RNA–Protein interactions for RNA: ENST00000613916.1

PVT1-222, Transcript of Pvt1 oncogene, human

Gene PVT1, Length 137 nt, Biotype misc RNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-222	ENST00000613916	PLEKHG1	Q9ULL1	1385 aa		10.31	□□□□□ -0.76
PVT1-222	ENST00000613916	ARHGEF28	Q8N1W1	1705 aa	Known RBP	10.31	□□□□□ -0.76
PVT1-222	ENST00000613916	ASXL1	Q8IXJ9	1541 aa		10.31	□□□□□ -0.76
PVT1-222	ENST00000613916	EP400	Q96L91	3159 aa		10.3	□□□□□ -0.76
PVT1-222	ENST00000613916	CCDC7	Q96M83	1385 aa		10.3	□□□□□ -0.76
PVT1-222	ENST00000613916	CFAP70	Q5T0N1	1121 aa		10.3	□□□□□ -0.76
PVT1-222	ENST00000613916	NHSL1	Q5SYE7	1610 aa		10.29	□□□□□ -0.76
PVT1-222	ENST00000613916	ST20-MTHFS	A0A0A6YYL1	179 aa		10.29	□□□□□ -0.76
PVT1-222	ENST00000613916	C14orf93	Q9H972	538 aa	Known RBP	10.29	□□□□□ -0.76
PVT1-222	ENST00000613916	STAG3	Q9UJ98	1225 aa		10.29	□□□□□ -0.76
PVT1-222	ENST00000613916	QRICH2	Q9H0J4	1663 aa		10.28	□□□□□ -0.76
PVT1-222	ENST00000613916	DCC	P43146	1447 aa		10.28	□□□□□ -0.76
PVT1-222	ENST00000613916	RIMS2	Q9UQ26	1411 aa		10.28	□□□□□ -0.76
PVT1-222	ENST00000613916	VGF	O15240	615 aa	Predicted RBP	10.28	□□□□□ -0.76
PVT1-222	ENST00000613916	DDX10	Q13206	875 aa	Known RBP	10.28	□□□□□ -0.76
PVT1-222	ENST00000613916	NUTM2D	Q5VT03	806 aa	Predicted RBP	10.28	□□□□□ -0.76
PVT1-222	ENST00000613916	AFF2	P51816	1311 aa		10.28	□□□□□ -0.76
PVT1-222	ENST00000613916	KIF7	Q2M1P5	1343 aa		10.28	□□□□□ -0.76
PVT1-222	ENST00000613916	CADPS2	Q86UW7	1296 aa		10.27	□□□□□ -0.77
PVT1-222	ENST00000613916	PIK3R4	Q99570	1358 aa		10.26	□□□□□ -0.77
PVT1-222	ENST00000613916	MIER1	Q8N108	512 aa		10.26	□□□□□ -0.77
PVT1-222	ENST00000613916	TESK2	Q96S53	571 aa		10.26	□□□□□ -0.77
PVT1-222	ENST00000613916	ADAMTS13	Q76LX8	1427 aa		10.25	□□□□□ -0.77
PVT1-222	ENST00000613916	RBM6	P78332	1123 aa	Known RBP	10.25	□□□□□ -0.77
PVT1-222	ENST00000613916	BRINP3	Q76B58	766 aa		10.25	□□□□□ -0.77
PVT1-222	ENST00000613916	C19orf44	Q9H6X5	657 aa		10.25	□□□□□ -0.77
PVT1-222	ENST00000613916	TBX22	Q9Y458	520 aa		10.25	□□□□□ -0.77
PVT1-222	ENST00000613916	ATAD2	Q6PL18	1390 aa		10.25	□□□□□ -0.77
PVT1-222	ENST00000613916	MYOM1	P52179	1685 aa		10.25	□□□□□ -0.77
PVT1-222	ENST00000613916	KNDC1	Q76NI1	1749 aa		10.24	□□□□□ -0.77
PVT1-222	ENST00000613916	TMEM132E	Q6IEE7	984 aa		10.23	□□□□□ -0.77
PVT1-222	ENST00000613916	XRN1	Q8IZH2	1706 aa	Known RBP	10.23	□□□□□ -0.77
PVT1-222	ENST00000613916	MST1R	Q04912	1400 aa		10.23	□□□□□ -0.77
PVT1-222	ENST00000613916	ATF3	P18847	181 aa		10.22	□□□□□ -0.77
PVT1-222	ENST00000613916	PNPLA6	Q8IY17	1366 aa		10.22	□□□□□ -0.77
PVT1-222	ENST00000613916	NUTM2B	A6NNL0	878 aa	Predicted RBP	10.21	□□□□□ -0.77
PVT1-222	ENST00000613916	NUTM2E	B1AL46	878 aa	Predicted RBP	10.21	□□□□□ -0.77
PVT1-222	ENST00000613916	NUTM2A	Q8IVF1	878 aa	Predicted RBP	10.21	□□□□□ -0.77
PVT1-222	ENST00000613916	LRP5	O75197	1615 aa		10.2	□□□□□ -0.78
PVT1-222	ENST00000613916	EIF3A	Q14152	1382 aa	Known RBP	10.2	□□□□□ -0.78
PVT1-222	ENST00000613916	C14orf37	Q86TY3	774 aa		10.2	□□□□□ -0.78
PVT1-222	ENST00000613916	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	10.2	□□□□□ -0.78
PVT1-222	ENST00000613916	PTPRU	Q92729	1446 aa		10.2	□□□□□ -0.78
PVT1-222	ENST00000613916	BCAN	Q96GW7	911 aa		10.2	□□□□□ -0.78
PVT1-222	ENST00000613916	QTRT2	Q9H974	415 aa	Known RBP	10.2	□□□□□ -0.78
PVT1-222	ENST00000613916	ZRANB1	Q9UGI0	708 aa		10.2	□□□□□ -0.78
PVT1-222	ENST00000613916	SBNO2	Q9Y2G9	1366 aa		10.2	□□□□□ -0.78
PVT1-222	ENST00000613916	DLC1	Q96QB1	1528 aa		10.19	□□□□□ -0.78
PVT1-222	ENST00000613916	YTHDC2	Q9H6S0	1430 aa	Known RBP	10.19	□□□□□ -0.78
PVT1-222	ENST00000613916	HDGF	P51858	240 aa	Known RBP	10.19	□□□□□ -0.78
PVT1-222	ENST00000613916	NGLY1	Q96IV0	654 aa		10.19	□□□□□ -0.78
PVT1-222	ENST00000613916	TRAK1	Q9UPV9	953 aa		10.19	□□□□□ -0.78
PVT1-222	ENST00000613916	LRRC59	Q96AG4	307 aa	Known RBP	10.18	□□□□□ -0.78
PVT1-222	ENST00000613916	C8orf37	Q96NL8	207 aa		10.18	□□□□□ -0.78
PVT1-222	ENST00000613916	CENPJ	Q9HC77	1338 aa	Predicted RBP	10.17	□□□□□ -0.78
PVT1-222	ENST00000613916	TMF1	P82094	1093 aa		10.17	□□□□□ -0.78
PVT1-222	ENST00000613916	COL22A1	Q8NFW1	1626 aa	Predicted RBP	10.17	□□□□□ -0.78
PVT1-222	ENST00000613916	TULP4	Q9NRJ4	1543 aa		10.17	□□□□□ -0.78
PVT1-222	ENST00000613916	ATRN	O75882	1429 aa		10.16	□□□□□ -0.78
PVT1-222	ENST00000613916	PTCH1	Q13635	1447 aa		10.16	□□□□□ -0.78
PVT1-222	ENST00000613916	NALCN	Q8IZF0	1738 aa		10.16	□□□□□ -0.78
PVT1-222	ENST00000613916	MET	P08581	1390 aa		10.16	□□□□□ -0.78
PVT1-222	ENST00000613916	LRPPRC	P42704	1394 aa	Known RBP	10.16	□□□□□ -0.78
PVT1-222	ENST00000613916	CCDC125	Q86Z20	511 aa		10.16	□□□□□ -0.78
PVT1-222	ENST00000613916	ADGRL3	Q9HAR2	1447 aa		10.16	□□□□□ -0.78
PVT1-222	ENST00000613916	POLR3GL	Q9BT43	218 aa		10.15	□□□□□ -0.78
PVT1-222	ENST00000613916	TECPR2	O15040	1411 aa		10.15	□□□□□ -0.79
PVT1-222	ENST00000613916	ABCC11	Q96J66	1382 aa		10.14	□□□□□ -0.79
PVT1-222	ENST00000613916	FNBP4	Q8N3X1	1017 aa	Predicted RBP	10.14	□□□□□ -0.79
PVT1-222	ENST00000613916	STK26	Q9P289	416 aa		10.14	□□□□□ -0.79
PVT1-222	ENST00000613916	TRPC5	Q9UL62	973 aa	Predicted RBP	10.14	□□□□□ -0.79
PVT1-222	ENST00000613916	AMOTL2	Q9Y2J4	779 aa		10.14	□□□□□ -0.79
PVT1-222	ENST00000613916	PER1	O15534	1290 aa	Predicted RBP	10.12	□□□□□ -0.79
PVT1-222	ENST00000613916	SLC24A1	O60721	1099 aa		10.12	□□□□□ -0.79
PVT1-222	ENST00000613916	USP21	Q9UK80	565 aa		10.12	□□□□□ -0.79
PVT1-222	ENST00000613916	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	10.12	□□□□□ -0.79
PVT1-222	ENST00000613916	PLEKHH1	Q9ULM0	1364 aa		10.12	□□□□□ -0.79
PVT1-222	ENST00000613916	C1orf167	Q5SNV9	1468 aa		10.11	□□□□□ -0.79
PVT1-222	ENST00000613916	SOS2	Q07890	1332 aa	Predicted RBP	10.11	□□□□□ -0.79
PVT1-222	ENST00000613916	MARF1	Q9Y4F3	1742 aa	Known RBP	10.11	□□□□□ -0.79
PVT1-222	ENST00000613916	BLM	P54132	1417 aa	Predicted RBP	10.11	□□□□□ -0.79
PVT1-222	ENST00000613916	ANP32C	O43423	234 aa		10.11	□□□□□ -0.79
PVT1-222	ENST00000613916	ADAMTS2	O95450	1211 aa		10.11	□□□□□ -0.79
PVT1-222	ENST00000613916	CDCA8	Q53HL2	280 aa		10.11	□□□□□ -0.79
PVT1-222	ENST00000613916	RGPD8	O14715	1765 aa	Predicted RBP	10.11	□□□□□ -0.79
PVT1-222	ENST00000613916	BCL9L	Q86UU0	1499 aa		10.1	□□□□□ -0.79
PVT1-222	ENST00000613916	DDX17	Q92841	729 aa	Known RBP	10.1	□□□□□ -0.79
PVT1-222	ENST00000613916	SIRT1	Q96EB6	747 aa		10.1	□□□□□ -0.79
PVT1-222	ENST00000613916	PRAM1	Q96QH2	718 aa		10.1	□□□□□ -0.79
PVT1-222	ENST00000613916	PRKRIP1	Q9H875	184 aa	Predicted RBP	10.1	□□□□□ -0.79
PVT1-222	ENST00000613916	ADGRB2	O60241	1585 aa		10.09	□□□□□ -0.79
PVT1-222	ENST00000613916	CCER2	I3L3R5	266 aa		10.09	□□□□□ -0.79
PVT1-222	ENST00000613916	SAFB2	Q14151	953 aa	Known RBP eCLIP	10.09	□□□□□ -0.79
PVT1-222	ENST00000613916	WAPL	Q7Z5K2	1190 aa		10.09	□□□□□ -0.79
PVT1-222	ENST00000613916	PUS7	Q96PZ0	661 aa	Known RBP	10.09	□□□□□ -0.79
PVT1-222	ENST00000613916	PANK3	Q9H999	370 aa		10.09	□□□□□ -0.79
PVT1-222	ENST00000613916	AKAP12	Q02952	1782 aa		10.09	□□□□□ -0.79
PVT1-222	ENST00000613916	USP32	Q8NFA0	1604 aa		10.08	□□□□□ -0.8
PVT1-222	ENST00000613916	ROBO2	Q9HCK4	1378 aa		10.08	□□□□□ -0.8
PVT1-222	ENST00000613916	GLI3	P10071	1580 aa		10.08	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms