RNA–Protein interactions for RNA: ENST00000575909.1

TOM1L1-222, Transcript of target of myb1 like 1 membrane trafficking protein, human

TSL 3

Gene TOM1L1, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1L1-222	ENST00000575909	ZFR	Q96KR1	1074 aa	Known RBP	11.62	□□□□□ -0.55
TOM1L1-222	ENST00000575909	TBC1D2B	Q9UPU7	963 aa		11.62	□□□□□ -0.55
TOM1L1-222	ENST00000575909	KMT5B	Q4FZB7	885 aa		11.61	□□□□□ -0.55
TOM1L1-222	ENST00000575909	NDUFB9	Q9Y6M9	179 aa		11.61	□□□□□ -0.55
TOM1L1-222	ENST00000575909	C6orf229	H3BNL8	230 aa		11.6	□□□□□ -0.55
TOM1L1-222	ENST00000575909	RNF40	O75150	1001 aa		11.6	□□□□□ -0.55
TOM1L1-222	ENST00000575909	CTDSPL2	Q05D32	466 aa		11.6	□□□□□ -0.55
TOM1L1-222	ENST00000575909	MRPL50	Q8N5N7	158 aa	Known RBP	11.6	□□□□□ -0.55
TOM1L1-222	ENST00000575909	GJD4	Q96KN9	370 aa	Predicted RBP	11.6	□□□□□ -0.55
TOM1L1-222	ENST00000575909	CFAP99	D6REC4	459 aa		11.57	□□□□□ -0.56
TOM1L1-222	ENST00000575909	LRCH3	Q96II8	777 aa		11.57	□□□□□ -0.56
TOM1L1-222	ENST00000575909	TSC1	Q92574	1164 aa		11.56	□□□□□ -0.56
TOM1L1-222	ENST00000575909	HS3ST6	Q96QI5	342 aa		11.56	□□□□□ -0.56
TOM1L1-222	ENST00000575909	PRR14	Q9BWN1	585 aa		11.56	□□□□□ -0.56
TOM1L1-222	ENST00000575909	ACTN4	O43707	911 aa	Known RBP	11.55	□□□□□ -0.56
TOM1L1-222	ENST00000575909	HMX1	Q9NP08	348 aa	Predicted RBP	11.55	□□□□□ -0.56
TOM1L1-222	ENST00000575909	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.55	□□□□□ -0.56
TOM1L1-222	ENST00000575909	WASHC4	Q2M389	1173 aa		11.54	□□□□□ -0.56
TOM1L1-222	ENST00000575909		Q3C1V9	767 aa		11.54	□□□□□ -0.56
TOM1L1-222	ENST00000575909	ADGRD1	Q6QNK2	874 aa		11.54	□□□□□ -0.56
TOM1L1-222	ENST00000575909	CALR3	Q96L12	384 aa	Known RBP	11.54	□□□□□ -0.56
TOM1L1-222	ENST00000575909	TRIM34	Q9BYJ4	488 aa		11.54	□□□□□ -0.56
TOM1L1-222	ENST00000575909	LSM11	P83369	360 aa	Known RBP eCLIP	11.53	□□□□□ -0.56
TOM1L1-222	ENST00000575909	MORN1	Q5T089	497 aa		11.53	□□□□□ -0.56
TOM1L1-222	ENST00000575909	LRRN4	Q8WUT4	740 aa		11.53	□□□□□ -0.56
TOM1L1-222	ENST00000575909	PDIA4	P13667	645 aa	Known RBP	11.52	□□□□□ -0.57
TOM1L1-222	ENST00000575909	IRF5	Q13568	498 aa		11.52	□□□□□ -0.57
TOM1L1-222	ENST00000575909	RETREG3	Q86VR2	466 aa		11.52	□□□□□ -0.57
TOM1L1-222	ENST00000575909	PRR7	Q8TB68	274 aa		11.52	□□□□□ -0.57
TOM1L1-222	ENST00000575909	GLMN	Q92990	594 aa		11.52	□□□□□ -0.57
TOM1L1-222	ENST00000575909	POTEB3	A0JP26	581 aa		11.51	□□□□□ -0.57
TOM1L1-222	ENST00000575909	POM121C	A8CG34	1229 aa		11.51	□□□□□ -0.57
TOM1L1-222	ENST00000575909	HR	O43593	1189 aa		11.51	□□□□□ -0.57
TOM1L1-222	ENST00000575909	POTEB	Q6S5H4	581 aa		11.51	□□□□□ -0.57
TOM1L1-222	ENST00000575909	SYMPK	Q92797	1274 aa	Known RBP	11.51	□□□□□ -0.57
TOM1L1-222	ENST00000575909	FAM163A	Q96GL9	167 aa	Predicted RBP	11.51	□□□□□ -0.57
TOM1L1-222	ENST00000575909	DESI1	Q6ICB0	168 aa		11.5	□□□□□ -0.57
TOM1L1-222	ENST00000575909	SLC27A5	Q9Y2P5	690 aa		11.5	□□□□□ -0.57
TOM1L1-222	ENST00000575909	ANKK1	Q8NFD2	765 aa		11.49	□□□□□ -0.57
TOM1L1-222	ENST00000575909	STAC3	Q96MF2	364 aa		11.49	□□□□□ -0.57
TOM1L1-222	ENST00000575909	PUS10	Q3MIT2	529 aa	Known RBP	11.48	□□□□□ -0.57
TOM1L1-222	ENST00000575909	GOLGA8CP	A6NN73	597 aa		11.47	□□□□□ -0.57
TOM1L1-222	ENST00000575909	GPR37L1	O60883	481 aa		11.47	□□□□□ -0.57
TOM1L1-222	ENST00000575909	SALL2	Q9Y467	1007 aa	Predicted RBP	11.47	□□□□□ -0.57
TOM1L1-222	ENST00000575909	PPP4C	P60510	307 aa		11.46	□□□□□ -0.57
TOM1L1-222	ENST00000575909	SOWAHB	A6NEL2	793 aa		11.45	□□□□□ -0.58
TOM1L1-222	ENST00000575909	PPP1R15A	O75807	674 aa	Predicted RBP	11.45	□□□□□ -0.58
TOM1L1-222	ENST00000575909	HDGFL1	Q5TGJ6	251 aa		11.45	□□□□□ -0.58
TOM1L1-222	ENST00000575909	PER1	O15534	1290 aa	Predicted RBP	11.44	□□□□□ -0.58
TOM1L1-222	ENST00000575909	TRIM26	Q12899	539 aa	Predicted RBP	11.44	□□□□□ -0.58
TOM1L1-222	ENST00000575909	NR6A1	Q15406	480 aa		11.44	□□□□□ -0.58
TOM1L1-222	ENST00000575909	PNMA1	Q8ND90	353 aa		11.44	□□□□□ -0.58
TOM1L1-222	ENST00000575909	EPS8L1	Q8TE68	723 aa		11.44	□□□□□ -0.58
TOM1L1-222	ENST00000575909	PODXL2	Q9NZ53	605 aa		11.44	□□□□□ -0.58
TOM1L1-222	ENST00000575909	LYPD8	Q6UX82	237 aa		11.43	□□□□□ -0.58
TOM1L1-222	ENST00000575909	TSR3	Q9UJK0	312 aa	Known RBP	11.43	□□□□□ -0.58
TOM1L1-222	ENST00000575909	HPS5	Q9UPZ3	1129 aa		11.43	□□□□□ -0.58
TOM1L1-222	ENST00000575909	VAC14	Q08AM6	782 aa		11.42	□□□□□ -0.58
TOM1L1-222	ENST00000575909	BRICD5	Q6PL45	260 aa		11.42	□□□□□ -0.58
TOM1L1-222	ENST00000575909	USB1	Q9BQ65	265 aa	Known RBP	11.42	□□□□□ -0.58
TOM1L1-222	ENST00000575909	SOX11	P35716	441 aa		11.41	□□□□□ -0.58
TOM1L1-222	ENST00000575909	ANKRD13D	Q6ZTN6	518 aa		11.41	□□□□□ -0.58
TOM1L1-222	ENST00000575909	ADAMTS19	Q8TE59	1207 aa		11.41	□□□□□ -0.58
TOM1L1-222	ENST00000575909	NR1I2	O75469	434 aa		11.4	□□□□□ -0.58
TOM1L1-222	ENST00000575909	APLP1	P51693	650 aa		11.4	□□□□□ -0.58
TOM1L1-222	ENST00000575909	BLOC1S3	Q6QNY0	202 aa		11.4	□□□□□ -0.58
TOM1L1-222	ENST00000575909	RNF19B	Q6ZMZ0	732 aa		11.4	□□□□□ -0.58
TOM1L1-222	ENST00000575909	TRAIP	Q9BWF2	469 aa		11.4	□□□□□ -0.58
TOM1L1-222	ENST00000575909	ALG2	Q9H553	416 aa		11.4	□□□□□ -0.58
TOM1L1-222	ENST00000575909	PCDHB3	Q9Y5E6	796 aa		11.4	□□□□□ -0.58
TOM1L1-222	ENST00000575909	ACIN1	Q9UKV3	1341 aa	Known RBP	11.39	□□□□□ -0.59
TOM1L1-222	ENST00000575909	FMNL1	O95466	1100 aa	Predicted RBP	11.39	□□□□□ -0.59
TOM1L1-222	ENST00000575909	BCAM	P50895	628 aa		11.39	□□□□□ -0.59
TOM1L1-222	ENST00000575909	SCUBE3	Q8IX30	993 aa		11.39	□□□□□ -0.59
TOM1L1-222	ENST00000575909	WNT2B	Q93097	391 aa		11.39	□□□□□ -0.59
TOM1L1-222	ENST00000575909	THAP11	Q96EK4	314 aa		11.37	□□□□□ -0.59
TOM1L1-222	ENST00000575909	LCE2D	Q5TA82	110 aa	Predicted RBP	11.36	□□□□□ -0.59
TOM1L1-222	ENST00000575909	ZBTB7C	A1YPR0	619 aa		11.35	□□□□□ -0.59
TOM1L1-222	ENST00000575909	JUND	P17535	347 aa		11.34	□□□□□ -0.59
TOM1L1-222	ENST00000575909	EIF4G2	P78344	907 aa	Known RBP eCLIP	11.34	□□□□□ -0.59
TOM1L1-222	ENST00000575909	SEMA3F	Q13275	785 aa		11.34	□□□□□ -0.59
TOM1L1-222	ENST00000575909	RETREG2	Q8NC44	543 aa		11.34	□□□□□ -0.59
TOM1L1-222	ENST00000575909	PBXIP1	Q96AQ6	731 aa		11.34	□□□□□ -0.59
TOM1L1-222	ENST00000575909	PPP1R12C	Q9BZL4	782 aa		11.34	□□□□□ -0.59
TOM1L1-222	ENST00000575909	PDE4C	Q08493	712 aa		11.33	□□□□□ -0.6
TOM1L1-222	ENST00000575909	PTPRN	Q16849	979 aa		11.33	□□□□□ -0.6
TOM1L1-222	ENST00000575909	CFAP70	Q5T0N1	1121 aa		11.33	□□□□□ -0.6
TOM1L1-222	ENST00000575909	F12	P00748	615 aa	Predicted RBP	11.32	□□□□□ -0.6
TOM1L1-222	ENST00000575909	KCTD17	Q8N5Z5	321 aa		11.32	□□□□□ -0.6
TOM1L1-222	ENST00000575909	FKBPL	Q9UIM3	349 aa		11.32	□□□□□ -0.6
TOM1L1-222	ENST00000575909	NR1H3	Q13133	447 aa		11.31	□□□□□ -0.6
TOM1L1-222	ENST00000575909	WBP1L	Q9NX94	342 aa		11.31	□□□□□ -0.6
TOM1L1-222	ENST00000575909	ZC3H4	Q9UPT8	1303 aa	Known RBP	11.31	□□□□□ -0.6
TOM1L1-222	ENST00000575909	PALM3	A6NDB9	673 aa	Predicted RBP	11.3	□□□□□ -0.6
TOM1L1-222	ENST00000575909	MSS51	Q4VC12	460 aa		11.3	□□□□□ -0.6
TOM1L1-222	ENST00000575909	ZBBX	A8MT70	800 aa		11.29	□□□□□ -0.6
TOM1L1-222	ENST00000575909	RFX1	P22670	979 aa		11.29	□□□□□ -0.6
TOM1L1-222	ENST00000575909	SPSB2	Q99619	263 aa		11.28	□□□□□ -0.6
TOM1L1-222	ENST00000575909	SRPK2	P78362	688 aa	Known RBP	11.27	□□□□□ -0.61
TOM1L1-222	ENST00000575909	NYAP1	Q6ZVC0	841 aa		11.27	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms