RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 VPS33AQ96AX1 596 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 CHORDC1Q9UHD1 332 aaPredicted RBP11.73□□□□□ -0.53
PTPN4-201ENST00000263708 MSH4O15457 936 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 TEX33O43247 280 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 AGMOQ6ZNB7 445 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 TBCDQ9BTW9 1192 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 PDS5AQ29RF7 1337 aaKnown RBP11.73□□□□□ -0.53
PTPN4-201ENST00000263708 ADAMTS12P58397 1594 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 GUCY1B2O75343 617 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 EPHB2P29323 1055 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 MDH1P40925 334 aaKnown RBP11.73□□□□□ -0.53
PTPN4-201ENST00000263708 MCAMP43121 646 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 CCT3P49368 545 aaKnown RBP11.73□□□□□ -0.53
PTPN4-201ENST00000263708 AP1S2P56377 157 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 STX5Q13190 355 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 ACSF2Q96CM8 615 aaPredicted RBP11.73□□□□□ -0.53
PTPN4-201ENST00000263708 ELOVL6Q9H5J4 265 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 GJB4Q9NTQ9 266 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 ARIH1Q9Y4X5 557 aaPredicted RBP11.73□□□□□ -0.53
PTPN4-201ENST00000263708 FOXR1Q6PIV2 292 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 MIB1Q86YT6 1006 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 ACOX2Q99424 681 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 GPR108Q9NPR9 543 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 SLC2A3P11169 496 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 EIF2S3P41091 472 aaKnown RBP11.72□□□□□ -0.53
PTPN4-201ENST00000263708 LIFRP42702 1097 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 HERC6Q8IVU3 1022 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 PPP2R3BQ9Y5P8 575 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 FAM25EA8MYX2 175 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 CDH16O75309 829 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 EFHC1Q5JVL4 640 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 OXER1Q8TDS5 423 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 VPS33BQ9H267 617 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 ATG7O95352 703 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 CD2BP2O95400 341 aaKnown RBP11.72□□□□□ -0.53
PTPN4-201ENST00000263708 QRICH1Q2TAL8 776 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 APLFQ8IW19 511 aaPredicted RBP11.72□□□□□ -0.53
PTPN4-201ENST00000263708 MRPS31Q92665 395 aaKnown RBP11.72□□□□□ -0.53
PTPN4-201ENST00000263708 RSAD1Q9HA92 442 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 GPRC5DQ9NZD1 345 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 LOC102724159A0A0B4J2E5 919 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 BAIAP3O94812 1187 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 PEX5P50542 639 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 ACOX1Q15067 660 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 PWP2Q15269 919 aaKnown RBP11.72□□□□□ -0.53
PTPN4-201ENST00000263708 TINF2Q9BSI4 451 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 ADGRE3Q9BY15 652 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 COMMD8Q9NX08 183 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 BARHL2Q9NY43 387 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 ERBB4Q15303 1308 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 TRIM3O75382 744 aaPredicted RBP11.72□□□□□ -0.53
PTPN4-201ENST00000263708 SERPINB8P50452 374 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 GNASQ5JWF2 1037 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 CBWD2Q8IUF1 395 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 COPG2Q9UBF2 871 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 MYL12BO14950 172 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 TSPAN19P0C672 248 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 EMC2Q15006 297 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 GPAT2Q6NUI2 795 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 SH2D3CQ8N5H7 860 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 PDGFCQ9NRA1 345 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 COMMD9Q9P000 198 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 STK39Q9UEW8 545 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 GOLGA4Q13439 2230 aaKnown RBP11.72□□□□□ -0.53
PTPN4-201ENST00000263708 UQCRBP14927 111 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 ITIH2P19823 946 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 ATP1A4Q13733 1029 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 TERF2Q15554 542 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 DOK6Q6PKX4 331 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 FAM220AQ7Z4H9 259 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 COLEC11Q9BWP8 271 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 TMEM138Q9NPI0 162 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 F5H6K3 240 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 M0QYT0 321 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 WWP2O00308 870 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 IGF2BP3O00425 579 aaKnown RBP eCLIP11.72□□□□□ -0.53
PTPN4-201ENST00000263708 HS6ST1O60243 411 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 TDP2O95551 362 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 ALOX12P18054 663 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 DNAJB2P25686 324 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 MAGEA4P43358 317 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 EIF2B2P49770 351 aaKnown RBP11.72□□□□□ -0.53
PTPN4-201ENST00000263708 GEMIN4P57678 1058 aaKnown RBP11.72□□□□□ -0.53
PTPN4-201ENST00000263708 KLRC3Q07444 240 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 ALG11Q2TAA5 492 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 CCDC144BQ3MJ40 725 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 ERMARDQ5T6L9 678 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 HPS6Q86YV9 775 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 BRSK2Q8IWQ3 736 aa11.72□□□□□ -0.53
PTPN4-201ENST00000263708 MTSS1O43312 755 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 SKIV2L2P42285 1042 aaKnown RBP11.71□□□□□ -0.53
PTPN4-201ENST00000263708 PGBD2Q6P3X8 592 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 NT5DC3Q86UY8 548 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 SKA1Q96BD8 255 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 MIEF2Q96C03 454 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 DDIT4Q9NX09 232 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 BICRAQ9NZM4 1560 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 TMEM120BA0PK00 339 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 EFCAB10A6NFE3 127 aa11.71□□□□□ -0.53
PTPN4-201ENST00000263708 IRX1P78414 480 aaPredicted RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms