RNA–Protein interactions for RNA: ENST00000553335.5

TMEM260-204, Transcript of transmembrane protein 260, humanhuman

TSL 3

Gene TMEM260, Length 560 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-204ENST00000553335 ASXL1Q8IXJ9 1541 aa13.77□□□□□ -0.21
TMEM260-204ENST00000553335 METP08581 1390 aa13.76□□□□□ -0.21
TMEM260-204ENST00000553335 CERKQ8TCT0 537 aa13.76□□□□□ -0.21
TMEM260-204ENST00000553335 YTHDC2Q9H6S0 1430 aaKnown RBP13.75□□□□□ -0.21
TMEM260-204ENST00000553335 ARHGEF28Q8N1W1 1705 aaKnown RBP13.75□□□□□ -0.21
TMEM260-204ENST00000553335 XRN1Q8IZH2 1706 aaKnown RBP13.73□□□□□ -0.21
TMEM260-204ENST00000553335 LRPPRCP42704 1394 aaKnown RBP13.73□□□□□ -0.21
TMEM260-204ENST00000553335 EIF3AQ14152 1382 aaKnown RBP13.73□□□□□ -0.21
TMEM260-204ENST00000553335 NWD1Q149M9 1564 aa13.73□□□□□ -0.21
TMEM260-204ENST00000553335 DLC1Q96QB1 1528 aa13.73□□□□□ -0.21
TMEM260-204ENST00000553335 ABCC11Q96J66 1382 aa13.72□□□□□ -0.21
TMEM260-204ENST00000553335 STK26Q9P289 416 aa13.72□□□□□ -0.21
TMEM260-204ENST00000553335 TRAK1Q9UPV9 953 aa13.72□□□□□ -0.21
TMEM260-204ENST00000553335 AMOTL2Q9Y2J4 779 aa13.72□□□□□ -0.21
TMEM260-204ENST00000553335 CPS1P31327 1500 aa13.72□□□□□ -0.21
TMEM260-204ENST00000553335 PTPRUQ92729 1446 aa13.72□□□□□ -0.21
TMEM260-204ENST00000553335 KCNA6P17658 529 aa13.71□□□□□ -0.21
TMEM260-204ENST00000553335 EIF4G2P78344 907 aaKnown RBP eCLIP13.71□□□□□ -0.21
TMEM260-204ENST00000553335 TECPR2O15040 1411 aa13.71□□□□□ -0.22
TMEM260-204ENST00000553335 STRCP1A6NGW2 1772 aa13.71□□□□□ -0.22
TMEM260-204ENST00000553335 USP47Q96K76 1375 aa13.71□□□□□ -0.22
TMEM260-204ENST00000553335 SIRT1Q96EB6 747 aa13.7□□□□□ -0.22
TMEM260-204ENST00000553335 QRICH2Q9H0J4 1663 aa13.69□□□□□ -0.22
TMEM260-204ENST00000553335 VASPP50552 380 aaPredicted RBP13.69□□□□□ -0.22
TMEM260-204ENST00000553335 NKTRP30414 1462 aaKnown RBP13.68□□□□□ -0.22
TMEM260-204ENST00000553335 PTCH1Q13635 1447 aa13.68□□□□□ -0.22
TMEM260-204ENST00000553335 FAM135BQ49AJ0 1406 aa13.68□□□□□ -0.22
TMEM260-204ENST00000553335 POGKQ9P215 609 aa13.68□□□□□ -0.22
TMEM260-204ENST00000553335 DSG3P32926 999 aa13.67□□□□□ -0.22
TMEM260-204ENST00000553335 CENPJQ9HC77 1338 aaPredicted RBP13.66□□□□□ -0.22
TMEM260-204ENST00000553335 HSPA5P11021 654 aaKnown RBP13.66□□□□□ -0.22
TMEM260-204ENST00000553335 PRAM1Q96QH2 718 aa13.66□□□□□ -0.22
TMEM260-204ENST00000553335 ST20-MTHFSA0A0A6YYL1 179 aa13.65□□□□□ -0.22
TMEM260-204ENST00000553335 ROBO2Q9HCK4 1378 aa13.65□□□□□ -0.22
TMEM260-204ENST00000553335 ZNF335Q9H4Z2 1342 aaPredicted RBP13.64□□□□□ -0.23
TMEM260-204ENST00000553335 WAPLQ7Z5K2 1190 aa13.64□□□□□ -0.23
TMEM260-204ENST00000553335 PROSER2Q86WR7 435 aaPredicted RBP13.64□□□□□ -0.23
TMEM260-204ENST00000553335 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.63□□□□□ -0.23
TMEM260-204ENST00000553335 XIRP1Q702N8 1843 aaKnown RBP13.62□□□□□ -0.23
TMEM260-204ENST00000553335 SBNO2Q9Y2G9 1366 aa13.62□□□□□ -0.23
TMEM260-204ENST00000553335 SAFB2Q14151 953 aaKnown RBP eCLIP13.62□□□□□ -0.23
TMEM260-204ENST00000553335 NCOA3Q9Y6Q9 1424 aa13.62□□□□□ -0.23
TMEM260-204ENST00000553335 NALCNQ8IZF0 1738 aa13.61□□□□□ -0.23
TMEM260-204ENST00000553335 PLEKHH1Q9ULM0 1364 aa13.61□□□□□ -0.23
TMEM260-204ENST00000553335 HIRIP3Q9BW71 556 aaPredicted RBP13.61□□□□□ -0.23
TMEM260-204ENST00000553335 ADGRB2O60241 1585 aa13.6□□□□□ -0.23
TMEM260-204ENST00000553335 TMF1P82094 1093 aa13.6□□□□□ -0.23
TMEM260-204ENST00000553335 C14orf37Q86TY3 774 aa13.6□□□□□ -0.23
TMEM260-204ENST00000553335 LTBP4Q8N2S1 1624 aa13.6□□□□□ -0.23
TMEM260-204ENST00000553335 MINK1Q8N4C8 1332 aaPredicted RBP13.6□□□□□ -0.23
TMEM260-204ENST00000553335 LRRC7Q96NW7 1537 aa13.59□□□□□ -0.23
TMEM260-204ENST00000553335 TMEM94Q12767 1356 aa13.58□□□□□ -0.23
TMEM260-204ENST00000553335 TESK2Q96S53 571 aa13.58□□□□□ -0.24
TMEM260-204ENST00000553335 EVC2Q86UK5 1308 aa13.58□□□□□ -0.24
TMEM260-204ENST00000553335 ADGRL3Q9HAR2 1447 aa13.57□□□□□ -0.24
TMEM260-204ENST00000553335 CDCA8Q53HL2 280 aa13.57□□□□□ -0.24
TMEM260-204ENST00000553335 IFNLR1Q8IU57 520 aaPredicted RBP13.57□□□□□ -0.24
TMEM260-204ENST00000553335 CDC42BPGQ6DT37 1551 aa13.57□□□□□ -0.24
TMEM260-204ENST00000553335 FMN2Q9NZ56 1722 aa13.56□□□□□ -0.24
TMEM260-204ENST00000553335 TULP4Q9NRJ4 1543 aa13.56□□□□□ -0.24
TMEM260-204ENST00000553335 ZNF316A6NFI3 1004 aaPredicted RBP13.56□□□□□ -0.24
TMEM260-204ENST00000553335 RBM33Q96EV2 1170 aaKnown RBP13.56□□□□□ -0.24
TMEM260-204ENST00000553335 MSH6P52701 1360 aa13.56□□□□□ -0.24
TMEM260-204ENST00000553335 IQSEC2Q5JU85 1478 aa13.55□□□□□ -0.24
TMEM260-204ENST00000553335 WASLO00401 505 aaPredicted RBP13.55□□□□□ -0.24
TMEM260-204ENST00000553335 ZNF692Q9BU19 519 aaPredicted RBP13.55□□□□□ -0.24
TMEM260-204ENST00000553335 C19orf44Q9H6X5 657 aa13.55□□□□□ -0.24
TMEM260-204ENST00000553335 ITSN1Q15811 1721 aa13.55□□□□□ -0.24
TMEM260-204ENST00000553335 SRPK2P78362 688 aaKnown RBP13.54□□□□□ -0.24
TMEM260-204ENST00000553335 CDK19Q9BWU1 502 aa13.54□□□□□ -0.24
TMEM260-204ENST00000553335 DCCP43146 1447 aa13.54□□□□□ -0.24
TMEM260-204ENST00000553335 RGPD8O14715 1765 aaPredicted RBP13.53□□□□□ -0.24
TMEM260-204ENST00000553335 UBAP1LF5GYI3 381 aa13.53□□□□□ -0.24
TMEM260-204ENST00000553335 PUS7Q96PZ0 661 aaKnown RBP13.53□□□□□ -0.24
TMEM260-204ENST00000553335 DISP3Q9P2K9 1392 aa13.53□□□□□ -0.24
TMEM260-204ENST00000553335 ATF3P18847 181 aa13.52□□□□□ -0.25
TMEM260-204ENST00000553335 CADPS2Q86UW7 1296 aa13.51□□□□□ -0.25
TMEM260-204ENST00000553335 POLR3GLQ9BT43 218 aa13.51□□□□□ -0.25
TMEM260-204ENST00000553335 CABP2Q9NPB3 220 aa13.51□□□□□ -0.25
TMEM260-204ENST00000553335 USP32Q8NFA0 1604 aa13.5□□□□□ -0.25
TMEM260-204ENST00000553335 ATAD2Q6PL18 1390 aa13.5□□□□□ -0.25
TMEM260-204ENST00000553335 SPDYE2BA6NHP3 402 aa13.5□□□□□ -0.25
TMEM260-204ENST00000553335 SPDYE6P0CI01 402 aa13.5□□□□□ -0.25
TMEM260-204ENST00000553335 SPDYE2Q495Y8 402 aa13.5□□□□□ -0.25
TMEM260-204ENST00000553335 TOPAZ1Q8N9V7 1692 aa13.5□□□□□ -0.25
TMEM260-204ENST00000553335 ANKARQ7Z5J8 1434 aa13.49□□□□□ -0.25
TMEM260-204ENST00000553335 CCDC7Q96M83 1385 aa13.49□□□□□ -0.25
TMEM260-204ENST00000553335 KIF7Q2M1P5 1343 aa13.49□□□□□ -0.25
TMEM260-204ENST00000553335 C11orf95C9JLR9 678 aaPredicted RBP13.49□□□□□ -0.25
TMEM260-204ENST00000553335 WASHC2AQ641Q2 1341 aa13.48□□□□□ -0.25
TMEM260-204ENST00000553335 MYOM1P52179 1685 aa13.48□□□□□ -0.25
TMEM260-204ENST00000553335 NUDT16Q96DE0 195 aaKnown RBP13.48□□□□□ -0.25
TMEM260-204ENST00000553335 ATP7BP35670 1465 aa13.48□□□□□ -0.25
TMEM260-204ENST00000553335 NUTM2FA1L443 756 aa13.47□□□□□ -0.25
TMEM260-204ENST00000553335 CCDC61Q9Y6R9 512 aa13.47□□□□□ -0.25
TMEM260-204ENST00000553335 KIF1AQ12756 1690 aa13.47□□□□□ -0.25
TMEM260-204ENST00000553335 NINLQ9Y2I6 1382 aa13.46□□□□□ -0.25
TMEM260-204ENST00000553335 TOM1O60784 492 aa13.46□□□□□ -0.25
TMEM260-204ENST00000553335 TMC1Q8TDI8 760 aa13.46□□□□□ -0.25
TMEM260-204ENST00000553335 SSUH2Q9Y2M2 353 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms