RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 PHF14O94880 888 aa8.74□□□□□ -1.01
USP3-210ENST00000559192 KIF16BQ96L93 1317 aa8.73□□□□□ -1.01
USP3-210ENST00000559192 CDC45O75419 566 aa8.73□□□□□ -1.01
USP3-210ENST00000559192 PANK2Q9BZ23 570 aa8.73□□□□□ -1.01
USP3-210ENST00000559192 PRPF40AO75400 957 aaKnown RBP8.73□□□□□ -1.01
USP3-210ENST00000559192 SEC24BO95487 1268 aa8.73□□□□□ -1.01
USP3-210ENST00000559192 PARD3Q8TEW0 1356 aa8.73□□□□□ -1.01
USP3-210ENST00000559192 HMMRO75330 724 aa8.73□□□□□ -1.01
USP3-210ENST00000559192 SLC12A5Q9H2X9 1139 aa8.73□□□□□ -1.01
USP3-210ENST00000559192 TEX14Q8IWB6 1497 aa8.72□□□□□ -1.01
USP3-210ENST00000559192 RARSP54136 660 aaKnown RBP8.72□□□□□ -1.01
USP3-210ENST00000559192 NOC3LQ8WTT2 800 aaKnown RBP8.72□□□□□ -1.01
USP3-210ENST00000559192 PLB1Q6P1J6 1458 aa8.72□□□□□ -1.01
USP3-210ENST00000559192 NUCB2P80303 420 aa8.72□□□□□ -1.01
USP3-210ENST00000559192 MPNDQ8N594 471 aa8.72□□□□□ -1.01
USP3-210ENST00000559192 KDM6BO15054 1643 aa8.72□□□□□ -1.01
USP3-210ENST00000559192 BCL11BQ9C0K0 894 aaPredicted RBP8.72□□□□□ -1.01
USP3-210ENST00000559192 K7ELQ4 463 aaPredicted RBP8.71□□□□□ -1.01
USP3-210ENST00000559192 INTS3Q68E01 1043 aaKnown RBP8.71□□□□□ -1.01
USP3-210ENST00000559192 RRP9O43818 475 aaKnown RBP8.71□□□□□ -1.01
USP3-210ENST00000559192 CSPP1Q1MSJ5 1256 aa8.71□□□□□ -1.02
USP3-210ENST00000559192 PLEKHH1Q9ULM0 1364 aa8.71□□□□□ -1.02
USP3-210ENST00000559192 XRCC6P12956 609 aaKnown RBP eCLIP8.71□□□□□ -1.02
USP3-210ENST00000559192 HAP1P54257 671 aaPredicted RBP8.7□□□□□ -1.02
USP3-210ENST00000559192 MLECQ14165 292 aa8.7□□□□□ -1.02
USP3-210ENST00000559192 CHD1LQ86WJ1 897 aa8.7□□□□□ -1.02
USP3-210ENST00000559192 WDR63Q8IWG1 891 aa8.7□□□□□ -1.02
USP3-210ENST00000559192 TBC1D32Q96NH3 1257 aa8.7□□□□□ -1.02
USP3-210ENST00000559192 CHMP3Q9Y3E7 222 aa8.7□□□□□ -1.02
USP3-210ENST00000559192 REC8O95072 547 aa8.7□□□□□ -1.02
USP3-210ENST00000559192 LMOD3Q0VAK6 560 aa8.7□□□□□ -1.02
USP3-210ENST00000559192 TMEM57Q8N5G2 664 aa8.7□□□□□ -1.02
USP3-210ENST00000559192 TNPO1Q92973 898 aaKnown RBP8.7□□□□□ -1.02
USP3-210ENST00000559192 STK31Q9BXU1 1019 aa8.7□□□□□ -1.02
USP3-210ENST00000559192 CCDC39Q9UFE4 941 aa8.7□□□□□ -1.02
USP3-210ENST00000559192 TNNQ9UQP3 1299 aa8.7□□□□□ -1.02
USP3-210ENST00000559192 URB2Q14146 1524 aaKnown RBP8.7□□□□□ -1.02
USP3-210ENST00000559192 ATF7IPQ6VMQ6 1270 aa8.7□□□□□ -1.02
USP3-210ENST00000559192 KIF14Q15058 1648 aa8.7□□□□□ -1.02
USP3-210ENST00000559192 KDM2BQ8NHM5 1336 aa8.69□□□□□ -1.02
USP3-210ENST00000559192 RRAGDQ9NQL2 400 aaPredicted RBP8.69□□□□□ -1.02
USP3-210ENST00000559192 NSD3Q9BZ95 1437 aa8.69□□□□□ -1.02
USP3-210ENST00000559192 NECTIN2Q92692 538 aa8.69□□□□□ -1.02
USP3-210ENST00000559192 SCAPERQ9BY12 1400 aa8.69□□□□□ -1.02
USP3-210ENST00000559192 UQCRHLA0A096LP55 91 aa8.69□□□□□ -1.02
USP3-210ENST00000559192 UQCRHP07919 91 aa8.69□□□□□ -1.02
USP3-210ENST00000559192 AFAP1Q8N556 730 aa8.69□□□□□ -1.02
USP3-210ENST00000559192 ANO2Q9NQ90 1003 aa8.69□□□□□ -1.02
USP3-210ENST00000559192 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.69□□□□□ -1.02
USP3-210ENST00000559192 GCC2Q8IWJ2 1684 aa8.68□□□□□ -1.02
USP3-210ENST00000559192 PZPP20742 1482 aa8.68□□□□□ -1.02
USP3-210ENST00000559192 SYNJ2O15056 1496 aa8.68□□□□□ -1.02
USP3-210ENST00000559192 NUTM2FA1L443 756 aa8.68□□□□□ -1.02
USP3-210ENST00000559192 SSFA2P28290 1259 aa8.68□□□□□ -1.02
USP3-210ENST00000559192 PCDHB15Q9Y5E8 787 aa8.68□□□□□ -1.02
USP3-210ENST00000559192 TULP1O00294 542 aaPredicted RBP8.67□□□□□ -1.02
USP3-210ENST00000559192 API5Q9BZZ5 524 aaKnown RBP8.67□□□□□ -1.02
USP3-210ENST00000559192 ZNF592Q92610 1267 aa8.67□□□□□ -1.02
USP3-210ENST00000559192 SPINK5Q9NQ38 1064 aaPredicted RBP8.67□□□□□ -1.02
USP3-210ENST00000559192 GPRASP1Q5JY77 1395 aa8.67□□□□□ -1.02
USP3-210ENST00000559192 LAMC3Q9Y6N6 1575 aa8.67□□□□□ -1.02
USP3-210ENST00000559192 HSP90B1P14625 803 aaKnown RBP8.67□□□□□ -1.02
USP3-210ENST00000559192 MAGI3Q5TCQ9 1506 aa8.67□□□□□ -1.02
USP3-210ENST00000559192 CCDC141Q6ZP82 1450 aa8.67□□□□□ -1.02
USP3-210ENST00000559192 PRKAR2BP31323 418 aa8.67□□□□□ -1.02
USP3-210ENST00000559192 RABEP1Q15276 862 aa8.67□□□□□ -1.02
USP3-210ENST00000559192 MAGI1Q96QZ7 1491 aaPredicted RBP8.66□□□□□ -1.02
USP3-210ENST00000559192 PRAG1Q86YV5 1406 aa8.66□□□□□ -1.02
USP3-210ENST00000559192 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.66□□□□□ -1.02
USP3-210ENST00000559192 GCC1Q96CN9 775 aa8.66□□□□□ -1.02
USP3-210ENST00000559192 TSPY26PQ9H489 355 aa8.66□□□□□ -1.02
USP3-210ENST00000559192 GPATCH8Q9UKJ3 1502 aaKnown RBP8.66□□□□□ -1.02
USP3-210ENST00000559192 SPATA31E1Q6ZUB1 1445 aa8.66□□□□□ -1.02
USP3-210ENST00000559192 KIAA0586Q9BVV6 1533 aa8.66□□□□□ -1.02
USP3-210ENST00000559192 ZMYM4Q5VZL5 1548 aa8.66□□□□□ -1.02
USP3-210ENST00000559192 GNAI1P63096 354 aa8.66□□□□□ -1.02
USP3-210ENST00000559192 CCDC27Q2M243 656 aa8.66□□□□□ -1.02
USP3-210ENST00000559192 VGFO15240 615 aaPredicted RBP8.65□□□□□ -1.02
USP3-210ENST00000559192 NEK4P51957 841 aa8.65□□□□□ -1.02
USP3-210ENST00000559192 SSH1Q8WYL5 1049 aa8.65□□□□□ -1.02
USP3-210ENST00000559192 ISY1Q9ULR0 285 aaKnown RBP8.65□□□□□ -1.02
USP3-210ENST00000559192 DNMT1P26358 1616 aaKnown RBP8.65□□□□□ -1.02
USP3-210ENST00000559192 XPCQ01831 940 aaPredicted RBP8.65□□□□□ -1.02
USP3-210ENST00000559192 ZSCAN30Q86W11 494 aa8.65□□□□□ -1.02
USP3-210ENST00000559192 ZMYND15Q9H091 742 aa8.65□□□□□ -1.02
USP3-210ENST00000559192 PRDM10Q9NQV6 1147 aa8.65□□□□□ -1.03
USP3-210ENST00000559192 CIZ1Q9ULV3 898 aaPredicted RBP8.65□□□□□ -1.03
USP3-210ENST00000559192 MRC2Q9UBG0 1479 aa8.65□□□□□ -1.03
USP3-210ENST00000559192 RAPGEF6Q8TEU7 1601 aa8.64□□□□□ -1.03
USP3-210ENST00000559192 SYCE3A1L190 88 aa8.64□□□□□ -1.03
USP3-210ENST00000559192 TRIM27P14373 513 aa8.64□□□□□ -1.03
USP3-210ENST00000559192 COG3Q96JB2 828 aa8.64□□□□□ -1.03
USP3-210ENST00000559192 PER1O15534 1290 aaPredicted RBP8.64□□□□□ -1.03
USP3-210ENST00000559192 RLBP1P12271 317 aa8.64□□□□□ -1.03
USP3-210ENST00000559192 WDR62O43379 1518 aa8.64□□□□□ -1.03
USP3-210ENST00000559192 CLCN1P35523 988 aa8.64□□□□□ -1.03
USP3-210ENST00000559192 TWISTNBQ3B726 338 aaPredicted RBP8.64□□□□□ -1.03
USP3-210ENST00000559192 LMOD2Q6P5Q4 547 aa8.64□□□□□ -1.03
USP3-210ENST00000559192 STAC3Q96MF2 364 aa8.64□□□□□ -1.03
USP3-210ENST00000559192 NUP153P49790 1475 aaKnown RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms