RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 SCAF11Q99590 1463 aaKnown RBP12.53□□□□□ -0.4
LIG3-216ENST00000593099 RIPK4P57078 832 aa12.53□□□□□ -0.4
LIG3-216ENST00000593099 RUNDC1Q96C34 613 aa12.53□□□□□ -0.4
LIG3-216ENST00000593099 TATP17735 454 aaPredicted RBP12.52□□□□□ -0.4
LIG3-216ENST00000593099 ZC3H6P61129 1189 aaKnown RBP12.52□□□□□ -0.4
LIG3-216ENST00000593099 PLEKHO1Q53GL0 409 aaPredicted RBP12.52□□□□□ -0.4
LIG3-216ENST00000593099 ANP32AP39687 249 aaKnown RBP12.52□□□□□ -0.41
LIG3-216ENST00000593099 ARHGEF5Q12774 1597 aa12.52□□□□□ -0.41
LIG3-216ENST00000593099 TMX4Q9H1E5 349 aaPredicted RBP12.52□□□□□ -0.41
LIG3-216ENST00000593099 TSPOAP1O95153 1857 aa12.52□□□□□ -0.41
LIG3-216ENST00000593099 GTF2E1P29083 439 aaPredicted RBP12.52□□□□□ -0.41
LIG3-216ENST00000593099 RCAN3Q9UKA8 241 aa12.52□□□□□ -0.41
LIG3-216ENST00000593099 HSP90AA1P07900 732 aaKnown RBP12.51□□□□□ -0.41
LIG3-216ENST00000593099 KRT28Q7Z3Y7 464 aa12.51□□□□□ -0.41
LIG3-216ENST00000593099 TTC37Q6PGP7 1564 aa12.51□□□□□ -0.41
LIG3-216ENST00000593099 PPP2R1AP30153 589 aa12.5□□□□□ -0.41
LIG3-216ENST00000593099 C19orf44Q9H6X5 657 aa12.5□□□□□ -0.41
LIG3-216ENST00000593099 GAS2L2Q8NHY3 880 aa12.5□□□□□ -0.41
LIG3-216ENST00000593099 MSH5O43196 834 aa12.49□□□□□ -0.41
LIG3-216ENST00000593099 RIMBP3CA6NJZ7 1639 aa12.49□□□□□ -0.41
LIG3-216ENST00000593099 RIMBP3BA6NNM3 1639 aa12.49□□□□□ -0.41
LIG3-216ENST00000593099 RIMBP3Q9UFD9 1639 aa12.49□□□□□ -0.41
LIG3-216ENST00000593099 ELL2O00472 640 aaPredicted RBP12.49□□□□□ -0.41
LIG3-216ENST00000593099 ABCC1P33527 1531 aa12.49□□□□□ -0.41
LIG3-216ENST00000593099 E9PSI1 815 aa12.49□□□□□ -0.41
LIG3-216ENST00000593099 PODXL2Q9NZ53 605 aa12.49□□□□□ -0.41
LIG3-216ENST00000593099 KCNA6P17658 529 aa12.48□□□□□ -0.41
LIG3-216ENST00000593099 SLC4A10Q6U841 1118 aa12.48□□□□□ -0.41
LIG3-216ENST00000593099 NSD3Q9BZ95 1437 aa12.47□□□□□ -0.41
LIG3-216ENST00000593099 NPHP3Q7Z494 1330 aa12.47□□□□□ -0.41
LIG3-216ENST00000593099 ADAMTS2O95450 1211 aa12.47□□□□□ -0.41
LIG3-216ENST00000593099 CDK11BP21127 795 aaKnown RBP12.47□□□□□ -0.41
LIG3-216ENST00000593099 ITPRIPQ8IWB1 547 aa12.47□□□□□ -0.41
LIG3-216ENST00000593099 BRD4O60885 1362 aaPredicted RBP12.47□□□□□ -0.41
LIG3-216ENST00000593099 CASC1Q6TDU7 716 aa12.47□□□□□ -0.41
LIG3-216ENST00000593099 SAMD9LQ8IVG5 1584 aa12.47□□□□□ -0.41
LIG3-216ENST00000593099 EIF2S2P20042 333 aaKnown RBP12.46□□□□□ -0.41
LIG3-216ENST00000593099 PRKAR2BP31323 418 aa12.46□□□□□ -0.41
LIG3-216ENST00000593099 GNAI1P63096 354 aa12.46□□□□□ -0.41
LIG3-216ENST00000593099 RRS1Q15050 365 aaKnown RBP12.46□□□□□ -0.41
LIG3-216ENST00000593099 SULT6B1Q6IMI4 303 aa12.46□□□□□ -0.41
LIG3-216ENST00000593099 TAF7LQ5H9L4 462 aa12.46□□□□□ -0.42
LIG3-216ENST00000593099 NGLY1Q96IV0 654 aa12.46□□□□□ -0.42
LIG3-216ENST00000593099 TSPYL4Q9UJ04 414 aa12.46□□□□□ -0.42
LIG3-216ENST00000593099 SPG7Q9UQ90 795 aa12.45□□□□□ -0.42
LIG3-216ENST00000593099 PZPP20742 1482 aa12.45□□□□□ -0.42
LIG3-216ENST00000593099 MAST1Q9Y2H9 1570 aa12.45□□□□□ -0.42
LIG3-216ENST00000593099 NME9Q86XW9 330 aa12.45□□□□□ -0.42
LIG3-216ENST00000593099 CHMP3Q9Y3E7 222 aa12.45□□□□□ -0.42
LIG3-216ENST00000593099 TMEM2Q9UHN6 1383 aa12.45□□□□□ -0.42
LIG3-216ENST00000593099 ACEP12821 1306 aa12.45□□□□□ -0.42
LIG3-216ENST00000593099 SF3B2Q13435 895 aaKnown RBP12.45□□□□□ -0.42
LIG3-216ENST00000593099 ARAP3Q8WWN8 1544 aa12.45□□□□□ -0.42
LIG3-216ENST00000593099 KDM6BO15054 1643 aa12.44□□□□□ -0.42
LIG3-216ENST00000593099 ADCY10Q96PN6 1610 aa12.44□□□□□ -0.42
LIG3-216ENST00000593099 PPP4R2Q9NY27 417 aa12.44□□□□□ -0.42
LIG3-216ENST00000593099 PREX2Q70Z35 1606 aa12.44□□□□□ -0.42
LIG3-216ENST00000593099 LMTK3Q96Q04 1460 aa12.44□□□□□ -0.42
LIG3-216ENST00000593099 NPATQ14207 1427 aa12.44□□□□□ -0.42
LIG3-216ENST00000593099 NINLQ9Y2I6 1382 aa12.44□□□□□ -0.42
LIG3-216ENST00000593099 DDX54Q8TDD1 881 aaKnown RBP12.44□□□□□ -0.42
LIG3-216ENST00000593099 ZNF530Q6P9A1 599 aaPredicted RBP12.43□□□□□ -0.42
LIG3-216ENST00000593099 NEXNQ0ZGT2 675 aa12.43□□□□□ -0.42
LIG3-216ENST00000593099 PRAG1Q86YV5 1406 aa12.43□□□□□ -0.42
LIG3-216ENST00000593099 HECW2Q9P2P5 1572 aa12.43□□□□□ -0.42
LIG3-216ENST00000593099 CLUAP1Q96AJ1 413 aa12.42□□□□□ -0.42
LIG3-216ENST00000593099 ADAMTS8Q9UP79 889 aa12.42□□□□□ -0.42
LIG3-216ENST00000593099 DDX58O95786 925 aaKnown RBP12.42□□□□□ -0.42
LIG3-216ENST00000593099 TCP11L2Q8N4U5 519 aa12.42□□□□□ -0.42
LIG3-216ENST00000593099 HMMRO75330 724 aa12.41□□□□□ -0.42
LIG3-216ENST00000593099 HSP90AB1P08238 724 aaKnown RBP12.41□□□□□ -0.42
LIG3-216ENST00000593099 RGS3P49796 1198 aa12.41□□□□□ -0.42
LIG3-216ENST00000593099 LTKP29376 864 aa12.4□□□□□ -0.43
LIG3-216ENST00000593099 APBB1O00213 710 aa12.39□□□□□ -0.43
LIG3-216ENST00000593099 NECTIN2Q92692 538 aa12.39□□□□□ -0.43
LIG3-216ENST00000593099 YTHDC2Q9H6S0 1430 aaKnown RBP12.39□□□□□ -0.43
LIG3-216ENST00000593099 CABP4P57796 275 aa12.39□□□□□ -0.43
LIG3-216ENST00000593099 TTC21AQ8NDW8 1320 aa12.39□□□□□ -0.43
LIG3-216ENST00000593099 ARHGEF12Q9NZN5 1544 aa12.39□□□□□ -0.43
LIG3-216ENST00000593099 RWDD1Q9H446 243 aaPredicted RBP12.39□□□□□ -0.43
LIG3-216ENST00000593099 GORABQ5T7V8 394 aa12.38□□□□□ -0.43
LIG3-216ENST00000593099 ZBED9Q6R2W3 1325 aa12.38□□□□□ -0.43
LIG3-216ENST00000593099 RBM42Q9BTD8 480 aaKnown RBP12.38□□□□□ -0.43
LIG3-216ENST00000593099 BCL2L13Q9BXK5 485 aa12.38□□□□□ -0.43
LIG3-216ENST00000593099 RALGAPBQ86X10 1494 aa12.38□□□□□ -0.43
LIG3-216ENST00000593099 SHROOM2Q13796 1616 aa12.38□□□□□ -0.43
LIG3-216ENST00000593099 PUS7Q96PZ0 661 aaKnown RBP12.38□□□□□ -0.43
LIG3-216ENST00000593099 ANP32EQ9BTT0 268 aa12.38□□□□□ -0.43
LIG3-216ENST00000593099 KDM5DQ9BY66 1539 aa12.38□□□□□ -0.43
LIG3-216ENST00000593099 ZKSCAN2Q63HK3 967 aa12.37□□□□□ -0.43
LIG3-216ENST00000593099 G3V3G9 751 aa12.37□□□□□ -0.43
LIG3-216ENST00000593099 FCHSD2O94868 740 aa12.37□□□□□ -0.43
LIG3-216ENST00000593099 DCAF8Q5TAQ9 597 aa12.37□□□□□ -0.43
LIG3-216ENST00000593099 PNISRQ8TF01 805 aaKnown RBP12.37□□□□□ -0.43
LIG3-216ENST00000593099 LRRC59Q96AG4 307 aaKnown RBP12.37□□□□□ -0.43
LIG3-216ENST00000593099 API5Q9BZZ5 524 aaKnown RBP12.37□□□□□ -0.43
LIG3-216ENST00000593099 TTC21BQ7Z4L5 1316 aa12.37□□□□□ -0.43
LIG3-216ENST00000593099 C11orf95C9JLR9 678 aaPredicted RBP12.36□□□□□ -0.43
LIG3-216ENST00000593099 FKBP5Q13451 457 aaPredicted RBP12.36□□□□□ -0.43
LIG3-216ENST00000593099 NSD2O96028 1365 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms