RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 GPR63Q9BZJ6 419 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 NCKIPSDQ9NZQ3 722 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 HAO1Q9UJM8 370 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 LSM7Q9UK45 103 aaKnown RBP13.81□□□□□ -0.2
USP49-203ENST00000394253 ABCC4O15439 1325 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 MAP3K19Q56UN5 1328 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 TGM2P21980 687 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 GCLMP48507 274 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 SKP1P63208 163 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 KDM7AQ6ZMT4 941 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 SMYD1Q8NB12 490 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 MYDGFQ969H8 173 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 SGF29Q96ES7 293 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 TMEM237Q96Q45 408 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 DLG3Q92796 817 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 HPS3Q969F9 1004 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 AASDHPPTQ9NRN7 309 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 MAP2P11137 1827 aaKnown RBP13.81□□□□□ -0.2
USP49-203ENST00000394253 SNAP23O00161 211 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 NR5A2O00482 541 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 LIN7AO14910 233 aaPredicted RBP13.81□□□□□ -0.2
USP49-203ENST00000394253 PGK1P00558 417 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 PGS1Q32NB8 556 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 KCTD21Q4G0X4 260 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 PPIL6Q8IXY8 311 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 YAF2Q8IY57 180 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 STARD8Q92502 1023 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 RSAD1Q9HA92 442 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 ROR2Q01974 943 aaKnown RBP13.81□□□□□ -0.2
USP49-203ENST00000394253 VPS35Q96QK1 796 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 C15orf38-AP3S2A0A0A6YYH1 394 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 KMOO15229 486 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 PRPF3O43395 683 aaKnown RBP13.81□□□□□ -0.2
USP49-203ENST00000394253 EPC2Q52LR7 807 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 WASHC2DQ5SRD0 308 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 GAS2L3Q86XJ1 694 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 XKR8Q9H6D3 395 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 HEY2Q9UBP5 337 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 SRP68Q9UHB9 627 aaKnown RBP13.81□□□□□ -0.2
USP49-203ENST00000394253 AP1G2O75843 785 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 PTPN4P29074 926 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 DNAJC3Q13217 504 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 EAPPQ56P03 285 aaPredicted RBP13.81□□□□□ -0.2
USP49-203ENST00000394253 TBCELQ5QJ74 424 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 SNRNP48Q6IEG0 339 aaKnown RBP13.81□□□□□ -0.2
USP49-203ENST00000394253 FAM228AQ86W67 206 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 KATNAL1Q9BW62 490 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 WDR41Q9HAD4 459 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 GPN3Q9UHW5 284 aaPredicted RBP13.81□□□□□ -0.2
USP49-203ENST00000394253 GDAQ9Y2T3 454 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 TMCC2O75069 709 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 POLR2EP19388 210 aaKnown RBP13.8□□□□□ -0.2
USP49-203ENST00000394253 PDHA2P29803 388 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 COL23A1Q86Y22 540 aaPredicted RBP13.8□□□□□ -0.2
USP49-203ENST00000394253 DHX40Q8IX18 779 aaKnown RBP13.8□□□□□ -0.2
USP49-203ENST00000394253 NACC2Q96BF6 587 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 FAM50BQ9Y247 325 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 SYNJ1O43426 1573 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 RBMXL2O75526 392 aaKnown RBP13.8□□□□□ -0.2
USP49-203ENST00000394253 SLC26A3P40879 764 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 STILQ15468 1287 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 NAPEPLDQ6IQ20 393 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 TRAPPC11Q7Z392 1133 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 GDPD5Q8WTR4 605 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 SLC20A1Q8WUM9 679 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 LRRC1Q9BTT6 524 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 FRMD8P1Q9BZ68 369 aaPredicted RBP13.8□□□□□ -0.2
USP49-203ENST00000394253 PTGES3LE9PB15 166 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 TRAPPC3O43617 180 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 APOL3O95236 402 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 LDLRP01130 860 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 WEE2P0C1S8 567 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 ATP1A3P13637 1013 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 MIER2Q8N344 545 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 A0A1W2PQ72 361 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 NFIAQ12857 509 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 AGAP3Q96P47 875 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 TMEM5Q9Y2B1 443 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 ADGRG1Q9Y653 693 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 LDOC1O95751 146 aaPredicted RBP13.8□□□□□ -0.2
USP49-203ENST00000394253 VIL1P09327 827 aaKnown RBP13.8□□□□□ -0.2
USP49-203ENST00000394253 MAGEA4P43358 317 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 PFKFB3Q16875 520 aaPredicted RBP13.8□□□□□ -0.2
USP49-203ENST00000394253 SYDE2Q5VT97 1194 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 ZNF614Q8N883 585 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 TMEM168Q9H0V1 697 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 PNMA6EA0A0J9YXQ4 647 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 VPS26AO75436 327 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 DHFRP00374 187 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 NFYCQ13952 458 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 SMIM5Q71RC9 77 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 ITCHQ96J02 903 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 PHB2Q99623 299 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 SLC39A10Q9ULF5 831 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 PHTF1Q9UMS5 762 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 DSG3P32926 999 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 HPCAL1P37235 193 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 CENPCQ03188 943 aa13.8□□□□□ -0.2
USP49-203ENST00000394253 POLD3Q15054 466 aaPredicted RBP13.8□□□□□ -0.2
USP49-203ENST00000394253 ACAP2Q15057 778 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms