RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 USP47Q96K76 1375 aa11.07□□□□□ -0.64
VPS39-213ENST00000570062 PYGBP11216 843 aa11.07□□□□□ -0.64
VPS39-213ENST00000570062 MYOM2P54296 1465 aa11.06□□□□□ -0.64
VPS39-213ENST00000570062 CDCA8Q53HL2 280 aa11.06□□□□□ -0.64
VPS39-213ENST00000570062 ANP32CO43423 234 aa11.05□□□□□ -0.64
VPS39-213ENST00000570062 DDX10Q13206 875 aaKnown RBP11.05□□□□□ -0.64
VPS39-213ENST00000570062 EIF3AQ14152 1382 aaKnown RBP11.04□□□□□ -0.64
VPS39-213ENST00000570062 CHGAP10645 457 aaKnown RBP11.04□□□□□ -0.64
VPS39-213ENST00000570062 KLHL34Q8N239 644 aa11.04□□□□□ -0.64
VPS39-213ENST00000570062 CAMSAP1Q5T5Y3 1602 aa11.04□□□□□ -0.64
VPS39-213ENST00000570062 ZFYVE9O95405 1425 aa11.03□□□□□ -0.64
VPS39-213ENST00000570062 CLTCL1P53675 1640 aa11.03□□□□□ -0.64
VPS39-213ENST00000570062 IDI1Q13907 227 aa11.03□□□□□ -0.64
VPS39-213ENST00000570062 LCE2DQ5TA82 110 aaPredicted RBP11.03□□□□□ -0.64
VPS39-213ENST00000570062 PCDH10Q9P2E7 1040 aa11.03□□□□□ -0.64
VPS39-213ENST00000570062 CEP152O94986 1710 aa11.03□□□□□ -0.64
VPS39-213ENST00000570062 LAMC1P11047 1609 aa11.02□□□□□ -0.64
VPS39-213ENST00000570062 PLCG2P16885 1265 aa11.02□□□□□ -0.65
VPS39-213ENST00000570062 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.02□□□□□ -0.65
VPS39-213ENST00000570062 ZMYM3Q14202 1370 aa11.02□□□□□ -0.65
VPS39-213ENST00000570062 CCDC7Q96M83 1385 aa11.02□□□□□ -0.65
VPS39-213ENST00000570062 ADGRB3O60242 1522 aa11.01□□□□□ -0.65
VPS39-213ENST00000570062 CCER2I3L3R5 266 aa11.01□□□□□ -0.65
VPS39-213ENST00000570062 VASPP50552 380 aaPredicted RBP11.01□□□□□ -0.65
VPS39-213ENST00000570062 TMF1P82094 1093 aa11.01□□□□□ -0.65
VPS39-213ENST00000570062 WASHC2AQ641Q2 1341 aa11.01□□□□□ -0.65
VPS39-213ENST00000570062 ERVK-7P63135 1459 aa11□□□□□ -0.65
VPS39-213ENST00000570062 ST20-MTHFSA0A0A6YYL1 179 aa11□□□□□ -0.65
VPS39-213ENST00000570062 HIRIP3Q9BW71 556 aaPredicted RBP11□□□□□ -0.65
VPS39-213ENST00000570062 C14orf93Q9H972 538 aaKnown RBP11□□□□□ -0.65
VPS39-213ENST00000570062 PCDHB8Q9UN66 801 aa11□□□□□ -0.65
VPS39-213ENST00000570062 NRXN1Q9ULB1 1477 aa11□□□□□ -0.65
VPS39-213ENST00000570062 MLECQ14165 292 aa10.99□□□□□ -0.65
VPS39-213ENST00000570062 KIF1BO60333 1816 aa10.99□□□□□ -0.65
VPS39-213ENST00000570062 SCAF11Q99590 1463 aaKnown RBP10.99□□□□□ -0.65
VPS39-213ENST00000570062 IRX5P78411 483 aaPredicted RBP10.98□□□□□ -0.65
VPS39-213ENST00000570062 GSE1Q14687 1217 aa10.98□□□□□ -0.65
VPS39-213ENST00000570062 NBPF1Q3BBV0 1214 aa10.98□□□□□ -0.65
VPS39-213ENST00000570062 PIK3C2BO00750 1634 aa10.98□□□□□ -0.65
VPS39-213ENST00000570062 TRPM1Q7Z4N2 1603 aa10.98□□□□□ -0.65
VPS39-213ENST00000570062 KIAA1210Q9ULL0 1709 aa10.98□□□□□ -0.65
VPS39-213ENST00000570062 CENPBP07199 599 aaPredicted RBP10.97□□□□□ -0.65
VPS39-213ENST00000570062 KIF7Q2M1P5 1343 aa10.97□□□□□ -0.65
VPS39-213ENST00000570062 ADGRF5Q8IZF2 1346 aa10.96□□□□□ -0.65
VPS39-213ENST00000570062 FBXO31Q5XUX0 539 aaPredicted RBP10.96□□□□□ -0.65
VPS39-213ENST00000570062 SLAIN1Q8ND83 568 aa10.96□□□□□ -0.65
VPS39-213ENST00000570062 PUS7Q96PZ0 661 aaKnown RBP10.96□□□□□ -0.65
VPS39-213ENST00000570062 MADDQ8WXG6 1647 aa10.95□□□□□ -0.66
VPS39-213ENST00000570062 PIK3C2GO75747 1445 aa10.95□□□□□ -0.66
VPS39-213ENST00000570062 KTN1Q86UP2 1357 aaKnown RBP10.95□□□□□ -0.66
VPS39-213ENST00000570062 TNRQ92752 1358 aa10.95□□□□□ -0.66
VPS39-213ENST00000570062 CERKQ8TCT0 537 aa10.95□□□□□ -0.66
VPS39-213ENST00000570062 OCEL1Q9H607 264 aa10.95□□□□□ -0.66
VPS39-213ENST00000570062 SYNMO15061 1565 aa10.94□□□□□ -0.66
VPS39-213ENST00000570062 SETBP1Q9Y6X0 1596 aa10.94□□□□□ -0.66
VPS39-213ENST00000570062 NLRP1Q9C000 1473 aa10.94□□□□□ -0.66
VPS39-213ENST00000570062 SBNO2Q9Y2G9 1366 aa10.94□□□□□ -0.66
VPS39-213ENST00000570062 CFAP70Q5T0N1 1121 aa10.94□□□□□ -0.66
VPS39-213ENST00000570062 PREX1Q8TCU6 1659 aa10.94□□□□□ -0.66
VPS39-213ENST00000570062 UGGT1Q9NYU2 1555 aa10.94□□□□□ -0.66
VPS39-213ENST00000570062 TESK2Q96S53 571 aa10.93□□□□□ -0.66
VPS39-213ENST00000570062 MROH2AA6NES4 1674 aa10.92□□□□□ -0.66
VPS39-213ENST00000570062 C11orf95C9JLR9 678 aaPredicted RBP10.92□□□□□ -0.66
VPS39-213ENST00000570062 ZNF467Q7Z7K2 595 aaPredicted RBP10.92□□□□□ -0.66
VPS39-213ENST00000570062 THEMISQ8N1K5 641 aaPredicted RBP10.91□□□□□ -0.66
VPS39-213ENST00000570062 CLTCQ00610 1675 aaKnown RBP10.91□□□□□ -0.66
VPS39-213ENST00000570062 CENPJQ9HC77 1338 aaPredicted RBP10.9□□□□□ -0.66
VPS39-213ENST00000570062 A2ML1A8K2U0 1454 aa10.9□□□□□ -0.66
VPS39-213ENST00000570062 SIRT1Q96EB6 747 aa10.9□□□□□ -0.66
VPS39-213ENST00000570062 EID1Q9Y6B2 187 aa10.9□□□□□ -0.66
VPS39-213ENST00000570062 TMEM131LA2VDJ0 1609 aa10.9□□□□□ -0.66
VPS39-213ENST00000570062 NEXMIFQ5QGS0 1516 aa10.89□□□□□ -0.67
VPS39-213ENST00000570062 RALBP1Q15311 655 aa10.89□□□□□ -0.67
VPS39-213ENST00000570062 KDM5AP29375 1690 aaKnown RBP10.89□□□□□ -0.67
VPS39-213ENST00000570062 CHRM1P11229 460 aaPredicted RBP10.88□□□□□ -0.67
VPS39-213ENST00000570062 POLR3GLQ9BT43 218 aa10.88□□□□□ -0.67
VPS39-213ENST00000570062 SIGLEC1Q9BZZ2 1709 aa10.88□□□□□ -0.67
VPS39-213ENST00000570062 IFT172Q9UG01 1749 aa10.88□□□□□ -0.67
VPS39-213ENST00000570062 RIMS2Q9UQ26 1411 aa10.88□□□□□ -0.67
VPS39-213ENST00000570062 PRKRIP1Q9H875 184 aaPredicted RBP10.87□□□□□ -0.67
VPS39-213ENST00000570062 PPLO60437 1756 aa10.87□□□□□ -0.67
VPS39-213ENST00000570062 TMEM2Q9UHN6 1383 aa10.87□□□□□ -0.67
VPS39-213ENST00000570062 PTPRMP28827 1452 aa10.87□□□□□ -0.67
VPS39-213ENST00000570062 POLR1AO95602 1720 aaPredicted RBP10.87□□□□□ -0.67
VPS39-213ENST00000570062 EVC2Q86UK5 1308 aa10.86□□□□□ -0.67
VPS39-213ENST00000570062 GOLGA2Q08379 1002 aa10.86□□□□□ -0.67
VPS39-213ENST00000570062 TRAK1Q9UPV9 953 aa10.85□□□□□ -0.67
VPS39-213ENST00000570062 IQGAP1P46940 1657 aa10.85□□□□□ -0.67
VPS39-213ENST00000570062 ST18O60284 1047 aa10.84□□□□□ -0.67
VPS39-213ENST00000570062 MKRN3Q13064 507 aaKnown RBP10.84□□□□□ -0.67
VPS39-213ENST00000570062 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.84□□□□□ -0.67
VPS39-213ENST00000570062 ABCC11Q96J66 1382 aa10.84□□□□□ -0.67
VPS39-213ENST00000570062 NINLQ9Y2I6 1382 aa10.84□□□□□ -0.67
VPS39-213ENST00000570062 ADGRB1O14514 1584 aa10.84□□□□□ -0.67
VPS39-213ENST00000570062 LRPPRCP42704 1394 aaKnown RBP10.83□□□□□ -0.68
VPS39-213ENST00000570062 POGKQ9P215 609 aa10.83□□□□□ -0.68
VPS39-213ENST00000570062 KNSTRNQ9Y448 316 aa10.83□□□□□ -0.68
VPS39-213ENST00000570062 NPC1L1Q9UHC9 1359 aa10.82□□□□□ -0.68
VPS39-213ENST00000570062 PLEKHG1Q9ULL1 1385 aa10.82□□□□□ -0.68
VPS39-213ENST00000570062 PSEN1P49768 467 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms