RNA–Protein interactions for RNA: ENST00000622183.1

CPNE3-213, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 156 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-213ENST00000622183 KMT5BQ4FZB7 885 aa9.28□□□□□ -0.92
CPNE3-213ENST00000622183 WWC1Q8IX03 1113 aa9.28□□□□□ -0.92
CPNE3-213ENST00000622183 HELBQ8NG08 1087 aaPredicted RBP9.28□□□□□ -0.92
CPNE3-213ENST00000622183 ZNF330Q9Y3S2 320 aaPredicted RBP9.28□□□□□ -0.92
CPNE3-213ENST00000622183 ADGRD1Q6QNK2 874 aa9.27□□□□□ -0.93
CPNE3-213ENST00000622183 FAM163AQ96GL9 167 aaPredicted RBP9.27□□□□□ -0.93
CPNE3-213ENST00000622183 LRCH3Q96II8 777 aa9.27□□□□□ -0.93
CPNE3-213ENST00000622183 GJD4Q96KN9 370 aaPredicted RBP9.27□□□□□ -0.93
CPNE3-213ENST00000622183 TBC1D2BQ9UPU7 963 aa9.27□□□□□ -0.93
CPNE3-213ENST00000622183 C6orf229H3BNL8 230 aa9.26□□□□□ -0.93
CPNE3-213ENST00000622183 CTDSPL2Q05D32 466 aa9.26□□□□□ -0.93
CPNE3-213ENST00000622183 PLSCR2Q9NRY7 297 aa9.26□□□□□ -0.93
CPNE3-213ENST00000622183 SERPINA10Q9UK55 444 aa9.26□□□□□ -0.93
CPNE3-213ENST00000622183 CFAP99D6REC4 459 aa9.25□□□□□ -0.93
CPNE3-213ENST00000622183 ABL2P42684 1182 aa9.25□□□□□ -0.93
CPNE3-213ENST00000622183 CCDC97Q96F63 343 aaPredicted RBP9.25□□□□□ -0.93
CPNE3-213ENST00000622183 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.25□□□□□ -0.93
CPNE3-213ENST00000622183 HRO43593 1189 aa9.24□□□□□ -0.93
CPNE3-213ENST00000622183 ACTN4O43707 911 aaKnown RBP9.24□□□□□ -0.93
CPNE3-213ENST00000622183 MORN1Q5T089 497 aa9.24□□□□□ -0.93
CPNE3-213ENST00000622183 PRR14Q9BWN1 585 aa9.24□□□□□ -0.93
CPNE3-213ENST00000622183 NDUFB9Q9Y6M9 179 aa9.24□□□□□ -0.93
CPNE3-213ENST00000622183 TRIM34Q9BYJ4 488 aa9.23□□□□□ -0.93
CPNE3-213ENST00000622183 HMX1Q9NP08 348 aaPredicted RBP9.23□□□□□ -0.93
CPNE3-213ENST00000622183 Q3C1V9 767 aa9.22□□□□□ -0.93
CPNE3-213ENST00000622183 LCE2DQ5TA82 110 aaPredicted RBP9.21□□□□□ -0.94
CPNE3-213ENST00000622183 RETREG3Q86VR2 466 aa9.21□□□□□ -0.94
CPNE3-213ENST00000622183 ANKK1Q8NFD2 765 aa9.21□□□□□ -0.94
CPNE3-213ENST00000622183 PRR7Q8TB68 274 aa9.21□□□□□ -0.94
CPNE3-213ENST00000622183 TSC1Q92574 1164 aa9.21□□□□□ -0.94
CPNE3-213ENST00000622183 SYMPKQ92797 1274 aaKnown RBP9.21□□□□□ -0.94
