RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 SPATA31E1Q6ZUB1 1445 aa10.74□□□□□ -0.69
LMO3-220ENST00000539232 NEXMIFQ5QGS0 1516 aa10.73□□□□□ -0.69
LMO3-220ENST00000539232 ANKRD30BQ9BXX2 1392 aa10.72□□□□□ -0.69
LMO3-220ENST00000539232 CCDC144AA2RUR9 1427 aa10.7□□□□□ -0.7
LMO3-220ENST00000539232 DCCP43146 1447 aa10.7□□□□□ -0.7
LMO3-220ENST00000539232 PTCH1Q13635 1447 aa10.7□□□□□ -0.7
LMO3-220ENST00000539232 NRXN3Q9Y4C0 1643 aa10.69□□□□□ -0.7
LMO3-220ENST00000539232 ROBO2Q9HCK4 1378 aa10.69□□□□□ -0.7
LMO3-220ENST00000539232 RPGRIP1LQ68CZ1 1315 aa10.69□□□□□ -0.7
LMO3-220ENST00000539232 DCAF8L1A6NGE4 600 aa10.69□□□□□ -0.7
LMO3-220ENST00000539232 VGFO15240 615 aaPredicted RBP10.69□□□□□ -0.7
LMO3-220ENST00000539232 TMEM132EQ6IEE7 984 aa10.69□□□□□ -0.7
LMO3-220ENST00000539232 MYO5BQ9ULV0 1848 aa10.69□□□□□ -0.7
LMO3-220ENST00000539232 SPHKAPQ2M3C7 1700 aa10.69□□□□□ -0.7
LMO3-220ENST00000539232 GJD4Q96KN9 370 aaPredicted RBP10.68□□□□□ -0.7
LMO3-220ENST00000539232 PIK3R4Q99570 1358 aa10.67□□□□□ -0.7
LMO3-220ENST00000539232 STK26Q9P289 416 aa10.67□□□□□ -0.7
LMO3-220ENST00000539232 BRWD3Q6RI45 1802 aa10.66□□□□□ -0.7
LMO3-220ENST00000539232 BAG6P46379 1132 aa10.66□□□□□ -0.7
LMO3-220ENST00000539232 C1QTNF8P60827 252 aa10.66□□□□□ -0.7
LMO3-220ENST00000539232 CFAP70Q5T0N1 1121 aa10.66□□□□□ -0.7
LMO3-220ENST00000539232 MST1RQ04912 1400 aa10.66□□□□□ -0.7
LMO3-220ENST00000539232 WAPLQ7Z5K2 1190 aa10.65□□□□□ -0.7
LMO3-220ENST00000539232 ZNF784Q8NCA9 323 aaPredicted RBP10.65□□□□□ -0.7
LMO3-220ENST00000539232 DDX17Q92841 729 aaKnown RBP10.65□□□□□ -0.7
LMO3-220ENST00000539232 KDM2AQ9Y2K7 1162 aa10.65□□□□□ -0.7
LMO3-220ENST00000539232 DHX57Q6P158 1386 aaKnown RBP10.65□□□□□ -0.71
LMO3-220ENST00000539232 PLEKHH1Q9ULM0 1364 aa10.65□□□□□ -0.71
LMO3-220ENST00000539232 R3HDM1Q15032 1099 aaKnown RBP10.64□□□□□ -0.71
LMO3-220ENST00000539232 SIN3AQ96ST3 1273 aa10.63□□□□□ -0.71
LMO3-220ENST00000539232 C14orf93Q9H972 538 aaKnown RBP10.63□□□□□ -0.71
LMO3-220ENST00000539232 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.62□□□□□ -0.71
LMO3-220ENST00000539232 PIK3C2GO75747 1445 aa10.62□□□□□ -0.71
LMO3-220ENST00000539232 DCAF11Q8TEB1 546 aa10.62□□□□□ -0.71
LMO3-220ENST00000539232 MARF1Q9Y4F3 1742 aaKnown RBP10.61□□□□□ -0.71
LMO3-220ENST00000539232 LAMC1P11047 1609 aa10.61□□□□□ -0.71
LMO3-220ENST00000539232 COL22A1Q8NFW1 1626 aaPredicted RBP10.61□□□□□ -0.71
LMO3-220ENST00000539232 RALGAPBQ86X10 1494 aa10.61□□□□□ -0.71
LMO3-220ENST00000539232 GLI3P10071 1580 aa10.6□□□□□ -0.71
LMO3-220ENST00000539232 ORAI2Q96SN7 254 aa10.6□□□□□ -0.71
LMO3-220ENST00000539232 XRN1Q8IZH2 1706 aaKnown RBP10.6□□□□□ -0.71
LMO3-220ENST00000539232 LRPPRCP42704 1394 aaKnown RBP10.6□□□□□ -0.71
LMO3-220ENST00000539232 NRXN1Q9ULB1 1477 aa10.6□□□□□ -0.71
LMO3-220ENST00000539232 ADGRL3Q9HAR2 1447 aa10.59□□□□□ -0.71
LMO3-220ENST00000539232 NUTM2FA1L443 756 aa10.59□□□□□ -0.71
LMO3-220ENST00000539232 SOS2Q07890 1332 aaPredicted RBP10.58□□□□□ -0.71
LMO3-220ENST00000539232 ACIN1Q9UKV3 1341 aaKnown RBP10.58□□□□□ -0.71
LMO3-220ENST00000539232 CEP350Q5VT06 3117 aa10.58□□□□□ -0.72
LMO3-220ENST00000539232 ABCC11Q96J66 1382 aa10.58□□□□□ -0.72
LMO3-220ENST00000539232 NINLQ9Y2I6 1382 aa10.58□□□□□ -0.72
LMO3-220ENST00000539232 SAFB2Q14151 953 aaKnown RBP eCLIP10.58□□□□□ -0.72
LMO3-220ENST00000539232 SEPT12Q8IYM1 358 aa10.58□□□□□ -0.72
LMO3-220ENST00000539232 MYOM2P54296 1465 aa10.57□□□□□ -0.72
LMO3-220ENST00000539232 EN1Q05925 392 aaPredicted RBP10.57□□□□□ -0.72
LMO3-220ENST00000539232 NBPF1Q3BBV0 1214 aa10.57□□□□□ -0.72
LMO3-220ENST00000539232 KRT27Q7Z3Y8 459 aa10.57□□□□□ -0.72
LMO3-220ENST00000539232 UNC5CLQ8IV45 518 aa10.57□□□□□ -0.72
LMO3-220ENST00000539232 YTHDC2Q9H6S0 1430 aaKnown RBP10.57□□□□□ -0.72
LMO3-220ENST00000539232 NEUROD1Q13562 356 aa10.56□□□□□ -0.72
LMO3-220ENST00000539232 L3MBTL2Q969R5 705 aa10.56□□□□□ -0.72
LMO3-220ENST00000539232 TRAK1Q9UPV9 953 aa10.56□□□□□ -0.72
LMO3-220ENST00000539232 TECPR2O15040 1411 aa10.56□□□□□ -0.72
LMO3-220ENST00000539232 PRAG1Q86YV5 1406 aa10.56□□□□□ -0.72
LMO3-220ENST00000539232 RGPD1P0DJD0 1748 aa10.55□□□□□ -0.72
LMO3-220ENST00000539232 C1orf167Q5SNV9 1468 aa10.55□□□□□ -0.72
LMO3-220ENST00000539232 MYT1Q01538 1121 aa10.55□□□□□ -0.72
LMO3-220ENST00000539232 TRIM26Q12899 539 aaPredicted RBP10.55□□□□□ -0.72
LMO3-220ENST00000539232 PRAM1Q96QH2 718 aa10.55□□□□□ -0.72
LMO3-220ENST00000539232 PPP1R1BQ9UD71 204 aaPredicted RBP10.55□□□□□ -0.72
LMO3-220ENST00000539232 PPLO60437 1756 aa10.54□□□□□ -0.72
LMO3-220ENST00000539232 CHD4Q14839 1912 aa10.54□□□□□ -0.72
LMO3-220ENST00000539232 DISP2A7MBM2 1401 aa10.54□□□□□ -0.72
LMO3-220ENST00000539232 ONECUT3O60422 494 aaPredicted RBP10.54□□□□□ -0.72
LMO3-220ENST00000539232 XPCQ01831 940 aaPredicted RBP10.54□□□□□ -0.72
LMO3-220ENST00000539232 KIF1BO60333 1816 aa10.54□□□□□ -0.72
LMO3-220ENST00000539232 SLIT2O94813 1529 aa10.53□□□□□ -0.72
LMO3-220ENST00000539232 HIRIP3Q9BW71 556 aaPredicted RBP10.53□□□□□ -0.72
LMO3-220ENST00000539232 CAMTA1Q9Y6Y1 1673 aa10.53□□□□□ -0.72
LMO3-220ENST00000539232 ADGRB1O14514 1584 aa10.52□□□□□ -0.72
LMO3-220ENST00000539232 NBPF8Q3BBV2 869 aa10.51□□□□□ -0.73
LMO3-220ENST00000539232 ESCO1Q5FWF5 840 aa10.51□□□□□ -0.73
LMO3-220ENST00000539232 SIRT1Q96EB6 747 aa10.51□□□□□ -0.73
LMO3-220ENST00000539232 SPON1Q9HCB6 807 aa10.51□□□□□ -0.73
LMO3-220ENST00000539232 MINK1Q8N4C8 1332 aaPredicted RBP10.51□□□□□ -0.73
LMO3-220ENST00000539232 FOXO3O43524 673 aa10.5□□□□□ -0.73
LMO3-220ENST00000539232 PRR36Q9H6K5 1346 aa10.5□□□□□ -0.73
LMO3-220ENST00000539232 VPS72Q15906 364 aa10.49□□□□□ -0.73
LMO3-220ENST00000539232 EZH2Q15910 746 aaKnown RBP10.49□□□□□ -0.73
LMO3-220ENST00000539232 POGKQ9P215 609 aa10.49□□□□□ -0.73
LMO3-220ENST00000539232 NALCNQ8IZF0 1738 aa10.49□□□□□ -0.73
LMO3-220ENST00000539232 IFT172Q9UG01 1749 aa10.49□□□□□ -0.73
LMO3-220ENST00000539232 TNS1Q9HBL0 1735 aaKnown RBP10.48□□□□□ -0.73
LMO3-220ENST00000539232 KCNQ2O43526 872 aa10.48□□□□□ -0.73
LMO3-220ENST00000539232 GIGYF1O75420 1035 aaPredicted RBP10.48□□□□□ -0.73
LMO3-220ENST00000539232 CAMKK2Q96RR4 588 aa10.47□□□□□ -0.73
LMO3-220ENST00000539232 PARD3Q8TEW0 1356 aa10.47□□□□□ -0.73
LMO3-220ENST00000539232 PMFBP1Q8TBY8 1022 aa10.46□□□□□ -0.73
LMO3-220ENST00000539232 PCGF6Q9BYE7 350 aa10.46□□□□□ -0.73
LMO3-220ENST00000539232 NPHP3Q7Z494 1330 aa10.46□□□□□ -0.73
LMO3-220ENST00000539232 ADGRB2O60241 1585 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms