RNA–Protein interactions for RNA: snR40

snR40, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR40, Length 97 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR40snR40 SOD2P00447 233 aa0.5□□□□□ -2.33
snR40snR40 DED81P38707 554 aaKnown RBP0.5□□□□□ -2.33
snR40snR40 ALA1P40825 983 aaKnown RBP0.5□□□□□ -2.33
snR40snR40 TY4A-HQ6Q5P6 413 aa0.5□□□□□ -2.33
snR40snR40 ALD2P47771 506 aa0.49□□□□□ -2.33
snR40snR40 FPK1P53739 893 aa0.49□□□□□ -2.33
snR40snR40 ATG20Q07528 640 aa0.49□□□□□ -2.33
snR40snR40 RPS31P05759 152 aaKnown RBP0.48□□□□□ -2.33
snR40snR40 RGP1P16664 663 aa0.48□□□□□ -2.33
snR40snR40 CHS7P38843 316 aa0.48□□□□□ -2.33
snR40snR40 UTP7P40055 554 aaKnown RBP0.48□□□□□ -2.33
snR40snR40 SUM1P46676 1062 aa0.48□□□□□ -2.33
snR40snR40 SUN4P53616 420 aa0.48□□□□□ -2.33
snR40snR40 ORC3P54790 616 aa0.48□□□□□ -2.33
snR40snR40 MET30P39014 640 aa0.47□□□□□ -2.33
snR40snR40 DSE4P53753 1117 aa0.47□□□□□ -2.33
snR40snR40 PRE10P21242 288 aaKnown RBP RIP-Chip data0.46□□□□□ -2.34not detected
snR40snR40 TFA1P36100 482 aa0.46□□□□□ -2.34
snR40snR40 TEA1P47988 759 aa0.46□□□□□ -2.34
snR40snR40 MRPL22P53881 309 aa0.46□□□□□ -2.34
snR40snR40 YPL277CQ08989 487 aa0.46□□□□□ -2.34
snR40snR40 ERS1P17261 260 aa0.45□□□□□ -2.34
snR40snR40 TED1P40533 473 aa0.45□□□□□ -2.34
snR40snR40 SEC5P89102 971 aa0.45□□□□□ -2.34
snR40snR40 YMR196WQ04336 1088 aa0.45□□□□□ -2.34
snR40snR40 YPR084WQ06821 456 aa0.45□□□□□ -2.34
snR40snR40 SPT2P06843 333 aaPredicted RBP0.44□□□□□ -2.34
snR40snR40 MPT5P39016 859 aaKnown RBP RIP-Chip data0.44□□□□□ -2.34not detected
snR40snR40 GIS2P53849 153 aaKnown RBP RIP-Chip data0.44□□□□□ -2.34not detected
snR40snR40 PPM2Q08282 695 aa0.44□□□□□ -2.34
snR40snR40 NSI1Q12457 570 aa0.44□□□□□ -2.34
snR40snR40 MRP10O75012 95 aa0.43□□□□□ -2.34
snR40snR40 RPS13P05756 151 aaKnown RBP0.43□□□□□ -2.34
snR40snR40 DAT1P13483 248 aaKnown RBP0.43□□□□□ -2.34
snR40snR40 STB2P46679 850 aa0.43□□□□□ -2.34
snR40snR40 HOF1Q05080 669 aa0.43□□□□□ -2.34
snR40snR40 PDI1P17967 522 aaKnown RBP0.42□□□□□ -2.34
snR40snR40 SCJ1P25303 377 aa0.42□□□□□ -2.34
snR40snR40 TAT2P38967 592 aa0.42□□□□□ -2.34
snR40snR40 AIM21P40563 679 aa0.42□□□□□ -2.34
snR40snR40 NCE103P53615 221 aa0.42□□□□□ -2.34
snR40snR40 YDL177CQ12257 170 aa0.42□□□□□ -2.34
snR40snR40 TEC1P18412 486 aa0.41□□□□□ -2.34
snR40snR40 UTR2P32623 467 aa0.41□□□□□ -2.34
snR40snR40 GIP2P40036 548 aa0.41□□□□□ -2.34
snR40snR40 YER158CP40095 573 aa0.41□□□□□ -2.34
snR40snR40 GIC2Q06648 383 aa0.41□□□□□ -2.34
snR40snR40 NDJ1Q12366 352 aa0.41□□□□□ -2.34
snR40snR40 MDM10P18409 493 aa0.4□□□□□ -2.35
snR40snR40 ADP1P25371 1049 aa0.39□□□□□ -2.35
snR40snR40 TBS1P38114 1094 aa0.39□□□□□ -2.35
snR40snR40 NCL1P38205 684 aaKnown RBP0.39□□□□□ -2.35
snR40snR40 RSC30P38781 883 aa0.39□□□□□ -2.35
snR40snR40 CIT3P43635 486 aa0.39□□□□□ -2.35
snR40snR40 GLO1P50107 326 aa0.39□□□□□ -2.35
snR40snR40 HST2P53686 357 aa0.39□□□□□ -2.35
snR40snR40 LPX1Q12405 387 aaKnown RBP0.39□□□□□ -2.35
snR40snR40 PMI40P29952 429 aaKnown RBP0.38□□□□□ -2.35
snR40snR40 MMM1P41800 426 aa0.38□□□□□ -2.35
snR40snR40 STE4P18851 423 aa0.37□□□□□ -2.35
snR40snR40 WHI3P34761 661 aaKnown RBP0.37□□□□□ -2.35
snR40snR40 OAR1P35731 278 aa0.37□□□□□ -2.35
snR40snR40 OYE3P41816 400 aaPredicted RBP0.37□□□□□ -2.35
snR40snR40 URN1Q06525 465 aaKnown RBP0.37□□□□□ -2.35
snR40snR40 MOH1P38191 138 aa0.36□□□□□ -2.35
snR40snR40 QRI1P43123 477 aaKnown RBP0.36□□□□□ -2.35
snR40snR40 SKP1P52286 194 aa0.36□□□□□ -2.35
snR40snR40 SOK2P53438 785 aaPredicted RBP0.36□□□□□ -2.35
snR40snR40 RCM1P53972 490 aa0.36□□□□□ -2.35
snR40snR40 HCM1P25364 564 aa0.35□□□□□ -2.35
snR40snR40 YTA6P40328 754 aa0.35□□□□□ -2.35
snR40snR40 ZAP1P47043 880 aa0.35□□□□□ -2.35
snR40snR40 UBA2P52488 636 aa0.35□□□□□ -2.35
snR40snR40 YPR148CQ06523 435 aa0.35□□□□□ -2.35
snR40snR40 YOR059CQ08448 450 aaKnown RBP0.35□□□□□ -2.35
snR40snR40 GUT2P32191 649 aa0.34□□□□□ -2.36
snR40snR40 SLX8P40072 274 aa0.34□□□□□ -2.36
snR40snR40 YNL165WP53891 406 aa0.34□□□□□ -2.36
snR40snR40 SSY1Q03770 852 aa0.34□□□□□ -2.36
snR40snR40 YPQ2Q06328 317 aa0.34□□□□□ -2.36
snR40snR40 NTO1Q12311 748 aa0.34□□□□□ -2.36
snR40snR40 IDI1P15496 288 aa0.33□□□□□ -2.36
snR40snR40 ESS1P22696 170 aa0.33□□□□□ -2.36
snR40snR40 YJU3P28321 313 aa0.33□□□□□ -2.36
snR40snR40 YNR040WP53736 256 aa0.33□□□□□ -2.36
snR40snR40 MAE1P36013 669 aaKnown RBP0.32□□□□□ -2.36
snR40snR40 ISR1Q06098 443 aaKnown RBP0.32□□□□□ -2.36
snR40snR40 ETP1P38748 585 aaKnown RBP0.31□□□□□ -2.36
snR40snR40 PAN5P38787 379 aa0.31□□□□□ -2.36
snR40snR40 MRPS35P53292 345 aa0.31□□□□□ -2.36
snR40snR40 KIN4Q01919 800 aa0.31□□□□□ -2.36
snR40snR40 YDJ1P25491 409 aaKnown RBP0.3□□□□□ -2.36
snR40snR40 PEX2P32800 271 aa0.3□□□□□ -2.36
snR40snR40 APM2P38700 605 aa0.3□□□□□ -2.36
snR40snR40 STU2P46675 888 aa0.3□□□□□ -2.36
snR40snR40 BPL1P48445 690 aaPredicted RBP0.3□□□□□ -2.36
snR40snR40 SNO2P53823 222 aa0.3□□□□□ -2.36
snR40snR40 CUS1Q02554 436 aaPredicted RBP0.3□□□□□ -2.36
snR40snR40 YDR132CQ03900 495 aa0.3□□□□□ -2.36
snR40snR40 TDA9Q04545 1251 aa0.3□□□□□ -2.36
Retrieved 100 of 5,963 RNA–protein pairs in 33.3 ms