CPNE3-213ENST00000622183 GPR37L1O60883 481 aa9.2□□□□□ -0.94
CPNE3-213ENST00000622183 IRF5Q13568 498 aa9.2□□□□□ -0.94
CPNE3-213ENST00000622183 LRRN4Q8WUT4 740 aa9.2□□□□□ -0.94
CPNE3-213ENST00000622183 SLC27A5Q9Y2P5 690 aa9.2□□□□□ -0.94
CPNE3-213ENST00000622183 SOWAHBA6NEL2 793 aa9.19□□□□□ -0.94
CPNE3-213ENST00000622183 PUS10Q3MIT2 529 aaKnown RBP9.19□□□□□ -0.94
CPNE3-213ENST00000622183 GOLGA8CPA6NN73 597 aa9.18□□□□□ -0.94
CPNE3-213ENST00000622183 POM121CA8CG34 1229 aa9.18□□□□□ -0.94
CPNE3-213ENST00000622183 DESI1Q6ICB0 168 aa9.18□□□□□ -0.94
CPNE3-213ENST00000622183 STAC3Q96MF2 364 aa9.18□□□□□ -0.94
CPNE3-213ENST00000622183 PPP4CP60510 307 aa9.17□□□□□ -0.94
CPNE3-213ENST00000622183 WASHC4Q2M389 1173 aa9.17□□□□□ -0.94
CPNE3-213ENST00000622183 GLMNQ92990 594 aa9.17□□□□□ -0.94
CPNE3-213ENST00000622183 CALR3Q96L12 384 aaKnown RBP9.17□□□□□ -0.94
CPNE3-213ENST00000622183 SALL2Q9Y467 1007 aaPredicted RBP9.17□□□□□ -0.94
CPNE3-213ENST00000622183 ANKRD13DQ6ZTN6 518 aa9.16□□□□□ -0.94
CPNE3-213ENST00000622183 HPS5Q9UPZ3 1129 aa9.16□□□□□ -0.94
CPNE3-213ENST00000622183 PER1O15534 1290 aaPredicted RBP9.15□□□□□ -0.94
CPNE3-213ENST00000622183 BCAMP50895 628 aa9.15□□□□□ -0.94
CPNE3-213ENST00000622183 APLP1P51693 650 aa9.15□□□□□ -0.94
CPNE3-213ENST00000622183 TSR3Q9UJK0 312 aaKnown RBP9.15□□□□□ -0.94
CPNE3-213ENST00000622183 BLOC1S3Q6QNY0 202 aa9.14□□□□□ -0.95
CPNE3-213ENST00000622183 EPS8L1Q8TE68 723 aa9.14□□□□□ -0.95
CPNE3-213ENST00000622183 WNT2BQ93097 391 aa9.14□□□□□ -0.95
CPNE3-213ENST00000622183 BRICD5Q6PL45 260 aa9.13□□□□□ -0.95
CPNE3-213ENST00000622183 LYPD8Q6UX82 237 aa9.13□□□□□ -0.95
CPNE3-213ENST00000622183 RNF19BQ6ZMZ0 732 aa9.13□□□□□ -0.95
CPNE3-213ENST00000622183 USB1Q9BQ65 265 aaKnown RBP9.13□□□□□ -0.95
CPNE3-213ENST00000622183 NR1I2O75469 434 aa9.12□□□□□ -0.95
CPNE3-213ENST00000622183 NR6A1Q15406 480 aa9.12□□□□□ -0.95
CPNE3-213ENST00000622183 SCUBE3Q8IX30 993 aa9.12□□□□□ -0.95
CPNE3-213ENST00000622183 PCDHB3Q9Y5E6 796 aa9.12□□□□□ -0.95
CPNE3-213ENST00000622183 ADAMTS19Q8TE59 1207 aa9.11□□□□□ -0.95
CPNE3-213ENST00000622183 THAP11Q96EK4 314 aa9.11□□□□□ -0.95
CPNE3-213ENST00000622183 FMNL1O95466 1100 aaPredicted RBP9.1□□□□□ -0.95
CPNE3-213ENST00000622183 VAC14Q08AM6 782 aa9.1□□□□□ -0.95
CPNE3-213ENST00000622183 HDGFL1Q5TGJ6 251 aa9.1□□□□□ -0.95
CPNE3-213ENST00000622183 PNMA1Q8ND90 353 aa9.1□□□□□ -0.95
CPNE3-213ENST00000622183 PDIA4P13667 645 aaKnown RBP9.09□□□□□ -0.95
CPNE3-213ENST00000622183 PPP1R15AO75807 674 aaPredicted RBP9.08□□□□□ -0.96
CPNE3-213ENST00000622183 SOX11P35716 441 aa9.08□□□□□ -0.96
CPNE3-213ENST00000622183 ALG2Q9H553 416 aa9.08□□□□□ -0.96
CPNE3-213ENST00000622183 WBP1LQ9NX94 342 aa9.08□□□□□ -0.96
CPNE3-213ENST00000622183 JUNDP17535 347 aa9.06□□□□□ -0.96
CPNE3-213ENST00000622183 PTPRNQ16849 979 aa9.06□□□□□ -0.96
CPNE3-213ENST00000622183 F12P00748 615 aaPredicted RBP9.05□□□□□ -0.96
CPNE3-213ENST00000622183 MSS51Q4VC12 460 aa9.05□□□□□ -0.96
CPNE3-213ENST00000622183 THSD4Q6ZMP0 1018 aa9.05□□□□□ -0.96
CPNE3-213ENST00000622183 KRTAP3-3Q9BYR6 98 aa9.05□□□□□ -0.96
CPNE3-213ENST00000622183 KRTAP3-2Q9BYR7 98 aa9.05□□□□□ -0.96
CPNE3-213ENST00000622183 DXOO77932 396 aaKnown RBP9.03□□□□□ -0.96
CPNE3-213ENST00000622183 TRIM26Q12899 539 aaPredicted RBP9.03□□□□□ -0.96
CPNE3-213ENST00000622183 FKBPLQ9UIM3 349 aa9.03□□□□□ -0.96
CPNE3-213ENST00000622183 ZC3H4Q9UPT8 1303 aaKnown RBP9.03□□□□□ -0.96
CPNE3-213ENST00000622183 NR1H3Q13133 447 aa9.02□□□□□ -0.97
CPNE3-213ENST00000622183 NYAP1Q6ZVC0 841 aa9.02□□□□□ -0.97
CPNE3-213ENST00000622183 SPSB2Q99619 263 aa9.02□□□□□ -0.97
CPNE3-213ENST00000622183 TRAIPQ9BWF2 469 aa9.02□□□□□ -0.97
CPNE3-213ENST00000622183 PPP1R12CQ9BZL4 782 aa9.02□□□□□ -0.97
CPNE3-213ENST00000622183 MAP10Q9P2G4 905 aa9.02□□□□□ -0.97
CPNE3-213ENST00000622183 MMP16P51512 607 aa9.01□□□□□ -0.97
CPNE3-213ENST00000622183 EIF4G2P78344 907 aaKnown RBP eCLIP9.01□□□□□ -0.97
CPNE3-213ENST00000622183 CFAP70Q5T0N1 1121 aa9.01□□□□□ -0.97
CPNE3-213ENST00000622183 FAM160A2Q8N612 972 aaPredicted RBP9.01□□□□□ -0.97
CPNE3-213ENST00000622183 PBXIP1Q96AQ6 731 aa9.01□□□□□ -0.97
CPNE3-213ENST00000622183 PODXL2Q9NZ53 605 aa9.01□□□□□ -0.97
CPNE3-213ENST00000622183 ZBBXA8MT70 800 aa9□□□□□ -0.97
CPNE3-213ENST00000622183 FBXO45P0C2W1 286 aa9□□□□□ -0.97
CPNE3-213ENST00000622183 CCNYL3P0C7X3 344 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms