RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 PREX1Q8TCU6 1659 aa13.05□□□□□ -0.32
RTF1-206ENST00000560447 ERVK-7P63135 1459 aa13.04□□□□□ -0.32
RTF1-206ENST00000560447 ADGRB1O14514 1584 aa13.04□□□□□ -0.32
RTF1-206ENST00000560447 USP32Q8NFA0 1604 aa13.04□□□□□ -0.32
RTF1-206ENST00000560447 PUS7Q96PZ0 661 aaKnown RBP13.04□□□□□ -0.32
RTF1-206ENST00000560447 PPP4R2Q9NY27 417 aa13.04□□□□□ -0.32
RTF1-206ENST00000560447 NEXMIFQ5QGS0 1516 aa13.03□□□□□ -0.32
RTF1-206ENST00000560447 QRICH2Q9H0J4 1663 aa13.03□□□□□ -0.32
RTF1-206ENST00000560447 C14orf93Q9H972 538 aaKnown RBP13.02□□□□□ -0.33
RTF1-206ENST00000560447 KNSTRNQ9Y448 316 aa13.02□□□□□ -0.33
RTF1-206ENST00000560447 CFAP65Q6ZU64 1925 aaKnown RBP13.01□□□□□ -0.33
RTF1-206ENST00000560447 SLC52A1Q9NWF4 448 aa13.01□□□□□ -0.33
RTF1-206ENST00000560447 ADGRF5Q8IZF2 1346 aa13.01□□□□□ -0.33
RTF1-206ENST00000560447 ARHGEF28Q8N1W1 1705 aaKnown RBP13□□□□□ -0.33
RTF1-206ENST00000560447 TSHZ2Q9NRE2 1034 aa13□□□□□ -0.33
RTF1-206ENST00000560447 CFAP70Q5T0N1 1121 aa12.99□□□□□ -0.33
RTF1-206ENST00000560447 GGT6Q6P531 493 aa12.99□□□□□ -0.33
RTF1-206ENST00000560447 TMEM131LA2VDJ0 1609 aa12.99□□□□□ -0.33
RTF1-206ENST00000560447 CENPJQ9HC77 1338 aaPredicted RBP12.98□□□□□ -0.33
RTF1-206ENST00000560447 VGFO15240 615 aaPredicted RBP12.98□□□□□ -0.33
RTF1-206ENST00000560447 AMER1Q5JTC6 1135 aaPredicted RBP12.98□□□□□ -0.33
RTF1-206ENST00000560447 BCANQ96GW7 911 aa12.98□□□□□ -0.33
RTF1-206ENST00000560447 CREBZFQ9NS37 354 aa12.98□□□□□ -0.33
RTF1-206ENST00000560447 FARP1Q9Y4F1 1045 aaPredicted RBP12.98□□□□□ -0.33
RTF1-206ENST00000560447 YEATS2Q9ULM3 1422 aa12.96□□□□□ -0.33
RTF1-206ENST00000560447 RAPGEF3O95398 923 aa12.96□□□□□ -0.33
RTF1-206ENST00000560447 NGEFQ8N5V2 710 aa12.96□□□□□ -0.33
RTF1-206ENST00000560447 MYO5BQ9ULV0 1848 aa12.95□□□□□ -0.34
RTF1-206ENST00000560447 NINLQ9Y2I6 1382 aa12.94□□□□□ -0.34
RTF1-206ENST00000560447 ARHGEF40Q8TER5 1519 aa12.94□□□□□ -0.34
RTF1-206ENST00000560447 PPP2R1AP30153 589 aa12.94□□□□□ -0.34
RTF1-206ENST00000560447 CC2D1BQ5T0F9 858 aaKnown RBP12.94□□□□□ -0.34
RTF1-206ENST00000560447 CLTCQ00610 1675 aaKnown RBP12.93□□□□□ -0.34
RTF1-206ENST00000560447 SPATA31D1Q6ZQQ2 1576 aa12.93□□□□□ -0.34
RTF1-206ENST00000560447 KIF13AQ9H1H9 1805 aa12.92□□□□□ -0.34
RTF1-206ENST00000560447 NSD2O96028 1365 aa12.92□□□□□ -0.34
RTF1-206ENST00000560447 TSPOAP1O95153 1857 aa12.91□□□□□ -0.34
RTF1-206ENST00000560447 CHGAP10645 457 aaKnown RBP12.91□□□□□ -0.34
RTF1-206ENST00000560447 CYB5RLQ6IPT4 315 aa12.91□□□□□ -0.34
RTF1-206ENST00000560447 FAM69CQ0P6D2 419 aa12.9□□□□□ -0.34
RTF1-206ENST00000560447 CNGB1Q14028 1251 aaPredicted RBP12.9□□□□□ -0.34
RTF1-206ENST00000560447 WDR43Q15061 677 aaKnown RBP eCLIP12.9□□□□□ -0.34
RTF1-206ENST00000560447 POLR3AO14802 1390 aaPredicted RBP12.89□□□□□ -0.35
RTF1-206ENST00000560447 EVC2Q86UK5 1308 aa12.88□□□□□ -0.35
RTF1-206ENST00000560447 DLC1Q96QB1 1528 aa12.88□□□□□ -0.35
RTF1-206ENST00000560447 ANKRD26Q9UPS8 1709 aa12.88□□□□□ -0.35
RTF1-206ENST00000560447 IDI1Q13907 227 aa12.88□□□□□ -0.35
RTF1-206ENST00000560447 TULP4Q9NRJ4 1543 aa12.88□□□□□ -0.35
RTF1-206ENST00000560447 MYT1Q01538 1121 aa12.87□□□□□ -0.35
RTF1-206ENST00000560447 RCAN3Q9UKA8 241 aa12.86□□□□□ -0.35
RTF1-206ENST00000560447 ANKRD36BQ8N2N9 1353 aa12.85□□□□□ -0.35
RTF1-206ENST00000560447 RRP1P56182 461 aaKnown RBP12.85□□□□□ -0.35
RTF1-206ENST00000560447 IRX6P78412 446 aaPredicted RBP12.85□□□□□ -0.35
RTF1-206ENST00000560447 SETD1AO15047 1707 aaKnown RBP12.85□□□□□ -0.35
RTF1-206ENST00000560447 MED14O60244 1454 aa12.85□□□□□ -0.35
RTF1-206ENST00000560447 PTPRMP28827 1452 aa12.85□□□□□ -0.35
RTF1-206ENST00000560447 ALKQ9UM73 1620 aa12.84□□□□□ -0.35
RTF1-206ENST00000560447 SHPRHQ149N8 1683 aa12.84□□□□□ -0.35
RTF1-206ENST00000560447 CD44P16070 742 aaKnown RBP12.84□□□□□ -0.35
RTF1-206ENST00000560447 ADAMTS8Q9UP79 889 aa12.84□□□□□ -0.35
RTF1-206ENST00000560447 TRAK1Q9UPV9 953 aa12.84□□□□□ -0.35
RTF1-206ENST00000560447 NSD3Q9BZ95 1437 aa12.84□□□□□ -0.35
RTF1-206ENST00000560447 CGNL1Q0VF96 1302 aa12.84□□□□□ -0.35
RTF1-206ENST00000560447 ZNF521Q96K83 1311 aa12.84□□□□□ -0.35
RTF1-206ENST00000560447 ATAD2Q6PL18 1390 aa12.83□□□□□ -0.36
RTF1-206ENST00000560447 KNDC1Q76NI1 1749 aa12.83□□□□□ -0.36
RTF1-206ENST00000560447 CARD14Q9BXL6 1004 aa12.83□□□□□ -0.36
RTF1-206ENST00000560447 YTHDC2Q9H6S0 1430 aaKnown RBP12.82□□□□□ -0.36
RTF1-206ENST00000560447 GABBR2O75899 941 aa12.82□□□□□ -0.36
RTF1-206ENST00000560447 MNX1P50219 401 aaPredicted RBP12.82□□□□□ -0.36
RTF1-206ENST00000560447 A2ML1A8K2U0 1454 aa12.82□□□□□ -0.36
RTF1-206ENST00000560447 RBM19Q9Y4C8 960 aaKnown RBP12.81□□□□□ -0.36
RTF1-206ENST00000560447 GOLGA2Q08379 1002 aa12.79□□□□□ -0.36
RTF1-206ENST00000560447 TMEM132EQ6IEE7 984 aa12.79□□□□□ -0.36
RTF1-206ENST00000560447 CCDC136Q96JN2 1154 aa12.79□□□□□ -0.36
RTF1-206ENST00000560447 FANCIQ9NVI1 1328 aa12.79□□□□□ -0.36
RTF1-206ENST00000560447 ABCC11Q96J66 1382 aa12.79□□□□□ -0.36
RTF1-206ENST00000560447 KIF20BQ96Q89 1820 aa12.78□□□□□ -0.36
RTF1-206ENST00000560447 B4GALNT3Q6L9W6 998 aa12.78□□□□□ -0.36
RTF1-206ENST00000560447 TRMT2AQ8IZ69 625 aaKnown RBP12.78□□□□□ -0.36
RTF1-206ENST00000560447 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.78□□□□□ -0.36
RTF1-206ENST00000560447 PLEKHH1Q9ULM0 1364 aa12.78□□□□□ -0.36
RTF1-206ENST00000560447 MORC1Q86VD1 984 aa12.77□□□□□ -0.37
RTF1-206ENST00000560447 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.77□□□□□ -0.37
RTF1-206ENST00000560447 CFAP53Q96M91 514 aa12.77□□□□□ -0.37
RTF1-206ENST00000560447 RIMS2Q9UQ26 1411 aa12.77□□□□□ -0.37
RTF1-206ENST00000560447 HDGFP51858 240 aaKnown RBP12.76□□□□□ -0.37
RTF1-206ENST00000560447 ATP7BP35670 1465 aa12.76□□□□□ -0.37
RTF1-206ENST00000560447 NRXN3Q9Y4C0 1643 aa12.76□□□□□ -0.37
RTF1-206ENST00000560447 E9PSI1 815 aa12.75□□□□□ -0.37
RTF1-206ENST00000560447 NKTRP30414 1462 aaKnown RBP12.75□□□□□ -0.37
RTF1-206ENST00000560447 SLFN5Q08AF3 891 aa12.75□□□□□ -0.37
RTF1-206ENST00000560447 IQSEC2Q5JU85 1478 aa12.75□□□□□ -0.37
RTF1-206ENST00000560447 DUSP27Q5VZP5 1158 aa12.75□□□□□ -0.37
RTF1-206ENST00000560447 SIRT1Q96EB6 747 aa12.75□□□□□ -0.37
RTF1-206ENST00000560447 SLC12A5Q9H2X9 1139 aa12.75□□□□□ -0.37
RTF1-206ENST00000560447 TERF2IPQ9NYB0 399 aa12.75□□□□□ -0.37
RTF1-206ENST00000560447 ADGRB2O60241 1585 aa12.74□□□□□ -0.37
RTF1-206ENST00000560447 TECPR2O15040 1411 aa12.74□□□□□ -0.37
RTF1-206ENST00000560447 CDCA7LQ96GN5 454 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms