RNA–Protein interactions for RNA: ENST00000578469.1

SREBF1-218, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 3

Gene SREBF1, Length 588 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-218ENST00000578469 RIMS2Q9UQ26 1411 aa23.34■■□□□ 1.33
SREBF1-218ENST00000578469 CHD2O14647 1828 aaKnown RBP23.33■■□□□ 1.33
SREBF1-218ENST00000578469 C14orf37Q86TY3 774 aa23.32■■□□□ 1.32
SREBF1-218ENST00000578469 NCOA3Q9Y6Q9 1424 aa23.32■■□□□ 1.32
SREBF1-218ENST00000578469 MYO5BQ9ULV0 1848 aa23.31■■□□□ 1.32
SREBF1-218ENST00000578469 CDCA8Q53HL2 280 aa23.31■■□□□ 1.32
SREBF1-218ENST00000578469 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.31■■□□□ 1.32
SREBF1-218ENST00000578469 YTHDC1Q96MU7 727 aaKnown RBP23.31■■□□□ 1.32
SREBF1-218ENST00000578469 DIP2AQ14689 1571 aa23.29■■□□□ 1.32
SREBF1-218ENST00000578469 COL16A1Q07092 1604 aaPredicted RBP23.29■■□□□ 1.32
SREBF1-218ENST00000578469 NUTM2DQ5VT03 806 aaPredicted RBP23.28■■□□□ 1.32
SREBF1-218ENST00000578469 SETD1AO15047 1707 aaKnown RBP23.28■■□□□ 1.32
SREBF1-218ENST00000578469 TBX22Q9Y458 520 aa23.27■■□□□ 1.32
SREBF1-218ENST00000578469 SPATA31A6Q5VVP1 1343 aa23.27■■□□□ 1.32
SREBF1-218ENST00000578469 MEX3CQ5U5Q3 659 aaKnown RBP23.26■■□□□ 1.31
SREBF1-218ENST00000578469 CADPS2Q86UW7 1296 aa23.25■■□□□ 1.31
SREBF1-218ENST00000578469 ADGRB1O14514 1584 aa23.24■■□□□ 1.31
SREBF1-218ENST00000578469 PIK3R4Q99570 1358 aa23.24■■□□□ 1.31
SREBF1-218ENST00000578469 ATF3P18847 181 aa23.23■■□□□ 1.31
SREBF1-218ENST00000578469 PRKRIP1Q9H875 184 aaPredicted RBP23.23■■□□□ 1.31
SREBF1-218ENST00000578469 AHDC1Q5TGY3 1603 aaPredicted RBP23.22■■□□□ 1.31
SREBF1-218ENST00000578469 ZNF772Q68DY9 489 aaPredicted RBP23.22■■□□□ 1.31
SREBF1-218ENST00000578469 C19orf44Q9H6X5 657 aa23.21■■□□□ 1.31
SREBF1-218ENST00000578469 CENPJQ9HC77 1338 aaPredicted RBP23.21■■□□□ 1.31
SREBF1-218ENST00000578469 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.2■■□□□ 1.3
SREBF1-218ENST00000578469 ADAMTS13Q76LX8 1427 aa23.2■■□□□ 1.3
SREBF1-218ENST00000578469 SBNO2Q9Y2G9 1366 aa23.2■■□□□ 1.3
SREBF1-218ENST00000578469 TMEM132EQ6IEE7 984 aa23.2■■□□□ 1.3
SREBF1-218ENST00000578469 TRAK1Q9UPV9 953 aa23.2■■□□□ 1.3
SREBF1-218ENST00000578469 SHPRHQ149N8 1683 aa23.19■■□□□ 1.3
SREBF1-218ENST00000578469 LRP6O75581 1613 aa23.19■■□□□ 1.3
SREBF1-218ENST00000578469 KTN1Q86UP2 1357 aaKnown RBP23.14■■□□□ 1.3
SREBF1-218ENST00000578469 DCCP43146 1447 aa23.14■■□□□ 1.29
SREBF1-218ENST00000578469 PANK3Q9H999 370 aa23.11■■□□□ 1.29
SREBF1-218ENST00000578469 AMOTL2Q9Y2J4 779 aa23.11■■□□□ 1.29
SREBF1-218ENST00000578469 QRICH2Q9H0J4 1663 aa23.09■■□□□ 1.29
SREBF1-218ENST00000578469 YTHDC2Q9H6S0 1430 aaKnown RBP23.09■■□□□ 1.29
SREBF1-218ENST00000578469 ASXL1Q8IXJ9 1541 aa23.09■■□□□ 1.29
SREBF1-218ENST00000578469 RALBP1Q15311 655 aa23.09■■□□□ 1.29
SREBF1-218ENST00000578469 BRINP3Q76B58 766 aa23.09■■□□□ 1.29
SREBF1-218ENST00000578469 STK26Q9P289 416 aa23.08■■□□□ 1.29
SREBF1-218ENST00000578469 ARHGEF28Q8N1W1 1705 aaKnown RBP23.08■■□□□ 1.28
SREBF1-218ENST00000578469 RXRBP28702 533 aa23.07■■□□□ 1.28
SREBF1-218ENST00000578469 UPF1Q92900 1129 aaKnown RBP eCLIP23.07■■□□□ 1.281e-9■■■□□ 19.2
SREBF1-218ENST00000578469 PTPRUQ92729 1446 aa23.07■■□□□ 1.28
SREBF1-218ENST00000578469 XRN1Q8IZH2 1706 aaKnown RBP23.06■■□□□ 1.28
SREBF1-218ENST00000578469 NUTM2BA6NNL0 878 aaPredicted RBP23.06■■□□□ 1.28
SREBF1-218ENST00000578469 NUTM2EB1AL46 878 aaPredicted RBP23.06■■□□□ 1.28
SREBF1-218ENST00000578469 PER1O15534 1290 aaPredicted RBP23.06■■□□□ 1.28
SREBF1-218ENST00000578469 NUTM2AQ8IVF1 878 aaPredicted RBP23.06■■□□□ 1.28
SREBF1-218ENST00000578469 PUS7Q96PZ0 661 aaKnown RBP23.06■■□□□ 1.28
SREBF1-218ENST00000578469 CDK12Q9NYV4 1490 aaPredicted RBP23.05■■□□□ 1.28
SREBF1-218ENST00000578469 MRS2Q9HD23 443 aa23.05■■□□□ 1.28
SREBF1-218ENST00000578469 EVC2Q86UK5 1308 aa23.05■■□□□ 1.28
SREBF1-218ENST00000578469 CNGB1Q14028 1251 aaPredicted RBP23.04■■□□□ 1.28
SREBF1-218ENST00000578469 POGKQ9P215 609 aa23.04■■□□□ 1.28
SREBF1-218ENST00000578469 LRPPRCP42704 1394 aaKnown RBP23.03■■□□□ 1.28
SREBF1-218ENST00000578469 NHSL1Q5SYE7 1610 aa23.02■■□□□ 1.28
SREBF1-218ENST00000578469 KNSTRNQ9Y448 316 aa23.02■■□□□ 1.28
SREBF1-218ENST00000578469 NRXN3Q9Y4C0 1643 aa23.01■■□□□ 1.27
SREBF1-218ENST00000578469 MST1RQ04912 1400 aa23.01■■□□□ 1.27
SREBF1-218ENST00000578469 DLC1Q96QB1 1528 aa23.01■■□□□ 1.27
SREBF1-218ENST00000578469 AFF2P51816 1311 aa23.01■■□□□ 1.27
SREBF1-218ENST00000578469 MYBBP1AQ9BQG0 1328 aaKnown RBP23.01■■□□□ 1.27
SREBF1-218ENST00000578469 LRRC59Q96AG4 307 aaKnown RBP23■■□□□ 1.27
SREBF1-218ENST00000578469 PRAM1Q96QH2 718 aa22.99■■□□□ 1.27
SREBF1-218ENST00000578469 ABCC11Q96J66 1382 aa22.99■■□□□ 1.27
SREBF1-218ENST00000578469 ADGRL3Q9HAR2 1447 aa22.99■■□□□ 1.27
SREBF1-218ENST00000578469 MYOM1P52179 1685 aa22.98■■□□□ 1.27
SREBF1-218ENST00000578469 PARD3Q8TEW0 1356 aa22.98■■□□□ 1.27
SREBF1-218ENST00000578469 CCDC184Q52MB2 194 aa22.96■■□□□ 1.27
SREBF1-218ENST00000578469 BRD4O60885 1362 aaPredicted RBP22.95■■□□□ 1.26
SREBF1-218ENST00000578469 SAFB2Q14151 953 aaKnown RBP eCLIP22.95■■□□□ 1.26
SREBF1-218ENST00000578469 TMC1Q8TDI8 760 aa22.95■■□□□ 1.26
SREBF1-218ENST00000578469 METP08581 1390 aa22.94■■□□□ 1.26
SREBF1-218ENST00000578469 CC2D1BQ5T0F9 858 aaKnown RBP22.94■■□□□ 1.26
SREBF1-218ENST00000578469 SIRT1Q96EB6 747 aa22.94■■□□□ 1.26
SREBF1-218ENST00000578469 C8orf37Q96NL8 207 aa22.94■■□□□ 1.26
SREBF1-218ENST00000578469 TULP4Q9NRJ4 1543 aa22.93■■□□□ 1.26
SREBF1-218ENST00000578469 NPC1L1Q9UHC9 1359 aa22.93■■□□□ 1.26
SREBF1-218ENST00000578469 PNPLA6Q8IY17 1366 aa22.92■■□□□ 1.26
SREBF1-218ENST00000578469 NALCNQ8IZF0 1738 aa22.92■■□□□ 1.26
SREBF1-218ENST00000578469 NLRP13Q86W25 1043 aa22.92■■□□□ 1.26
SREBF1-218ENST00000578469 MINK1Q8N4C8 1332 aaPredicted RBP22.91■■□□□ 1.26
SREBF1-218ENST00000578469 NINLQ9Y2I6 1382 aa22.9■■□□□ 1.26
SREBF1-218ENST00000578469 RBM6P78332 1123 aaKnown RBP22.9■■□□□ 1.26
SREBF1-218ENST00000578469 SRPK2P78362 688 aaKnown RBP22.9■■□□□ 1.26
SREBF1-218ENST00000578469 FAM9BQ8IZU0 186 aa22.9■■□□□ 1.26
SREBF1-218ENST00000578469 RGS12O14924 1447 aa22.9■■□□□ 1.26
SREBF1-218ENST00000578469 ATAD2Q6PL18 1390 aa22.89■■□□□ 1.26
SREBF1-218ENST00000578469 AMER1Q5JTC6 1135 aaPredicted RBP22.89■■□□□ 1.25
SREBF1-218ENST00000578469 TECPR2O15040 1411 aa22.89■■□□□ 1.25
SREBF1-218ENST00000578469 KNDC1Q76NI1 1749 aa22.88■■□□□ 1.25
SREBF1-218ENST00000578469 QTRT2Q9H974 415 aaKnown RBP22.88■■□□□ 1.25
SREBF1-218ENST00000578469 CABP2Q9NPB3 220 aa22.88■■□□□ 1.25
SREBF1-218ENST00000578469 PTCH1Q13635 1447 aa22.86■■□□□ 1.25
SREBF1-218ENST00000578469 HNRNPUQ00839 825 aaKnown RBP eCLIP22.86■■□□□ 1.25
SREBF1-218ENST00000578469 DDX17Q92841 729 aaKnown RBP22.86■■□□□ 1.25
SREBF1-218ENST00000578469 NGLY1Q96IV0 654 aa22.86■■□□□ 1.25
SREBF1-218ENST00000578469 SLC12A5Q9H2X9 1139 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms