RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 RGS19P49795 217 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 USP46P62068 366 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 DENND5BQ6ZUT9 1274 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 DEFB106AQ8N104 65 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 ARFGAP1Q8N6T3 406 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 GIPC2Q8TF65 315 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 CFAP57Q96MR6 1250 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 SLC2A13Q96QE2 648 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 PSMB7Q99436 277 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 DDX23Q9BUQ8 820 aaKnown RBP20.84■□□□□ 0.93
CLN3-205ENST00000359984 EMILIN2Q9BXX0 1053 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 CERS4Q9HA82 394 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 NGRNQ9NPE2 291 aaKnown RBP20.84■□□□□ 0.93
CLN3-205ENST00000359984 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.84■□□□□ 0.93
CLN3-205ENST00000359984 SAR1BQ9Y6B6 198 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 CHD7Q9P2D1 2997 aa20.83■□□□□ 0.93
CLN3-205ENST00000359984 H3BNC9 293 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 RIOK3O14730 519 aaKnown RBP20.83■□□□□ 0.92
CLN3-205ENST00000359984 TGM5O43548 720 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 SRGAP2O75044 1071 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 DAB1O75553 588 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 LTFP02788 710 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 ELF1P32519 619 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 IRS1P35568 1242 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 GPM6BQ13491 265 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 MTMR3Q13615 1198 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 C15orf59Q2T9L4 293 aaPredicted RBP20.83■□□□□ 0.92
CLN3-205ENST00000359984 SH3PXD2AQ5TCZ1 1133 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 CC2D1AQ6P1N0 951 aaPredicted RBP20.83■□□□□ 0.92
CLN3-205ENST00000359984 LILRA6Q6PI73 481 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 TCEAL8Q8IYN2 117 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 TDHQ8IZJ6 230 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 KRT35Q92764 455 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 FBXO44Q9H4M3 255 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 POPDC2Q9HBU9 364 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 MAFFQ9ULX9 164 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 SCML2Q9UQR0 700 aa20.83■□□□□ 0.92
CLN3-205ENST00000359984 MIF4GDA9UHW6 222 aaKnown RBP20.82■□□□□ 0.92
CLN3-205ENST00000359984 ADH1AP07327 375 aa20.82■□□□□ 0.92
CLN3-205ENST00000359984 SPATA31D3P0C874 917 aa20.82■□□□□ 0.92
CLN3-205ENST00000359984 PRLRP16471 622 aa20.82■□□□□ 0.92
CLN3-205ENST00000359984 SDC4P31431 198 aa20.82■□□□□ 0.92
CLN3-205ENST00000359984 CXCR5P32302 372 aa20.82■□□□□ 0.92
CLN3-205ENST00000359984 MATKP42679 507 aa20.82■□□□□ 0.92
CLN3-205ENST00000359984 MARCKSL1P49006 195 aa20.82■□□□□ 0.92
CLN3-205ENST00000359984 TAS2R40P59535 323 aa20.82■□□□□ 0.92
CLN3-205ENST00000359984 ACAP1Q15027 740 aa20.82■□□□□ 0.92
CLN3-205ENST00000359984 SPATA31D4Q6ZUB0 917 aa20.82■□□□□ 0.92
CLN3-205ENST00000359984 MICAL1Q8TDZ2 1067 aa20.82■□□□□ 0.92
CLN3-205ENST00000359984 CEP295NLQ96MC4 621 aa20.82■□□□□ 0.92
CLN3-205ENST00000359984 OSBPL9Q96SU4 736 aa20.82■□□□□ 0.92
CLN3-205ENST00000359984 YIPF1Q9Y548 306 aa20.82■□□□□ 0.92
CLN3-205ENST00000359984 SLC38A8A6NNN8 435 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 DYNC1I1O14576 645 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 RTN3O95197 1032 aaPredicted RBP20.81■□□□□ 0.92
CLN3-205ENST00000359984 TCF4P15884 667 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 TFE3P19532 575 aaPredicted RBP20.81■□□□□ 0.92
CLN3-205ENST00000359984 CTNNA2P26232 953 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 KLRC2P26717 231 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 CTNNA1P35221 906 aaKnown RBP20.81■□□□□ 0.92
CLN3-205ENST00000359984 PTPN9P43378 593 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 PGFP49763 221 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 ATP11AP98196 1134 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 DCAF6Q58WW2 860 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 SYPL2Q5VXT5 272 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 BSPRYQ5W0U4 402 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 PPP2R2DQ66LE6 453 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 SCD5Q86SK9 330 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 ALG3Q92685 438 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 NAALADL1Q9UQQ1 740 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 PCDHA3Q9Y5H8 950 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 FAM92AA1XBS5 289 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 PRRG1O14668 218 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 LRCH4O75427 683 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 YWHAQP27348 245 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 NOS2P35228 1153 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 SSR1P43307 286 aaKnown RBP20.81■□□□□ 0.92
CLN3-205ENST00000359984 PEX5P50542 639 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 CDO1Q16878 200 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 RAB6CQ53S08 254 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 COG1Q8WTW3 980 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 ADAM33Q9BZ11 813 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 RAB6CQ9H0N0 254 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 COMMD8Q9NX08 183 aa20.81■□□□□ 0.92
CLN3-205ENST00000359984 KCNK3O14649 394 aa20.8■□□□□ 0.92
CLN3-205ENST00000359984 ZNF185O15231 689 aa20.8■□□□□ 0.92
CLN3-205ENST00000359984 RNF8O76064 485 aa20.8■□□□□ 0.92
CLN3-205ENST00000359984 TCP1P17987 556 aaKnown RBP20.8■□□□□ 0.92
CLN3-205ENST00000359984 ALDH1A3P47895 512 aa20.8■□□□□ 0.92
CLN3-205ENST00000359984 YWHAGP61981 247 aaKnown RBP eCLIP20.8■□□□□ 0.92
CLN3-205ENST00000359984 UBL4BQ8N7F7 174 aa20.8■□□□□ 0.92
CLN3-205ENST00000359984 FAM172AQ8WUF8 416 aa20.8■□□□□ 0.92
CLN3-205ENST00000359984 ARNTL2Q8WYA1 636 aa20.8■□□□□ 0.92
CLN3-205ENST00000359984 EDEM1Q92611 657 aa20.8■□□□□ 0.92
CLN3-205ENST00000359984 CENPIQ92674 756 aaPredicted RBP20.8■□□□□ 0.92
CLN3-205ENST00000359984 GOLGA1Q92805 767 aa20.8■□□□□ 0.92
CLN3-205ENST00000359984 SLC28A3Q9HAS3 691 aa20.8■□□□□ 0.92
CLN3-205ENST00000359984 CDC23Q9UJX2 597 aa20.8■□□□□ 0.92
CLN3-205ENST00000359984 CCDC66A2RUB6 948 aa20.79■□□□□ 0.92
CLN3-205ENST00000359984 CAPN9O14815 690 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms