RNA–Protein interactions for RNA: ENST00000621967.4

FAM3A-222, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 1,901 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-222ENST00000621967 PIK3R4Q99570 1358 aa23.55■■□□□ 1.36
FAM3A-222ENST00000621967 DMRT2Q9Y5R5 561 aa23.55■■□□□ 1.36
FAM3A-222ENST00000621967 TRAK1Q9UPV9 953 aa23.53■■□□□ 1.36
FAM3A-222ENST00000621967 EIF3AQ14152 1382 aaKnown RBP23.53■■□□□ 1.36
FAM3A-222ENST00000621967 RALBP1Q15311 655 aa23.52■■□□□ 1.36
FAM3A-222ENST00000621967 MYBBP1AQ9BQG0 1328 aaKnown RBP23.52■■□□□ 1.36
FAM3A-222ENST00000621967 NUDCQ9Y266 331 aa23.51■■□□□ 1.35
FAM3A-222ENST00000621967 RNF123Q5XPI4 1314 aa23.5■■□□□ 1.35
FAM3A-222ENST00000621967 PTPRUQ92729 1446 aa23.5■■□□□ 1.35
FAM3A-222ENST00000621967 KNDC1Q76NI1 1749 aa23.49■■□□□ 1.35
FAM3A-222ENST00000621967 ANP32EQ9BTT0 268 aa23.49■■□□□ 1.35
FAM3A-222ENST00000621967 AMOTL2Q9Y2J4 779 aa23.49■■□□□ 1.35
FAM3A-222ENST00000621967 ABCC11Q96J66 1382 aa23.49■■□□□ 1.35
FAM3A-222ENST00000621967 TMC1Q8TDI8 760 aa23.49■■□□□ 1.35
FAM3A-222ENST00000621967 CHD2O14647 1828 aaKnown RBP23.48■■□□□ 1.35
FAM3A-222ENST00000621967 ARHGEF28Q8N1W1 1705 aaKnown RBP23.48■■□□□ 1.35
FAM3A-222ENST00000621967 XRN1Q8IZH2 1706 aaKnown RBP23.47■■□□□ 1.35
FAM3A-222ENST00000621967 PARD3Q8TEW0 1356 aa23.47■■□□□ 1.35
FAM3A-222ENST00000621967 TECPR2O15040 1411 aa23.47■■□□□ 1.35
FAM3A-222ENST00000621967 CNGB1Q14028 1251 aaPredicted RBP23.47■■□□□ 1.35
FAM3A-222ENST00000621967 CPS1P31327 1500 aa23.46■■□□□ 1.35
FAM3A-222ENST00000621967 DLC1Q96QB1 1528 aa23.46■■□□□ 1.35
FAM3A-222ENST00000621967 NWD1Q149M9 1564 aa23.45■■□□□ 1.34
FAM3A-222ENST00000621967 KCNA6P17658 529 aa23.44■■□□□ 1.34
FAM3A-222ENST00000621967 PTCH1Q13635 1447 aa23.44■■□□□ 1.34
FAM3A-222ENST00000621967 POGKQ9P215 609 aa23.43■■□□□ 1.34
FAM3A-222ENST00000621967 CENPJQ9HC77 1338 aaPredicted RBP23.43■■□□□ 1.34
FAM3A-222ENST00000621967 PRAM1Q96QH2 718 aa23.43■■□□□ 1.34
FAM3A-222ENST00000621967 ROBO2Q9HCK4 1378 aa23.42■■□□□ 1.34
FAM3A-222ENST00000621967 TESK2Q96S53 571 aa23.42■■□□□ 1.34
FAM3A-222ENST00000621967 FAM135BQ49AJ0 1406 aa23.41■■□□□ 1.34
FAM3A-222ENST00000621967 PER1O15534 1290 aaPredicted RBP23.4■■□□□ 1.34
FAM3A-222ENST00000621967 SAFB2Q14151 953 aaKnown RBP eCLIP23.4■■□□□ 1.34
FAM3A-222ENST00000621967 DISP3Q9P2K9 1392 aa23.4■■□□□ 1.34
FAM3A-222ENST00000621967 NKTRP30414 1462 aaKnown RBP23.4■■□□□ 1.34
FAM3A-222ENST00000621967 QRICH2Q9H0J4 1663 aa23.4■■□□□ 1.34
FAM3A-222ENST00000621967 SIRT1Q96EB6 747 aa23.39■■□□□ 1.34
FAM3A-222ENST00000621967 WAPLQ7Z5K2 1190 aa23.39■■□□□ 1.33
FAM3A-222ENST00000621967 ZNF335Q9H4Z2 1342 aaPredicted RBP23.38■■□□□ 1.33
FAM3A-222ENST00000621967 FANCIQ9NVI1 1328 aa23.38■■□□□ 1.33
FAM3A-222ENST00000621967 PLEKHH1Q9ULM0 1364 aa23.38■■□□□ 1.33
FAM3A-222ENST00000621967 B4GALNT3Q6L9W6 998 aa23.37■■□□□ 1.33
FAM3A-222ENST00000621967 NLRP13Q86W25 1043 aa23.37■■□□□ 1.33
FAM3A-222ENST00000621967 STRCP1A6NGW2 1772 aa23.37■■□□□ 1.33
FAM3A-222ENST00000621967 INSRP06213 1382 aa23.34■■□□□ 1.33
FAM3A-222ENST00000621967 SBNO2Q9Y2G9 1366 aa23.34■■□□□ 1.33
FAM3A-222ENST00000621967 PROSER2Q86WR7 435 aaPredicted RBP23.33■■□□□ 1.32
FAM3A-222ENST00000621967 MINK1Q8N4C8 1332 aaPredicted RBP23.33■■□□□ 1.32
FAM3A-222ENST00000621967 SLC24A1O60721 1099 aa23.31■■□□□ 1.32
FAM3A-222ENST00000621967 TMF1P82094 1093 aa23.3■■□□□ 1.32
FAM3A-222ENST00000621967 C14orf37Q86TY3 774 aa23.29■■□□□ 1.32
FAM3A-222ENST00000621967 RBM33Q96EV2 1170 aaKnown RBP23.29■■□□□ 1.32
FAM3A-222ENST00000621967 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.28■■□□□ 1.32
FAM3A-222ENST00000621967 TMEM94Q12767 1356 aa23.28■■□□□ 1.32
FAM3A-222ENST00000621967 BLMP54132 1417 aaPredicted RBP23.27■■□□□ 1.32
FAM3A-222ENST00000621967 EVC2Q86UK5 1308 aa23.26■■□□□ 1.31
FAM3A-222ENST00000621967 MSH5O43196 834 aa23.26■■□□□ 1.31
FAM3A-222ENST00000621967 NALCNQ8IZF0 1738 aa23.26■■□□□ 1.31
FAM3A-222ENST00000621967 ADGRL3Q9HAR2 1447 aa23.25■■□□□ 1.31
FAM3A-222ENST00000621967 ADGRB2O60241 1585 aa23.25■■□□□ 1.31
FAM3A-222ENST00000621967 LRRC7Q96NW7 1537 aa23.25■■□□□ 1.31
FAM3A-222ENST00000621967 MYOM1P52179 1685 aa23.25■■□□□ 1.31
FAM3A-222ENST00000621967 TULP4Q9NRJ4 1543 aa23.25■■□□□ 1.31
FAM3A-222ENST00000621967 PANK3Q9H999 370 aa23.24■■□□□ 1.31
FAM3A-222ENST00000621967 PDE3BQ13370 1112 aa23.23■■□□□ 1.31
FAM3A-222ENST00000621967 NCOA3Q9Y6Q9 1424 aa23.23■■□□□ 1.31
FAM3A-222ENST00000621967 CDCA8Q53HL2 280 aa23.23■■□□□ 1.31
FAM3A-222ENST00000621967 SENP3-EIF4A1A0A087X0R7 540 aa23.21■■□□□ 1.31
FAM3A-222ENST00000621967 SRPK2P78362 688 aaKnown RBP23.21■■□□□ 1.31
FAM3A-222ENST00000621967 LTBP4Q8N2S1 1624 aa23.21■■□□□ 1.31
FAM3A-222ENST00000621967 WASLO00401 505 aaPredicted RBP23.21■■□□□ 1.31
FAM3A-222ENST00000621967 CDC42BPGQ6DT37 1551 aa23.2■■□□□ 1.3
FAM3A-222ENST00000621967 CDK19Q9BWU1 502 aa23.2■■□□□ 1.3
FAM3A-222ENST00000621967 XIRP1Q702N8 1843 aaKnown RBP23.19■■□□□ 1.3
FAM3A-222ENST00000621967 CC2D1BQ5T0F9 858 aaKnown RBP23.18■■□□□ 1.3
FAM3A-222ENST00000621967 MSH6P52701 1360 aa23.18■■□□□ 1.3
FAM3A-222ENST00000621967 CCDC136Q96JN2 1154 aa23.18■■□□□ 1.3
FAM3A-222ENST00000621967 C19orf44Q9H6X5 657 aa23.18■■□□□ 1.3
FAM3A-222ENST00000621967 CABP2Q9NPB3 220 aa23.18■■□□□ 1.3
FAM3A-222ENST00000621967 RRP1P56182 461 aaKnown RBP23.16■■□□□ 1.3
FAM3A-222ENST00000621967 DCCP43146 1447 aa23.14■■□□□ 1.3
FAM3A-222ENST00000621967 FMN2Q9NZ56 1722 aa23.14■■□□□ 1.29
FAM3A-222ENST00000621967 ATAD2Q6PL18 1390 aa23.14■■□□□ 1.29
FAM3A-222ENST00000621967 ATF3P18847 181 aa23.14■■□□□ 1.29
FAM3A-222ENST00000621967 RCAN3Q9UKA8 241 aa23.14■■□□□ 1.29
FAM3A-222ENST00000621967 NUTM2FA1L443 756 aa23.13■■□□□ 1.29
FAM3A-222ENST00000621967 PUS7Q96PZ0 661 aaKnown RBP23.13■■□□□ 1.29
FAM3A-222ENST00000621967 ATP7BP35670 1465 aa23.11■■□□□ 1.29
FAM3A-222ENST00000621967 CADPS2Q86UW7 1296 aa23.1■■□□□ 1.29
FAM3A-222ENST00000621967 NUDT16Q96DE0 195 aaKnown RBP23.1■■□□□ 1.29
FAM3A-222ENST00000621967 ANKARQ7Z5J8 1434 aa23.09■■□□□ 1.29
FAM3A-222ENST00000621967 NPC1L1Q9UHC9 1359 aa23.09■■□□□ 1.29
FAM3A-222ENST00000621967 PRR36Q9H6K5 1346 aa23.08■■□□□ 1.28
FAM3A-222ENST00000621967 AMER1Q5JTC6 1135 aaPredicted RBP23.08■■□□□ 1.28
FAM3A-222ENST00000621967 USP32Q8NFA0 1604 aa23.07■■□□□ 1.28
FAM3A-222ENST00000621967 ITSN1Q15811 1721 aa23.07■■□□□ 1.28
FAM3A-222ENST00000621967 KNSTRNQ9Y448 316 aa23.06■■□□□ 1.28
FAM3A-222ENST00000621967 CCDC61Q9Y6R9 512 aa23.06■■□□□ 1.28
FAM3A-222ENST00000621967 SALL2Q9Y467 1007 aaPredicted RBP23.06■■□□□ 1.28
FAM3A-222ENST00000621967 NINLQ9Y2I6 1382 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms