RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 FDX1P10109 184 aa10.44□□□□□ -0.74
LRRC28-220ENST00000561253 BCAMP50895 628 aa10.44□□□□□ -0.74
LRRC28-220ENST00000561253 FLIIQ13045 1269 aa10.44□□□□□ -0.74
LRRC28-220ENST00000561253 CDAN1Q8IWY9 1227 aa10.44□□□□□ -0.74
LRRC28-220ENST00000561253 PRR14Q9BWN1 585 aa10.44□□□□□ -0.74
LRRC28-220ENST00000561253 HPS5Q9UPZ3 1129 aa10.44□□□□□ -0.74
LRRC28-220ENST00000561253 FANCD2Q9BXW9 1451 aa10.43□□□□□ -0.74
LRRC28-220ENST00000561253 ATP6V1AP38606 617 aa10.42□□□□□ -0.74
LRRC28-220ENST00000561253 TSR3Q9UJK0 312 aaKnown RBP10.42□□□□□ -0.74
LRRC28-220ENST00000561253 PCDHB15Q9Y5E8 787 aa10.42□□□□□ -0.74
LRRC28-220ENST00000561253 NUTM2BA6NNL0 878 aaPredicted RBP10.41□□□□□ -0.74
LRRC28-220ENST00000561253 NUTM2EB1AL46 878 aaPredicted RBP10.41□□□□□ -0.74
LRRC28-220ENST00000561253 ACTN4O43707 911 aaKnown RBP10.41□□□□□ -0.74
LRRC28-220ENST00000561253 RFC5P40937 340 aa10.41□□□□□ -0.74
LRRC28-220ENST00000561253 GUCA2AQ02747 115 aa10.41□□□□□ -0.74
LRRC28-220ENST00000561253 NUTM2DQ5VT03 806 aaPredicted RBP10.41□□□□□ -0.74
LRRC28-220ENST00000561253 PPP2R2DQ66LE6 453 aa10.41□□□□□ -0.74
LRRC28-220ENST00000561253 NUTM2AQ8IVF1 878 aaPredicted RBP10.41□□□□□ -0.74
LRRC28-220ENST00000561253 HLA-CQ95604 372 aa10.41□□□□□ -0.74
LRRC28-220ENST00000561253 QPCTQ16769 361 aa10.4□□□□□ -0.74
LRRC28-220ENST00000561253 PRPF38BQ5VTL8 546 aaKnown RBP10.4□□□□□ -0.74
LRRC28-220ENST00000561253 ZBTB3Q9H5J0 574 aa10.4□□□□□ -0.74
LRRC28-220ENST00000561253 ERCC6Q03468 1493 aa10.4□□□□□ -0.74
LRRC28-220ENST00000561253 KIF21AQ7Z4S6 1674 aa10.4□□□□□ -0.74
LRRC28-220ENST00000561253 THOC2Q8NI27 1593 aaKnown RBP10.39□□□□□ -0.75
LRRC28-220ENST00000561253 LILRB3O75022 631 aa10.39□□□□□ -0.75
LRRC28-220ENST00000561253 CEP164Q9UPV0 1460 aa10.38□□□□□ -0.75
LRRC28-220ENST00000561253 TMEM259Q4ZIN3 620 aa10.38□□□□□ -0.75
LRRC28-220ENST00000561253 FBXO31Q5XUX0 539 aaPredicted RBP10.38□□□□□ -0.75
LRRC28-220ENST00000561253 CABLES1Q8TDN4 633 aa10.38□□□□□ -0.75
LRRC28-220ENST00000561253 KCTD12Q96CX2 325 aaKnown RBP10.38□□□□□ -0.75
LRRC28-220ENST00000561253 PCDHGC3Q9UN70 934 aa10.38□□□□□ -0.75
LRRC28-220ENST00000561253 HRCP23327 699 aa10.37□□□□□ -0.75
LRRC28-220ENST00000561253 PRDM2Q13029 1718 aa10.37□□□□□ -0.75
LRRC28-220ENST00000561253 MTMR2Q13614 643 aa10.37□□□□□ -0.75
LRRC28-220ENST00000561253 PUS10Q3MIT2 529 aaKnown RBP10.37□□□□□ -0.75
LRRC28-220ENST00000561253 MRC2Q9UBG0 1479 aa10.36□□□□□ -0.75
LRRC28-220ENST00000561253 C6orf229H3BNL8 230 aa10.36□□□□□ -0.75
LRRC28-220ENST00000561253 RTL5Q5HYW3 569 aaPredicted RBP10.36□□□□□ -0.75
LRRC28-220ENST00000561253 THSD4Q6ZMP0 1018 aa10.36□□□□□ -0.75
LRRC28-220ENST00000561253 URB2Q14146 1524 aaKnown RBP10.35□□□□□ -0.75
LRRC28-220ENST00000561253 APLP1P51693 650 aa10.35□□□□□ -0.75
LRRC28-220ENST00000561253 MORN1Q5T089 497 aa10.35□□□□□ -0.75
LRRC28-220ENST00000561253 BANK1Q8NDB2 785 aa10.35□□□□□ -0.75
LRRC28-220ENST00000561253 WBP1LQ9NX94 342 aa10.35□□□□□ -0.75
LRRC28-220ENST00000561253 WDR62O43379 1518 aa10.34□□□□□ -0.75
LRRC28-220ENST00000561253 SPDYE5A6NIY4 337 aa10.34□□□□□ -0.75
LRRC28-220ENST00000561253 MCM6Q14566 821 aa10.34□□□□□ -0.75
LRRC28-220ENST00000561253 PCDHB3Q9Y5E6 796 aa10.34□□□□□ -0.75
LRRC28-220ENST00000561253 AP1G2O75843 785 aa10.33□□□□□ -0.76
LRRC28-220ENST00000561253 Q3C1V9 767 aa10.33□□□□□ -0.76
LRRC28-220ENST00000561253 ZMYND15Q9H091 742 aa10.33□□□□□ -0.76
LRRC28-220ENST00000561253 SLC27A5Q9Y2P5 690 aa10.33□□□□□ -0.76
LRRC28-220ENST00000561253 CUX2O14529 1486 aa10.31□□□□□ -0.76
LRRC28-220ENST00000561253 UBTFP17480 764 aaKnown RBP10.31□□□□□ -0.76
LRRC28-220ENST00000561253 NR1I2O75469 434 aa10.3□□□□□ -0.76
LRRC28-220ENST00000561253 NYAP1Q6ZVC0 841 aa10.3□□□□□ -0.76
LRRC28-220ENST00000561253 TSC1Q92574 1164 aa10.3□□□□□ -0.76
LRRC28-220ENST00000561253 SYMPKQ92797 1274 aaKnown RBP10.3□□□□□ -0.76
LRRC28-220ENST00000561253 TOPBP1Q92547 1522 aa10.29□□□□□ -0.76
LRRC28-220ENST00000561253 PTPN5P54829 565 aa10.29□□□□□ -0.76
LRRC28-220ENST00000561253 HELBQ8NG08 1087 aaPredicted RBP10.29□□□□□ -0.76
LRRC28-220ENST00000561253 SNRKQ9NRH2 765 aa10.29□□□□□ -0.76
LRRC28-220ENST00000561253 CUX1P39880 1505 aa10.28□□□□□ -0.76
LRRC28-220ENST00000561253 BLOC1S3Q6QNY0 202 aa10.28□□□□□ -0.76
LRRC28-220ENST00000561253 RETREG3Q86VR2 466 aa10.28□□□□□ -0.76
LRRC28-220ENST00000561253 MYT1LQ9UL68 1186 aa10.28□□□□□ -0.76
LRRC28-220ENST00000561253 DNMBPQ6XZF7 1577 aa10.27□□□□□ -0.76
LRRC28-220ENST00000561253 CFAP99D6REC4 459 aa10.27□□□□□ -0.77
LRRC28-220ENST00000561253 SCUBE3Q8IX30 993 aa10.27□□□□□ -0.77
LRRC28-220ENST00000561253 PRR7Q8TB68 274 aa10.27□□□□□ -0.77
LRRC28-220ENST00000561253 RAD21O60216 631 aa10.26□□□□□ -0.77
LRRC28-220ENST00000561253 FMNL1O95466 1100 aaPredicted RBP10.26□□□□□ -0.77
LRRC28-220ENST00000561253 USP17L8P0C7I0 530 aa10.26□□□□□ -0.77
LRRC28-220ENST00000561253 SALL2Q9Y467 1007 aaPredicted RBP10.26□□□□□ -0.77
LRRC28-220ENST00000561253 ABCC8Q09428 1581 aa10.26□□□□□ -0.77
LRRC28-220ENST00000561253 APBB1O00213 710 aa10.25□□□□□ -0.77
LRRC28-220ENST00000561253 COPS2P61201 443 aa10.25□□□□□ -0.77
LRRC28-220ENST00000561253 BRICD5Q6PL45 260 aa10.25□□□□□ -0.77
LRRC28-220ENST00000561253 RNF19BQ6ZMZ0 732 aa10.25□□□□□ -0.77
LRRC28-220ENST00000561253 CLUAP1Q96AJ1 413 aa10.25□□□□□ -0.77
LRRC28-220ENST00000561253 CTDSPL2Q05D32 466 aa10.24□□□□□ -0.77
LRRC28-220ENST00000561253 MTMR14Q8NCE2 650 aa10.24□□□□□ -0.77
LRRC28-220ENST00000561253 USB1Q9BQ65 265 aaKnown RBP10.24□□□□□ -0.77
LRRC28-220ENST00000561253 WRNQ14191 1432 aaPredicted RBP eCLIP10.24□□□□□ -0.77
LRRC28-220ENST00000561253 PRM3Q9NNZ6 103 aa10.23□□□□□ -0.77
LRRC28-220ENST00000561253 PCDH10Q9P2E7 1040 aa10.23□□□□□ -0.77
LRRC28-220ENST00000561253 POLA1P09884 1462 aaPredicted RBP10.23□□□□□ -0.77
LRRC28-220ENST00000561253 SOCS7O14512 581 aa10.22□□□□□ -0.77
LRRC28-220ENST00000561253 SYNJ1O43426 1573 aa10.22□□□□□ -0.77
LRRC28-220ENST00000561253 A6NJR5 290 aa10.21□□□□□ -0.77
LRRC28-220ENST00000561253 THAP11Q96EK4 314 aa10.21□□□□□ -0.77
LRRC28-220ENST00000561253 TOP2BQ02880 1626 aa10.2□□□□□ -0.78
LRRC28-220ENST00000561253 DESI1Q6ICB0 168 aa10.2□□□□□ -0.78
LRRC28-220ENST00000561253 FGD5Q6ZNL6 1462 aa10.2□□□□□ -0.78
LRRC28-220ENST00000561253 POM121Q96HA1 1249 aa10.2□□□□□ -0.78
LRRC28-220ENST00000561253 LRRN4Q8WUT4 740 aa10.19□□□□□ -0.78
LRRC28-220ENST00000561253 SPSB2Q99619 263 aa10.19□□□□□ -0.78
LRRC28-220ENST00000561253 MTRQ99707 1265 aa10.19□□□□□ -0.78
LRRC28-220ENST00000561253 COG6Q9Y2V7 657 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms