RNA–Protein interactions for RNA: ENST00000540756.5

TTC3-225, Transcript of tetratricopeptide repeat domain 3, human

TSL 2 BASIC

Gene TTC3, Length 2,025 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-225	ENST00000540756	CARD14	Q9BXL6	1004 aa		33.49	■■■□□ 2.95
TTC3-225	ENST00000540756	ZNF142	P52746	1687 aa	Predicted RBP	33.49	■■■□□ 2.95
TTC3-225	ENST00000540756	KNSTRN	Q9Y448	316 aa		33.48	■■■□□ 2.95
TTC3-225	ENST00000540756	PARD3	Q8TEW0	1356 aa		33.48	■■■□□ 2.95
TTC3-225	ENST00000540756	RALBP1	Q15311	655 aa		33.48	■■■□□ 2.95
TTC3-225	ENST00000540756	AMER1	Q5JTC6	1135 aa	Predicted RBP	33.46	■■■□□ 2.95
TTC3-225	ENST00000540756	SRPK2	P78362	688 aa	Known RBP	33.45	■■■□□ 2.95
TTC3-225	ENST00000540756	KNDC1	Q76NI1	1749 aa		33.45	■■■□□ 2.94
TTC3-225	ENST00000540756	TECPR2	O15040	1411 aa		33.43	■■■□□ 2.94
TTC3-225	ENST00000540756	PTPRU	Q92729	1446 aa		33.43	■■■□□ 2.94
TTC3-225	ENST00000540756	MYBBP1A	Q9BQG0	1328 aa	Known RBP	33.43	■■■□□ 2.94
TTC3-225	ENST00000540756	PUS7	Q96PZ0	661 aa	Known RBP	33.41	■■■□□ 2.94
TTC3-225	ENST00000540756	CDK19	Q9BWU1	502 aa		33.41	■■■□□ 2.94
TTC3-225	ENST00000540756	ROBO2	Q9HCK4	1378 aa		33.41	■■■□□ 2.94
TTC3-225	ENST00000540756	FAM9B	Q8IZU0	186 aa		33.41	■■■□□ 2.94
TTC3-225	ENST00000540756	CPS1	P31327	1500 aa		33.4	■■■□□ 2.94
TTC3-225	ENST00000540756	TBX22	Q9Y458	520 aa		33.39	■■■□□ 2.94
TTC3-225	ENST00000540756	FAM135B	Q49AJ0	1406 aa		33.37	■■■□□ 2.93
TTC3-225	ENST00000540756	ANKLE2	Q86XL3	938 aa		33.35	■■■□□ 2.93
TTC3-225	ENST00000540756	SIRT1	Q96EB6	747 aa		33.35	■■■□□ 2.93
TTC3-225	ENST00000540756	AMOTL2	Q9Y2J4	779 aa		33.33	■■■□□ 2.93
TTC3-225	ENST00000540756	NSD3	Q9BZ95	1437 aa		33.33	■■■□□ 2.93
TTC3-225	ENST00000540756	ATAD2	Q6PL18	1390 aa		33.3	■■■□□ 2.92
TTC3-225	ENST00000540756	NLRP13	Q86W25	1043 aa		33.29	■■■□□ 2.92
TTC3-225	ENST00000540756	DIP2A	Q14689	1571 aa		33.29	■■■□□ 2.92
TTC3-225	ENST00000540756	BRD4	O60885	1362 aa	Predicted RBP	33.29	■■■□□ 2.92
TTC3-225	ENST00000540756	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	33.28	■■■□□ 2.92
TTC3-225	ENST00000540756	ANKRD36B	Q8N2N9	1353 aa		33.28	■■■□□ 2.92
TTC3-225	ENST00000540756	NPC1L1	Q9UHC9	1359 aa		33.28	■■■□□ 2.92
TTC3-225	ENST00000540756	WASL	O00401	505 aa	Predicted RBP	33.28	■■■□□ 2.92
TTC3-225	ENST00000540756	PNISR	Q8TF01	805 aa	Known RBP	33.26	■■■□□ 2.92
TTC3-225	ENST00000540756	HNRNPU	Q00839	825 aa	Known RBP eCLIP	33.25	■■■□□ 2.91
TTC3-225	ENST00000540756	CABP1	Q9NZU7	370 aa		33.25	■■■□□ 2.91
TTC3-225	ENST00000540756		A0A1W2PP64	1363 aa		33.25	■■■□□ 2.91
TTC3-225	ENST00000540756	CD163L1	Q9NR16	1453 aa		33.24	■■■□□ 2.91
TTC3-225	ENST00000540756	PPP2R1A	P30153	589 aa		33.23	■■■□□ 2.91
TTC3-225	ENST00000540756	KDM4F	A0A1W2PPD8	638 aa		33.22	■■■□□ 2.91
TTC3-225	ENST00000540756	NINL	Q9Y2I6	1382 aa		33.21	■■■□□ 2.91
TTC3-225	ENST00000540756	NCKAP5L	Q9HCH0	1330 aa		33.21	■■■□□ 2.91
TTC3-225	ENST00000540756	KCNA6	P17658	529 aa		33.21	■■■□□ 2.91
TTC3-225	ENST00000540756	XRN1	Q8IZH2	1706 aa	Known RBP	33.2	■■■□□ 2.91
TTC3-225	ENST00000540756	PTCH1	Q13635	1447 aa		33.18	■■■□□ 2.9
TTC3-225	ENST00000540756	NUDT16	Q96DE0	195 aa	Known RBP	33.16	■■■□□ 2.9
TTC3-225	ENST00000540756	USP32	Q8NFA0	1604 aa		33.15	■■■□□ 2.9
TTC3-225	ENST00000540756	NPHP4	O75161	1426 aa	Predicted RBP	33.15	■■■□□ 2.9
TTC3-225	ENST00000540756	PRR36	Q9H6K5	1346 aa		33.15	■■■□□ 2.9
TTC3-225	ENST00000540756	TERF2IP	Q9NYB0	399 aa		33.14	■■■□□ 2.9
TTC3-225	ENST00000540756	ADGRB2	O60241	1585 aa		33.14	■■■□□ 2.9
TTC3-225	ENST00000540756	CGNL1	Q0VF96	1302 aa		33.14	■■■□□ 2.89
TTC3-225	ENST00000540756	PIK3R4	Q99570	1358 aa		33.13	■■■□□ 2.89
TTC3-225	ENST00000540756	CHD2	O14647	1828 aa	Known RBP	33.13	■■■□□ 2.89
TTC3-225	ENST00000540756	NUTM2F	A1L443	756 aa		33.13	■■■□□ 2.89
TTC3-225	ENST00000540756	PPIP5K1	Q6PFW1	1433 aa		33.11	■■■□□ 2.89
TTC3-225	ENST00000540756	SENP3-EIF4A1	A0A087X0R7	540 aa		33.11	■■■□□ 2.89
TTC3-225	ENST00000540756	TNNT2	P45379	298 aa	Predicted RBP	33.1	■■■□□ 2.89
TTC3-225	ENST00000540756	ATP7B	P35670	1465 aa		33.1	■■■□□ 2.89
TTC3-225	ENST00000540756	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	33.09	■■■□□ 2.89
TTC3-225	ENST00000540756	MORC1	Q86VD1	984 aa		33.09	■■■□□ 2.89
TTC3-225	ENST00000540756	RBM33	Q96EV2	1170 aa	Known RBP	33.07	■■■□□ 2.89
TTC3-225	ENST00000540756	CCDC61	Q9Y6R9	512 aa		33.07	■■■□□ 2.89
TTC3-225	ENST00000540756	HSPA2	P54652	639 aa		33.06	■■■□□ 2.88
TTC3-225	ENST00000540756	GGNBP2	Q9H3C7	697 aa		33.04	■■■□□ 2.88
TTC3-225	ENST00000540756	FYB1	O15117	783 aa		33.02	■■■□□ 2.88
TTC3-225	ENST00000540756	CPSF1	Q10570	1443 aa	Known RBP	33.02	■■■□□ 2.88
TTC3-225	ENST00000540756	SCAF1	Q9H7N4	1312 aa	Known RBP	33.01	■■■□□ 2.88
TTC3-225	ENST00000540756	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	33.01	■■■□□ 2.87	7e-7	■■■■■ 27.2
TTC3-225	ENST00000540756	CDC42BPG	Q6DT37	1551 aa		32.99	■■■□□ 2.87
TTC3-225	ENST00000540756	NSD2	O96028	1365 aa		32.99	■■■□□ 2.87
TTC3-225	ENST00000540756	RGPD8	O14715	1765 aa	Predicted RBP	32.98	■■■□□ 2.87
TTC3-225	ENST00000540756	TOPAZ1	Q8N9V7	1692 aa		32.97	■■■□□ 2.87
TTC3-225	ENST00000540756	GTF3C3	Q9Y5Q9	886 aa		32.96	■■■□□ 2.87
TTC3-225	ENST00000540756	KIF20B	Q96Q89	1820 aa		32.94	■■■□□ 2.86
TTC3-225	ENST00000540756	ZBED9	Q6R2W3	1325 aa		32.94	■■■□□ 2.86
TTC3-225	ENST00000540756	AKAP12	Q02952	1782 aa		32.94	■■■□□ 2.86
TTC3-225	ENST00000540756	NKTR	P30414	1462 aa	Known RBP	32.94	■■■□□ 2.86
TTC3-225	ENST00000540756	ADAMTS8	Q9UP79	889 aa		32.94	■■■□□ 2.86
TTC3-225	ENST00000540756	NALCN	Q8IZF0	1738 aa		32.93	■■■□□ 2.86
TTC3-225	ENST00000540756	ITSN1	Q15811	1721 aa		32.93	■■■□□ 2.86
TTC3-225	ENST00000540756	MON2	Q7Z3U7	1717 aa		32.92	■■■□□ 2.86
TTC3-225	ENST00000540756	ANKRD26	Q9UPS8	1709 aa		32.92	■■■□□ 2.86
TTC3-225	ENST00000540756	ACE	P12821	1306 aa		32.9	■■■□□ 2.86
TTC3-225	ENST00000540756	MTHFS	P49914	203 aa		32.9	■■■□□ 2.86
TTC3-225	ENST00000540756	LMTK3	Q96Q04	1460 aa		32.89	■■■□□ 2.86
TTC3-225	ENST00000540756	EDC4	Q6P2E9	1401 aa	Known RBP	32.89	■■■□□ 2.86
TTC3-225	ENST00000540756	PLEKHG3	A1L390	1219 aa		32.89	■■■□□ 2.86
TTC3-225	ENST00000540756	PMFBP1	Q8TBY8	1022 aa		32.89	■■■□□ 2.86
TTC3-225	ENST00000540756	NME9	Q86XW9	330 aa		32.88	■■■□□ 2.85
TTC3-225	ENST00000540756	ZRANB1	Q9UGI0	708 aa		32.88	■■■□□ 2.85
TTC3-225	ENST00000540756	WDR43	Q15061	677 aa	Known RBP eCLIP	32.86	■■■□□ 2.85
TTC3-225	ENST00000540756	FMN2	Q9NZ56	1722 aa		32.86	■■■□□ 2.85
TTC3-225	ENST00000540756	FBLN1	P23142	703 aa		32.85	■■■□□ 2.85
TTC3-225	ENST00000540756	POLR3A	O14802	1390 aa	Predicted RBP	32.85	■■■□□ 2.85
TTC3-225	ENST00000540756	NWD1	Q149M9	1564 aa		32.85	■■■□□ 2.85
TTC3-225	ENST00000540756	ZNF692	Q9BU19	519 aa	Predicted RBP	32.84	■■■□□ 2.85
TTC3-225	ENST00000540756	BLM	P54132	1417 aa	Predicted RBP	32.84	■■■□□ 2.85
TTC3-225	ENST00000540756	SALL2	Q9Y467	1007 aa	Predicted RBP	32.84	■■■□□ 2.85
TTC3-225	ENST00000540756	ADGRL3	Q9HAR2	1447 aa		32.8	■■■□□ 2.84
TTC3-225	ENST00000540756	STRCP1	A6NGW2	1772 aa		32.79	■■■□□ 2.84
TTC3-225	ENST00000540756	SHPRH	Q149N8	1683 aa		32.79	■■■□□ 2.84
TTC3-225	ENST00000540756	NRK	Q7Z2Y5	1582 aa		32.78	■■■□□ 2.84

Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms