RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 MRS2Q9HD23 443 aa23.01■■□□□ 1.27
CLN3-252ENST00000636907 CPS1P31327 1500 aa23.01■■□□□ 1.27
CLN3-252ENST00000636907 KNSTRNQ9Y448 316 aa23■■□□□ 1.27
CLN3-252ENST00000636907 CC2D1BQ5T0F9 858 aaKnown RBP23■■□□□ 1.27
CLN3-252ENST00000636907 CABP2Q9NPB3 220 aa23■■□□□ 1.27
CLN3-252ENST00000636907 SLC26A8Q96RN1 970 aa22.99■■□□□ 1.27
CLN3-252ENST00000636907 TMC1Q8TDI8 760 aa22.98■■□□□ 1.27
CLN3-252ENST00000636907 SIRT1Q96EB6 747 aa22.98■■□□□ 1.27
CLN3-252ENST00000636907 FAM135BQ49AJ0 1406 aa22.98■■□□□ 1.27
CLN3-252ENST00000636907 MYBBP1AQ9BQG0 1328 aaKnown RBP22.98■■□□□ 1.27
CLN3-252ENST00000636907 SLC12A5Q9H2X9 1139 aa22.97■■□□□ 1.27
CLN3-252ENST00000636907 DIP2AQ14689 1571 aa22.97■■□□□ 1.27
CLN3-252ENST00000636907 AMER1Q5JTC6 1135 aaPredicted RBP22.97■■□□□ 1.27
CLN3-252ENST00000636907 TBX22Q9Y458 520 aa22.97■■□□□ 1.27
CLN3-252ENST00000636907 SRPK2P78362 688 aaKnown RBP22.96■■□□□ 1.27
CLN3-252ENST00000636907 PTPRUQ92729 1446 aa22.95■■□□□ 1.26
CLN3-252ENST00000636907 CARD14Q9BXL6 1004 aa22.95■■□□□ 1.26
CLN3-252ENST00000636907 ROBO2Q9HCK4 1378 aa22.94■■□□□ 1.26
CLN3-252ENST00000636907 ANKLE2Q86XL3 938 aa22.93■■□□□ 1.26
CLN3-252ENST00000636907 CDK19Q9BWU1 502 aa22.93■■□□□ 1.26
CLN3-252ENST00000636907 NPC1L1Q9UHC9 1359 aa22.93■■□□□ 1.26
CLN3-252ENST00000636907 ATAD2Q6PL18 1390 aa22.92■■□□□ 1.26
CLN3-252ENST00000636907 BRD4O60885 1362 aaPredicted RBP22.9■■□□□ 1.26
CLN3-252ENST00000636907 NINLQ9Y2I6 1382 aa22.9■■□□□ 1.26
CLN3-252ENST00000636907 NSD3Q9BZ95 1437 aa22.89■■□□□ 1.25
CLN3-252ENST00000636907 ANKRD36BQ8N2N9 1353 aa22.89■■□□□ 1.25
CLN3-252ENST00000636907 NLRP13Q86W25 1043 aa22.88■■□□□ 1.25
CLN3-252ENST00000636907 FAM9BQ8IZU0 186 aa22.88■■□□□ 1.25
CLN3-252ENST00000636907 AMOTL2Q9Y2J4 779 aa22.88■■□□□ 1.25
CLN3-252ENST00000636907 WASLO00401 505 aaPredicted RBP22.87■■□□□ 1.25
CLN3-252ENST00000636907 XRN1Q8IZH2 1706 aaKnown RBP22.85■■□□□ 1.25
CLN3-252ENST00000636907 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.85■■□□□ 1.25
CLN3-252ENST00000636907 USP32Q8NFA0 1604 aa22.85■■□□□ 1.25
CLN3-252ENST00000636907 PTCH1Q13635 1447 aa22.85■■□□□ 1.25
CLN3-252ENST00000636907 PIK3R4Q99570 1358 aa22.84■■□□□ 1.25
CLN3-252ENST00000636907 ADGRB2O60241 1585 aa22.84■■□□□ 1.25
CLN3-252ENST00000636907 A0A1W2PP64 1363 aa22.83■■□□□ 1.25
CLN3-252ENST00000636907 PNISRQ8TF01 805 aaKnown RBP22.83■■□□□ 1.24
CLN3-252ENST00000636907 CD163L1Q9NR16 1453 aa22.83■■□□□ 1.24
CLN3-252ENST00000636907 PPP2R1AP30153 589 aa22.81■■□□□ 1.24
CLN3-252ENST00000636907 CABP1Q9NZU7 370 aa22.81■■□□□ 1.24
CLN3-252ENST00000636907 NPHP4O75161 1426 aaPredicted RBP22.8■■□□□ 1.24
CLN3-252ENST00000636907 HNRNPUQ00839 825 aaKnown RBP eCLIP22.8■■□□□ 1.24
CLN3-252ENST00000636907 TERF2IPQ9NYB0 399 aa22.79■■□□□ 1.24
CLN3-252ENST00000636907 CGNL1Q0VF96 1302 aa22.78■■□□□ 1.24
CLN3-252ENST00000636907 KDM4FA0A1W2PPD8 638 aa22.77■■□□□ 1.24
CLN3-252ENST00000636907 CHD2O14647 1828 aaKnown RBP22.77■■□□□ 1.24
CLN3-252ENST00000636907 KCNA6P17658 529 aa22.77■■□□□ 1.24
CLN3-252ENST00000636907 NUDT16Q96DE0 195 aaKnown RBP22.77■■□□□ 1.24
CLN3-252ENST00000636907 NCKAP5LQ9HCH0 1330 aa22.77■■□□□ 1.23
CLN3-252ENST00000636907 HDGFL2Q7Z4V5 671 aaPredicted RBP22.76■■□□□ 1.23
CLN3-252ENST00000636907 ATP7BP35670 1465 aa22.76■■□□□ 1.23
CLN3-252ENST00000636907 PPIP5K1Q6PFW1 1433 aa22.75■■□□□ 1.23
CLN3-252ENST00000636907 PRR36Q9H6K5 1346 aa22.74■■□□□ 1.23
CLN3-252ENST00000636907 NSD2O96028 1365 aa22.73■■□□□ 1.23
CLN3-252ENST00000636907 MORC1Q86VD1 984 aa22.72■■□□□ 1.23
CLN3-252ENST00000636907 CCDC61Q9Y6R9 512 aa22.72■■□□□ 1.23
CLN3-252ENST00000636907 CDC42BPGQ6DT37 1551 aa22.7■■□□□ 1.22
CLN3-252ENST00000636907 CPSF1Q10570 1443 aaKnown RBP22.7■■□□□ 1.22
CLN3-252ENST00000636907 TOPAZ1Q8N9V7 1692 aa22.7■■□□□ 1.22
CLN3-252ENST00000636907 ANKRD26Q9UPS8 1709 aa22.66■■□□□ 1.22
CLN3-252ENST00000636907 NUTM2FA1L443 756 aa22.66■■□□□ 1.22
CLN3-252ENST00000636907 KIF20BQ96Q89 1820 aa22.65■■□□□ 1.22
CLN3-252ENST00000636907 FYB1O15117 783 aa22.65■■□□□ 1.22
CLN3-252ENST00000636907 AKAP12Q02952 1782 aa22.65■■□□□ 1.22
CLN3-252ENST00000636907 ZBED9Q6R2W3 1325 aa22.65■■□□□ 1.22
CLN3-252ENST00000636907 TNNT2P45379 298 aaPredicted RBP22.65■■□□□ 1.22
CLN3-252ENST00000636907 NWD1Q149M9 1564 aa22.65■■□□□ 1.22
CLN3-252ENST00000636907 ITSN1Q15811 1721 aa22.65■■□□□ 1.22
CLN3-252ENST00000636907 MON2Q7Z3U7 1717 aa22.65■■□□□ 1.22
CLN3-252ENST00000636907 GGNBP2Q9H3C7 697 aa22.65■■□□□ 1.22
CLN3-252ENST00000636907 EDC4Q6P2E9 1401 aaKnown RBP22.64■■□□□ 1.21
CLN3-252ENST00000636907 HSPA2P54652 639 aa22.63■■□□□ 1.21
CLN3-252ENST00000636907 NALCNQ8IZF0 1738 aa22.63■■□□□ 1.21
CLN3-252ENST00000636907 NKTRP30414 1462 aaKnown RBP22.62■■□□□ 1.21
CLN3-252ENST00000636907 PLEKHG3A1L390 1219 aa22.62■■□□□ 1.21
CLN3-252ENST00000636907 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.62■■□□□ 1.21
CLN3-252ENST00000636907 LMTK3Q96Q04 1460 aa22.61■■□□□ 1.21
CLN3-252ENST00000636907 INSRP06213 1382 aa22.61■■□□□ 1.21
CLN3-252ENST00000636907 FMN2Q9NZ56 1722 aa22.61■■□□□ 1.21
CLN3-252ENST00000636907 POLR3AO14802 1390 aaPredicted RBP22.6■■□□□ 1.21
CLN3-252ENST00000636907 RBM33Q96EV2 1170 aaKnown RBP22.59■■□□□ 1.21
CLN3-252ENST00000636907 ZNF692Q9BU19 519 aaPredicted RBP22.59■■□□□ 1.21
CLN3-252ENST00000636907 BLMP54132 1417 aaPredicted RBP22.59■■□□□ 1.21
CLN3-252ENST00000636907 ACEP12821 1306 aa22.59■■□□□ 1.21
CLN3-252ENST00000636907 RGPD8O14715 1765 aaPredicted RBP22.59■■□□□ 1.21
CLN3-252ENST00000636907 ANKARQ7Z5J8 1434 aa22.58■■□□□ 1.21
CLN3-252ENST00000636907 SCAF1Q9H7N4 1312 aaKnown RBP22.58■■□□□ 1.21
CLN3-252ENST00000636907 WDR43Q15061 677 aaKnown RBP eCLIP22.58■■□□□ 1.2
CLN3-252ENST00000636907 ADAMTS8Q9UP79 889 aa22.58■■□□□ 1.2
CLN3-252ENST00000636907 ADGRL3Q9HAR2 1447 aa22.57■■□□□ 1.2
CLN3-252ENST00000636907 GTF3C3Q9Y5Q9 886 aa22.57■■□□□ 1.2
CLN3-252ENST00000636907 MTHFSP49914 203 aa22.56■■□□□ 1.2
CLN3-252ENST00000636907 NRKQ7Z2Y5 1582 aa22.56■■□□□ 1.2
CLN3-252ENST00000636907 SENP3-EIF4A1A0A087X0R7 540 aa22.55■■□□□ 1.2
CLN3-252ENST00000636907 NME9Q86XW9 330 aa22.54■■□□□ 1.2
CLN3-252ENST00000636907 PMFBP1Q8TBY8 1022 aa22.53■■□□□ 1.2
CLN3-252ENST00000636907 USP6P35125 1406 aa22.53■■□□□ 1.2
CLN3-252ENST00000636907 SHPRHQ149N8 1683 aa22.53■■□□□ 1.2
CLN3-252ENST00000636907 TTC21BQ7Z4L5 1316 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms