RNA–Protein interactions for RNA: ENST00000554994.5

ATXN3-231, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 922 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-231	ENST00000554994	KDM5B	Q9UGL1	1544 aa		8	□□□□□ -1.13
ATXN3-231	ENST00000554994	MED1	Q15648	1581 aa	Predicted RBP	8	□□□□□ -1.13
ATXN3-231	ENST00000554994	GRXCR2	A6NFK2	248 aa		7.99	□□□□□ -1.13
ATXN3-231	ENST00000554994	RAPGEF3	O95398	923 aa		7.98	□□□□□ -1.13
ATXN3-231	ENST00000554994	GGCX	P38435	758 aa		7.98	□□□□□ -1.13
ATXN3-231	ENST00000554994	PDIA6	Q15084	440 aa		7.98	□□□□□ -1.13
ATXN3-231	ENST00000554994	NUDT18	Q6ZVK8	323 aa		7.98	□□□□□ -1.13
ATXN3-231	ENST00000554994	CARMIL2	Q6F5E8	1435 aa		7.97	□□□□□ -1.13
ATXN3-231	ENST00000554994	PRIM1	P49642	420 aa	Known RBP	7.97	□□□□□ -1.13
ATXN3-231	ENST00000554994	YEATS2	Q9ULM3	1422 aa		7.96	□□□□□ -1.13
ATXN3-231	ENST00000554994	CFAP43	Q8NDM7	1665 aa		7.96	□□□□□ -1.13
ATXN3-231	ENST00000554994	UBAP1L	F5GYI3	381 aa		7.96	□□□□□ -1.14
ATXN3-231	ENST00000554994	CDHR5	Q9HBB8	845 aa		7.96	□□□□□ -1.14
ATXN3-231	ENST00000554994	STRC	Q7RTU9	1775 aa		7.95	□□□□□ -1.14
ATXN3-231	ENST00000554994	ARAP3	Q8WWN8	1544 aa		7.95	□□□□□ -1.14
ATXN3-231	ENST00000554994	SPDYE16	A6NNV3	312 aa	Predicted RBP	7.95	□□□□□ -1.14
ATXN3-231	ENST00000554994	LTBP4	Q8N2S1	1624 aa		7.95	□□□□□ -1.14
ATXN3-231	ENST00000554994	MLEC	Q14165	292 aa		7.94	□□□□□ -1.14
ATXN3-231	ENST00000554994	SWT1	Q5T5J6	900 aa	Known RBP	7.94	□□□□□ -1.14
ATXN3-231	ENST00000554994	BIVM-ERCC5	R4GMW8	1640 aa		7.93	□□□□□ -1.14
ATXN3-231	ENST00000554994	PKDCC	Q504Y2	493 aa		7.92	□□□□□ -1.14
ATXN3-231	ENST00000554994	FRMPD1	Q5SYB0	1578 aa		7.92	□□□□□ -1.14
ATXN3-231	ENST00000554994	HSPA1L	P34931	641 aa		7.91	□□□□□ -1.14
ATXN3-231	ENST00000554994	DISP1	Q96F81	1524 aa		7.91	□□□□□ -1.14
ATXN3-231	ENST00000554994	PREX1	Q8TCU6	1659 aa		7.9	□□□□□ -1.14
ATXN3-231	ENST00000554994	ARHGEF40	Q8TER5	1519 aa		7.9	□□□□□ -1.14
ATXN3-231	ENST00000554994	IQSEC2	Q5JU85	1478 aa		7.9	□□□□□ -1.14
ATXN3-231	ENST00000554994	ZPR1	O75312	459 aa		7.9	□□□□□ -1.14
ATXN3-231	ENST00000554994	SLC19A1	P41440	591 aa		7.9	□□□□□ -1.14
ATXN3-231	ENST00000554994	CEBPA	P49715	358 aa	Predicted RBP	7.9	□□□□□ -1.14
ATXN3-231	ENST00000554994	SLF2	Q8IX21	1173 aa		7.9	□□□□□ -1.14
ATXN3-231	ENST00000554994	NECTIN2	Q92692	538 aa		7.9	□□□□□ -1.14
ATXN3-231	ENST00000554994	TMUB1	Q9BVT8	246 aa		7.9	□□□□□ -1.14
ATXN3-231	ENST00000554994	PADI6	Q6TGC4	694 aa		7.89	□□□□□ -1.15
ATXN3-231	ENST00000554994	TRIM67	Q6ZTA4	783 aa		7.89	□□□□□ -1.15
ATXN3-231	ENST00000554994	SIGLEC1	Q9BZZ2	1709 aa		7.89	□□□□□ -1.15
ATXN3-231	ENST00000554994	IQGAP2	Q13576	1575 aa		7.88	□□□□□ -1.15
ATXN3-231	ENST00000554994	PTPRT	O14522	1441 aa		7.88	□□□□□ -1.15
ATXN3-231	ENST00000554994	ARID3C	A6NKF2	412 aa		7.88	□□□□□ -1.15
ATXN3-231	ENST00000554994	POTEC	B2RU33	542 aa		7.88	□□□□□ -1.15
ATXN3-231	ENST00000554994	RNF223	E7ERA6	249 aa		7.88	□□□□□ -1.15
ATXN3-231	ENST00000554994	SLC4A3	P48751	1232 aa		7.88	□□□□□ -1.15
ATXN3-231	ENST00000554994	MYT1	Q01538	1121 aa		7.88	□□□□□ -1.15
ATXN3-231	ENST00000554994	PCDHB3	Q9Y5E6	796 aa		7.88	□□□□□ -1.15
ATXN3-231	ENST00000554994	FER1L4	A9Z1Z3	1794 aa		7.88	□□□□□ -1.15
ATXN3-231	ENST00000554994	TTC37	Q6PGP7	1564 aa		7.88	□□□□□ -1.15
ATXN3-231	ENST00000554994	PIP4K2B	P78356	416 aa		7.87	□□□□□ -1.15
ATXN3-231	ENST00000554994	FANCA	O15360	1455 aa		7.87	□□□□□ -1.15
ATXN3-231	ENST00000554994	POGZ	Q7Z3K3	1410 aa		7.86	□□□□□ -1.15
ATXN3-231	ENST00000554994	IGF1R	P08069	1367 aa		7.86	□□□□□ -1.15
ATXN3-231	ENST00000554994	FAM187A	A6NFU0	413 aa		7.86	□□□□□ -1.15
ATXN3-231	ENST00000554994	PPEF1	O14829	653 aa	Predicted RBP	7.86	□□□□□ -1.15
ATXN3-231	ENST00000554994	TLL1	O43897	1013 aa		7.86	□□□□□ -1.15
ATXN3-231	ENST00000554994	OSBP	P22059	807 aa		7.86	□□□□□ -1.15
ATXN3-231	ENST00000554994	E2F4	Q16254	413 aa		7.86	□□□□□ -1.15
ATXN3-231	ENST00000554994	BLOC1S3	Q6QNY0	202 aa		7.86	□□□□□ -1.15
ATXN3-231	ENST00000554994	UHRF1BP1	Q6BDS2	1440 aa		7.86	□□□□□ -1.15
ATXN3-231	ENST00000554994	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	7.85	□□□□□ -1.15
ATXN3-231	ENST00000554994	EMID1	Q96A84	441 aa	Predicted RBP	7.85	□□□□□ -1.15
ATXN3-231	ENST00000554994	RBM27	Q9P2N5	1060 aa	Known RBP	7.85	□□□□□ -1.15
ATXN3-231	ENST00000554994	TNFRSF10A	O00220	468 aa		7.84	□□□□□ -1.15
ATXN3-231	ENST00000554994	DGAT1	O75907	488 aa		7.84	□□□□□ -1.15
ATXN3-231	ENST00000554994	SPRYD7	Q5W111	196 aa		7.84	□□□□□ -1.15
ATXN3-231	ENST00000554994	KIAA0556	O60303	1618 aa		7.84	□□□□□ -1.15
ATXN3-231	ENST00000554994	ZNF697	Q5TEC3	545 aa		7.83	□□□□□ -1.16
ATXN3-231	ENST00000554994	ZNF598	Q86UK7	904 aa	Known RBP	7.83	□□□□□ -1.16
ATXN3-231	ENST00000554994	PRR14	Q9BWN1	585 aa		7.83	□□□□□ -1.16
ATXN3-231	ENST00000554994	WDR70	Q9NW82	654 aa		7.83	□□□□□ -1.16
ATXN3-231	ENST00000554994	AKNA	Q7Z591	1439 aa		7.83	□□□□□ -1.16
ATXN3-231	ENST00000554994	PHLDB1	Q86UU1	1377 aa		7.82	□□□□□ -1.16
ATXN3-231	ENST00000554994	NEO1	Q92859	1461 aa		7.81	□□□□□ -1.16
ATXN3-231	ENST00000554994	ST8SIA5	O15466	376 aa		7.81	□□□□□ -1.16
ATXN3-231	ENST00000554994	S1PR4	O95977	384 aa		7.81	□□□□□ -1.16
ATXN3-231	ENST00000554994	LIAT1	Q6ZQX7	453 aa		7.81	□□□□□ -1.16
ATXN3-231	ENST00000554994	TTC13	Q8NBP0	860 aa		7.81	□□□□□ -1.16
ATXN3-231	ENST00000554994	ZFYVE16	Q7Z3T8	1539 aa		7.8	□□□□□ -1.16
ATXN3-231	ENST00000554994	NPDC1	Q9NQX5	325 aa	Predicted RBP	7.8	□□□□□ -1.16
ATXN3-231	ENST00000554994	RGS17	Q9UGC6	210 aa	Predicted RBP	7.8	□□□□□ -1.16
ATXN3-231	ENST00000554994	ABCA9	Q8IUA7	1624 aa		7.8	□□□□□ -1.16
ATXN3-231	ENST00000554994	CARMIL1	Q5VZK9	1371 aa		7.8	□□□□□ -1.16
ATXN3-231	ENST00000554994	NCOA1	Q15788	1441 aa		7.79	□□□□□ -1.16
ATXN3-231	ENST00000554994	UGGT2	Q9NYU1	1516 aa		7.79	□□□□□ -1.16
ATXN3-231	ENST00000554994	ARHGEF12	Q9NZN5	1544 aa		7.79	□□□□□ -1.16
ATXN3-231	ENST00000554994	PRR20E	P86478	221 aa		7.79	□□□□□ -1.16
ATXN3-231	ENST00000554994	PRR20C	P86479	221 aa		7.79	□□□□□ -1.16
ATXN3-231	ENST00000554994	PRR20D	P86480	221 aa		7.79	□□□□□ -1.16
ATXN3-231	ENST00000554994	PRR20B	P86481	221 aa		7.79	□□□□□ -1.16
ATXN3-231	ENST00000554994	PRR20A	P86496	221 aa		7.79	□□□□□ -1.16
ATXN3-231	ENST00000554994	ANKLE1	Q8NAG6	615 aa		7.79	□□□□□ -1.16
ATXN3-231	ENST00000554994	EYA1	Q99502	592 aa		7.79	□□□□□ -1.16
ATXN3-231	ENST00000554994	DENND4B	O75064	1496 aa	Predicted RBP	7.79	□□□□□ -1.16
ATXN3-231	ENST00000554994	ABCA8	O94911	1581 aa		7.79	□□□□□ -1.16
ATXN3-231	ENST00000554994	RICTOR	Q6R327	1708 aa		7.78	□□□□□ -1.16
ATXN3-231	ENST00000554994	SETD1A	O15047	1707 aa	Known RBP	7.78	□□□□□ -1.16
ATXN3-231	ENST00000554994	KIF27	Q86VH2	1401 aa		7.78	□□□□□ -1.16
ATXN3-231	ENST00000554994	BBX	Q8WY36	941 aa	Predicted RBP	7.77	□□□□□ -1.17
ATXN3-231	ENST00000554994	GDF9	O60383	454 aa		7.76	□□□□□ -1.17
ATXN3-231	ENST00000554994	FOXC1	Q12948	553 aa		7.76	□□□□□ -1.17
ATXN3-231	ENST00000554994	KMT5B	Q4FZB7	885 aa		7.76	□□□□□ -1.17
ATXN3-231	ENST00000554994	TREML4	Q6UXN2	200 aa		7.76	□□□□□ -1.17

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