RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 ROBO1Q9Y6N7 1651 aa11.84□□□□□ -0.51
NEK3-201ENST00000550331 PIK3C2BO00750 1634 aa11.83□□□□□ -0.52
NEK3-201ENST00000550331 NOS1P29475 1434 aa11.83□□□□□ -0.52
NEK3-201ENST00000550331 FAM135BQ49AJ0 1406 aa11.83□□□□□ -0.52
NEK3-201ENST00000550331 RPRD2Q5VT52 1461 aaKnown RBP11.82□□□□□ -0.52
NEK3-201ENST00000550331 ANKRD50Q9ULJ7 1429 aa11.81□□□□□ -0.52
NEK3-201ENST00000550331 IDI1Q13907 227 aa11.8□□□□□ -0.52
NEK3-201ENST00000550331 FAM50AQ14320 339 aaKnown RBP11.8□□□□□ -0.52
NEK3-201ENST00000550331 RASEFQ8IZ41 740 aa11.8□□□□□ -0.52
NEK3-201ENST00000550331 PCDHB13Q9Y5F0 798 aa11.8□□□□□ -0.52
NEK3-201ENST00000550331 ADGRB3O60242 1522 aa11.8□□□□□ -0.52
NEK3-201ENST00000550331 TMEM94Q12767 1356 aa11.79□□□□□ -0.52
NEK3-201ENST00000550331 KRTAP3-3Q9BYR6 98 aa11.79□□□□□ -0.52
NEK3-201ENST00000550331 KRTAP3-2Q9BYR7 98 aa11.79□□□□□ -0.52
NEK3-201ENST00000550331 SLC52A1Q9NWF4 448 aa11.79□□□□□ -0.52
NEK3-201ENST00000550331 PHLPP1O60346 1717 aa11.79□□□□□ -0.52
NEK3-201ENST00000550331 IRX5P78411 483 aaPredicted RBP11.78□□□□□ -0.52
NEK3-201ENST00000550331 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.78□□□□□ -0.52
NEK3-201ENST00000550331 EMP3P54852 163 aa11.77□□□□□ -0.53
NEK3-201ENST00000550331 TET3O43151 1660 aa11.76□□□□□ -0.53
NEK3-201ENST00000550331 PROSER2Q86WR7 435 aaPredicted RBP11.76□□□□□ -0.53
NEK3-201ENST00000550331 ROCK1Q13464 1354 aa11.76□□□□□ -0.53
NEK3-201ENST00000550331 UNC13BO14795 1591 aa11.75□□□□□ -0.53
NEK3-201ENST00000550331 PLEKHG5O94827 1062 aa11.75□□□□□ -0.53
NEK3-201ENST00000550331 KCNA6P17658 529 aa11.75□□□□□ -0.53
NEK3-201ENST00000550331 RBM33Q96EV2 1170 aaKnown RBP11.75□□□□□ -0.53
NEK3-201ENST00000550331 ZFYVE9O95405 1425 aa11.74□□□□□ -0.53
NEK3-201ENST00000550331 NKTRP30414 1462 aaKnown RBP11.74□□□□□ -0.53
NEK3-201ENST00000550331 NWD1Q149M9 1564 aa11.74□□□□□ -0.53
NEK3-201ENST00000550331 SLC26A8Q96RN1 970 aa11.73□□□□□ -0.53
NEK3-201ENST00000550331 TMEM106CQ9BVX2 250 aa11.73□□□□□ -0.53
NEK3-201ENST00000550331 JCADQ9P266 1359 aa11.73□□□□□ -0.53
NEK3-201ENST00000550331 MSH6P52701 1360 aa11.72□□□□□ -0.53
NEK3-201ENST00000550331 PLEKHG1Q9ULL1 1385 aa11.72□□□□□ -0.53
NEK3-201ENST00000550331 HDGFP51858 240 aaKnown RBP11.71□□□□□ -0.53
NEK3-201ENST00000550331 HS3ST6Q96QI5 342 aa11.71□□□□□ -0.53
NEK3-201ENST00000550331 OCEL1Q9H607 264 aa11.71□□□□□ -0.53
NEK3-201ENST00000550331 GCC2Q8IWJ2 1684 aa11.71□□□□□ -0.54
NEK3-201ENST00000550331 COL16A1Q07092 1604 aaPredicted RBP11.71□□□□□ -0.54
NEK3-201ENST00000550331 RIMS2Q9UQ26 1411 aa11.7□□□□□ -0.54
NEK3-201ENST00000550331 UPF1Q92900 1129 aaKnown RBP eCLIP11.7□□□□□ -0.54
NEK3-201ENST00000550331 SLAIN2Q9P270 581 aa11.7□□□□□ -0.54
NEK3-201ENST00000550331 TMEM131LA2VDJ0 1609 aa11.7□□□□□ -0.54
NEK3-201ENST00000550331 IQGAP3Q86VI3 1631 aa11.7□□□□□ -0.54
NEK3-201ENST00000550331 CHD2O14647 1828 aaKnown RBP11.7□□□□□ -0.54
NEK3-201ENST00000550331 PPP1R15AO75807 674 aaPredicted RBP11.69□□□□□ -0.54
NEK3-201ENST00000550331 MEX3CQ5U5Q3 659 aaKnown RBP11.69□□□□□ -0.54
NEK3-201ENST00000550331 IFNL1Q8IU54 200 aa11.69□□□□□ -0.54
NEK3-201ENST00000550331 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.69□□□□□ -0.54
NEK3-201ENST00000550331 TRIM52Q96A61 297 aa11.69□□□□□ -0.54
NEK3-201ENST00000550331 BCANQ96GW7 911 aa11.69□□□□□ -0.54
NEK3-201ENST00000550331 LRP6O75581 1613 aa11.68□□□□□ -0.54
NEK3-201ENST00000550331 MYO5BQ9ULV0 1848 aa11.68□□□□□ -0.54
NEK3-201ENST00000550331 ZNF772Q68DY9 489 aaPredicted RBP11.67□□□□□ -0.54
NEK3-201ENST00000550331 PROM2Q8N271 834 aa11.67□□□□□ -0.54
NEK3-201ENST00000550331 TBX22Q9Y458 520 aa11.67□□□□□ -0.54
NEK3-201ENST00000550331 E9PCH4 1651 aa11.67□□□□□ -0.54
NEK3-201ENST00000550331 NUP155O75694 1391 aa11.67□□□□□ -0.54
NEK3-201ENST00000550331 SPATA31A6Q5VVP1 1343 aa11.66□□□□□ -0.54
NEK3-201ENST00000550331 SHPRHQ149N8 1683 aa11.66□□□□□ -0.54
NEK3-201ENST00000550331 POTEB3A0JP26 581 aa11.66□□□□□ -0.54
NEK3-201ENST00000550331 POTEBQ6S5H4 581 aa11.66□□□□□ -0.54
NEK3-201ENST00000550331 NCOA3Q9Y6Q9 1424 aa11.66□□□□□ -0.54
NEK3-201ENST00000550331 DIP2AQ14689 1571 aa11.66□□□□□ -0.54
NEK3-201ENST00000550331 PIK3R4Q99570 1358 aa11.66□□□□□ -0.54
NEK3-201ENST00000550331 FAM205CA6NFA0 338 aa11.65□□□□□ -0.54
NEK3-201ENST00000550331 ADAMTS13Q76LX8 1427 aa11.65□□□□□ -0.54
NEK3-201ENST00000550331 CHGAP10645 457 aaKnown RBP11.64□□□□□ -0.55
NEK3-201ENST00000550331 RXRBP28702 533 aa11.63□□□□□ -0.55
NEK3-201ENST00000550331 ITGAEP38570 1179 aa11.63□□□□□ -0.55
NEK3-201ENST00000550331 C14orf37Q86TY3 774 aa11.63□□□□□ -0.55
NEK3-201ENST00000550331 AHDC1Q5TGY3 1603 aaPredicted RBP11.63□□□□□ -0.55
NEK3-201ENST00000550331 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.63□□□□□ -0.55
NEK3-201ENST00000550331 TRPM2O94759 1503 aa11.61□□□□□ -0.55
NEK3-201ENST00000550331 RRBP1Q9P2E9 1410 aaKnown RBP11.6□□□□□ -0.55
NEK3-201ENST00000550331 CDK12Q9NYV4 1490 aaPredicted RBP11.6□□□□□ -0.55
NEK3-201ENST00000550331 NUTM2BA6NNL0 878 aaPredicted RBP11.6□□□□□ -0.55
NEK3-201ENST00000550331 NUTM2EB1AL46 878 aaPredicted RBP11.6□□□□□ -0.55
NEK3-201ENST00000550331 NUTM2AQ8IVF1 878 aaPredicted RBP11.6□□□□□ -0.55
NEK3-201ENST00000550331 MIER1Q8N108 512 aa11.6□□□□□ -0.55
NEK3-201ENST00000550331 SETBP1Q9Y6X0 1596 aa11.59□□□□□ -0.55
NEK3-201ENST00000550331 ATF3P18847 181 aa11.59□□□□□ -0.55
NEK3-201ENST00000550331 NUTM2DQ5VT03 806 aaPredicted RBP11.59□□□□□ -0.55
NEK3-201ENST00000550331 CADPS2Q86UW7 1296 aa11.59□□□□□ -0.55
NEK3-201ENST00000550331 PPARGC1BQ86YN6 1023 aaKnown RBP11.58□□□□□ -0.56
NEK3-201ENST00000550331 C19orf44Q9H6X5 657 aa11.58□□□□□ -0.56
NEK3-201ENST00000550331 RNF166Q96A37 237 aaPredicted RBP11.57□□□□□ -0.56
NEK3-201ENST00000550331 AMOTL2Q9Y2J4 779 aa11.57□□□□□ -0.56
NEK3-201ENST00000550331 DCCP43146 1447 aa11.57□□□□□ -0.56
NEK3-201ENST00000550331 NAIPQ13075 1403 aa11.57□□□□□ -0.56
NEK3-201ENST00000550331 PTPRUQ92729 1446 aa11.57□□□□□ -0.56
NEK3-201ENST00000550331 SPHKAPQ2M3C7 1700 aa11.57□□□□□ -0.56
NEK3-201ENST00000550331 AFF2P51816 1311 aa11.57□□□□□ -0.56
NEK3-201ENST00000550331 C3orf67Q6ZVT6 689 aa11.56□□□□□ -0.56
NEK3-201ENST00000550331 NRXN3Q9Y4C0 1643 aa11.56□□□□□ -0.56
NEK3-201ENST00000550331 XRN1Q8IZH2 1706 aaKnown RBP11.55□□□□□ -0.56
NEK3-201ENST00000550331 SRCAPQ6ZRS2 3230 aa11.55□□□□□ -0.56
NEK3-201ENST00000550331 RGS12O14924 1447 aa11.55□□□□□ -0.56
NEK3-201ENST00000550331 BRINP3Q76B58 766 aa11.55□□□□□ -0.56
NEK3-201ENST00000550331 CLTCL1P53675 1640 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms