RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 DDX42Q86XP3 938 aaKnown RBP eCLIP17.2■□□□□ 0.34
LSM1-201ENST00000311351 ZBTB44Q8NCP5 570 aa17.2■□□□□ 0.34
LSM1-201ENST00000311351 EZH1Q92800 747 aaPredicted RBP17.2■□□□□ 0.34
LSM1-201ENST00000311351 NT5C1BQ96P26 610 aa17.2■□□□□ 0.34
LSM1-201ENST00000311351 MED15Q96RN5 788 aa17.2■□□□□ 0.34
LSM1-201ENST00000311351 P2RY13Q9BPV8 354 aa17.2■□□□□ 0.34
LSM1-201ENST00000311351 NACA2Q9H009 215 aa17.2■□□□□ 0.34
LSM1-201ENST00000311351 FAM124BQ9H5Z6 455 aaPredicted RBP17.2■□□□□ 0.34
LSM1-201ENST00000311351 ZSCAN32Q9NX65 697 aa17.2■□□□□ 0.34
LSM1-201ENST00000311351 PCDHGA2Q9Y5H1 932 aa17.2■□□□□ 0.34
LSM1-201ENST00000311351 ZNF292O60281 2723 aa17.2■□□□□ 0.34
LSM1-201ENST00000311351 MDM4O15151 490 aa17.19■□□□□ 0.34
LSM1-201ENST00000311351 PMM2O15305 246 aa17.19■□□□□ 0.34
LSM1-201ENST00000311351 RNF40O75150 1001 aa17.19■□□□□ 0.34
LSM1-201ENST00000311351 LMNAP02545 664 aaKnown RBP17.19■□□□□ 0.34
LSM1-201ENST00000311351 CD19P15391 556 aa17.19■□□□□ 0.34
LSM1-201ENST00000311351 TBXAS1P24557 533 aaPredicted RBP17.19■□□□□ 0.34
LSM1-201ENST00000311351 MARSP56192 900 aaKnown RBP17.19■□□□□ 0.34
LSM1-201ENST00000311351 YWHAEP62258 255 aaKnown RBP17.19■□□□□ 0.34
LSM1-201ENST00000311351 AMPD2Q01433 879 aa17.19■□□□□ 0.34
LSM1-201ENST00000311351 DMWDQ09019 674 aa17.19■□□□□ 0.34
LSM1-201ENST00000311351 KCNH2Q12809 1159 aa17.19■□□□□ 0.34
LSM1-201ENST00000311351 MAMSTRQ6ZN01 415 aa17.19■□□□□ 0.34
LSM1-201ENST00000311351 ARHGEF19Q8IW93 802 aa17.19■□□□□ 0.34
LSM1-201ENST00000311351 PPM1KQ8N3J5 372 aa17.19■□□□□ 0.34
LSM1-201ENST00000311351 LMO3Q8TAP4 145 aa17.19■□□□□ 0.34
LSM1-201ENST00000311351 CD101Q93033 1021 aa17.19■□□□□ 0.34
LSM1-201ENST00000311351 RWDD2AQ9UIY3 292 aa17.19■□□□□ 0.34
LSM1-201ENST00000311351 NUDT5Q9UKK9 219 aa17.19■□□□□ 0.34
LSM1-201ENST00000311351 TSPAN16Q9UKR8 245 aa17.19■□□□□ 0.34
LSM1-201ENST00000311351 FRYLO94915 3013 aa17.18■□□□□ 0.34
LSM1-201ENST00000311351 K7ESF4 209 aa17.18■□□□□ 0.34
LSM1-201ENST00000311351 TULP2O00295 520 aa17.18■□□□□ 0.34
LSM1-201ENST00000311351 GNA14O95837 355 aa17.18■□□□□ 0.34
LSM1-201ENST00000311351 AFPP02771 609 aaKnown RBP17.18■□□□□ 0.34
LSM1-201ENST00000311351 OPRD1P41143 372 aa17.18■□□□□ 0.34
LSM1-201ENST00000311351 NR1H3Q13133 447 aa17.18■□□□□ 0.34
LSM1-201ENST00000311351 DHCR24Q15392 516 aa17.18■□□□□ 0.34
LSM1-201ENST00000311351 SGO2Q562F6 1265 aa17.18■□□□□ 0.34
LSM1-201ENST00000311351 TMEM270Q6UE05 265 aa17.18■□□□□ 0.34
LSM1-201ENST00000311351 SCD5Q86SK9 330 aa17.18■□□□□ 0.34
LSM1-201ENST00000311351 PIGZQ86VD9 579 aa17.18■□□□□ 0.34
LSM1-201ENST00000311351 BBS7Q8IWZ6 715 aa17.18■□□□□ 0.34
LSM1-201ENST00000311351 SYNPOQ8N3V7 929 aa17.18■□□□□ 0.34
LSM1-201ENST00000311351 ATRIPQ8WXE1 791 aa17.18■□□□□ 0.34
LSM1-201ENST00000311351 CNOT6LQ96LI5 555 aaKnown RBP17.18■□□□□ 0.34
LSM1-201ENST00000311351 SEMA4AQ9H3S1 761 aa17.18■□□□□ 0.34
LSM1-201ENST00000311351 CYLDQ9NQC7 956 aa17.18■□□□□ 0.34
LSM1-201ENST00000311351 POLR3BQ9NW08 1133 aaPredicted RBP17.18■□□□□ 0.34
LSM1-201ENST00000311351 SH3BP1Q9Y3L3 701 aa17.18■□□□□ 0.34
LSM1-201ENST00000311351 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.18■□□□□ 0.34
LSM1-201ENST00000311351 E2F8A0AVK6 867 aa17.17■□□□□ 0.34
LSM1-201ENST00000311351 SLC9A3R1O14745 358 aaPredicted RBP17.17■□□□□ 0.34
LSM1-201ENST00000311351 P4HA2O15460 535 aa17.17■□□□□ 0.34
LSM1-201ENST00000311351 LILRB5O75023 590 aa17.17■□□□□ 0.34
LSM1-201ENST00000311351 CALCAP01258 141 aa17.17■□□□□ 0.34
LSM1-201ENST00000311351 RARGP13631 454 aa17.17■□□□□ 0.34
LSM1-201ENST00000311351 DRD1P21728 446 aa17.17■□□□□ 0.34
LSM1-201ENST00000311351 PPP2R5DQ14738 602 aa17.17■□□□□ 0.34
LSM1-201ENST00000311351 HEATR6Q6AI08 1181 aaKnown RBP17.17■□□□□ 0.34
LSM1-201ENST00000311351 RRAGAQ7L523 313 aa17.17■□□□□ 0.34
LSM1-201ENST00000311351 CCDC186Q7Z3E2 898 aa17.17■□□□□ 0.34
LSM1-201ENST00000311351 C12orf40Q86WS4 652 aa17.17■□□□□ 0.34
LSM1-201ENST00000311351 ADGRG2Q8IZP9 1017 aa17.17■□□□□ 0.34
LSM1-201ENST00000311351 KIAA1958Q8N8K9 716 aa17.17■□□□□ 0.34
LSM1-201ENST00000311351 ANKRD52Q8NB46 1076 aa17.17■□□□□ 0.34
LSM1-201ENST00000311351 SUMF1Q8NBK3 374 aa17.17■□□□□ 0.34
LSM1-201ENST00000311351 INTS2Q9H0H0 1204 aaKnown RBP17.17■□□□□ 0.34
LSM1-201ENST00000311351 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.17■□□□□ 0.34
LSM1-201ENST00000311351 NAGPAQ9UK23 515 aa17.17■□□□□ 0.34
LSM1-201ENST00000311351 PCDHB4Q9Y5E5 795 aa17.17■□□□□ 0.34
LSM1-201ENST00000311351 USP3Q9Y6I4 520 aa17.17■□□□□ 0.34
LSM1-201ENST00000311351 SPTBN4Q9H254 2564 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 ANTXRLA6NF34 631 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 CHURC1-FNTBB4DL54 471 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 O00370 1275 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 PAPSS2O95340 614 aaPredicted RBP17.16■□□□□ 0.34
LSM1-201ENST00000311351 CCDC192P0DO97 292 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 ADH5P11766 374 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 FNTBP49356 437 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 BCAT1P54687 386 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 PDE4CQ08493 712 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 MESP2Q0VG99 397 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 CETN1Q12798 172 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 DPCR1Q3MIW9 517 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 RAB41Q5JT25 222 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 C10orf120Q5SQS8 335 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 LY6G5CQ5SRR4 150 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 RHBDF2Q6PJF5 856 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 RPLP0P6Q8NHW5 317 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 UBA3Q8TBC4 463 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 TFAP2BQ92481 460 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 KLF16Q9BXK1 252 aaPredicted RBP17.16■□□□□ 0.34
LSM1-201ENST00000311351 FAM126AQ9BYI3 521 aaPredicted RBP17.16■□□□□ 0.34
LSM1-201ENST00000311351 NUP62CLQ9H1M0 184 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 EML5Q05BV3 1969 aa17.16■□□□□ 0.34
LSM1-201ENST00000311351 RNF225M0QZC1 329 aaPredicted RBP17.15■□□□□ 0.34
LSM1-201ENST00000311351 XPO1O14980 1071 aaKnown RBP17.15■□□□□ 0.34
LSM1-201ENST00000311351 GREM1O60565 184 aa17.15■□□□□ 0.34
LSM1-201ENST00000311351 FGFR1OPO95684 399 aaKnown RBP17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms