF3A1-202ENST00000411423 INTS2Q9H0H0 1204 aaKnown RBP20.07■□□□□ 0.8
SF3A1-202ENST00000411423 ATG2BQ96BY7 2078 aa20.07■□□□□ 0.8
SF3A1-202ENST00000411423 MYOFQ9NZM1 2061 aa20.07■□□□□ 0.8
SF3A1-202ENST00000411423 CHURC1-FNTBB4DL54 471 aa20.06■□□□□ 0.8
SF3A1-202ENST00000411423 K7EQS6 105 aa20.06■□□□□ 0.8
SF3A1-202ENST00000411423 VDRP11473 427 aa20.06■□□□□ 0.8
SF3A1-202ENST00000411423 CD19P15391 556 aa20.06■□□□□ 0.8
SF3A1-202ENST00000411423 DRD1P21728 446 aa20.06■□□□□ 0.8
SF3A1-202ENST00000411423 FNTBP49356 437 aa20.06■□□□□ 0.8
SF3A1-202ENST00000411423 SRSF5Q13243 272 aaKnown RBP20.06■□□□□ 0.8
SF3A1-202ENST00000411423 SGO2Q562F6 1265 aa20.06■□□□□ 0.8
SF3A1-202ENST00000411423 LY6G5CQ5SRR4 150 aa20.06■□□□□ 0.8
SF3A1-202ENST00000411423 SEMA4AQ9H3S1 761 aa20.06■□□□□ 0.8
SF3A1-202ENST00000411423 NAGPAQ9UK23 515 aa20.06■□□□□ 0.8
SF3A1-202ENST00000411423 PCDHB4Q9Y5E5 795 aa20.06■□□□□ 0.8
SF3A1-202ENST00000411423 WDR87Q6ZQQ6 2873 aa20.05■□□□□ 0.8
SF3A1-202ENST00000411423 XPO1O14980 1071 aaKnown RBP20.05■□□□□ 0.8
SF3A1-202ENST00000411423 BRD2P25440 801 aaKnown RBP20.05■□□□□ 0.8
SF3A1-202ENST00000411423 ATP5C1P36542 298 aaKnown RBP20.05■□□□□ 0.8
SF3A1-202ENST00000411423 ZNF132P52740 706 aa20.05■□□□□ 0.8
SF3A1-202ENST00000411423 YWHAEP62258 255 aaKnown RBP20.05■□□□□ 0.8
SF3A1-202ENST00000411423 AMPD2Q01433 879 aa20.05■□□□□ 0.8
SF3A1-202ENST00000411423 NR1H3Q13133 447 aa20.05■□□□□ 0.8
SF3A1-202ENST00000411423 GJB7Q6PEY0 223 aa20.05■□□□□ 0.8
SF3A1-202ENST00000411423 PHTF2Q8N3S3 785 aa20.05■□□□□ 0.8
SF3A1-202ENST00000411423 DCLK2Q8N568 766 aa20.05■□□□□ 0.8
SF3A1-202ENST00000411423 MLKLQ8NB16 471 aa20.05■□□□□ 0.8
SF3A1-202ENST00000411423 RPLP0P6Q8NHW5 317 aa20.05■□□□□ 0.8
SF3A1-202ENST00000411423 GPT2Q8TD30 523 aa20.05■□□□□ 0.8
SF3A1-202ENST00000411423 CRACR2AQ9BSW2 395 aa20.05■□□□□ 0.8
SF3A1-202ENST00000411423 ULBP1Q9BZM6 244 aa20.05■□□□□ 0.8
SF3A1-202ENST00000411423 NACA2Q9H009 215 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms