RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 POTEB3A0JP26 581 aa10.17□□□□□ -0.78
PRKDC-208ENST00000536710 ATP6V1AP38606 617 aa10.17□□□□□ -0.78
PRKDC-208ENST00000536710 ABL2P42684 1182 aa10.17□□□□□ -0.78
PRKDC-208ENST00000536710 LSM11P83369 360 aaKnown RBP eCLIP10.17□□□□□ -0.78
PRKDC-208ENST00000536710 POTEBQ6S5H4 581 aa10.17□□□□□ -0.78
PRKDC-208ENST00000536710 FNBP4Q8N3X1 1017 aaPredicted RBP10.17□□□□□ -0.78
PRKDC-208ENST00000536710 CCDC82Q8N4S0 544 aa10.17□□□□□ -0.78
PRKDC-208ENST00000536710 ZNF330Q9Y3S2 320 aaPredicted RBP10.17□□□□□ -0.78
PRKDC-208ENST00000536710 GOLGA8CPA6NN73 597 aa10.16□□□□□ -0.78
PRKDC-208ENST00000536710 HELBQ8NG08 1087 aaPredicted RBP10.16□□□□□ -0.78
PRKDC-208ENST00000536710 NECTIN2Q92692 538 aa10.16□□□□□ -0.78
PRKDC-208ENST00000536710 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.16□□□□□ -0.78
PRKDC-208ENST00000536710 CTDSPL2Q05D32 466 aa10.14□□□□□ -0.79
PRKDC-208ENST00000536710 ANKRD13DQ6ZTN6 518 aa10.14□□□□□ -0.79
PRKDC-208ENST00000536710 TBC1D2BQ9UPU7 963 aa10.14□□□□□ -0.79
PRKDC-208ENST00000536710 PUS10Q3MIT2 529 aaKnown RBP10.13□□□□□ -0.79
PRKDC-208ENST00000536710 SYMPKQ92797 1274 aaKnown RBP10.13□□□□□ -0.79
PRKDC-208ENST00000536710 CCDC97Q96F63 343 aaPredicted RBP10.13□□□□□ -0.79
PRKDC-208ENST00000536710 ANKK1Q8NFD2 765 aa10.12□□□□□ -0.79
PRKDC-208ENST00000536710 CFAP99D6REC4 459 aa10.11□□□□□ -0.79
PRKDC-208ENST00000536710 SOCS7O14512 581 aa10.11□□□□□ -0.79
PRKDC-208ENST00000536710 PRR14Q9BWN1 585 aa10.11□□□□□ -0.79
PRKDC-208ENST00000536710 ACTN4O43707 911 aaKnown RBP10.1□□□□□ -0.79
PRKDC-208ENST00000536710 PPP4CP60510 307 aa10.1□□□□□ -0.79
PRKDC-208ENST00000536710 NDUFB9Q9Y6M9 179 aa10.1□□□□□ -0.79
PRKDC-208ENST00000536710 PRR7Q8TB68 274 aa10.09□□□□□ -0.79
PRKDC-208ENST00000536710 LRRN4Q8WUT4 740 aa10.09□□□□□ -0.79
PRKDC-208ENST00000536710 HMX1Q9NP08 348 aaPredicted RBP10.09□□□□□ -0.79
PRKDC-208ENST00000536710 HRO43593 1189 aa10.08□□□□□ -0.8
PRKDC-208ENST00000536710 Q3C1V9 767 aa10.08□□□□□ -0.8
PRKDC-208ENST00000536710 MORN1Q5T089 497 aa10.08□□□□□ -0.8
PRKDC-208ENST00000536710 SERPINA10Q9UK55 444 aa10.08□□□□□ -0.8
PRKDC-208ENST00000536710 HPS5Q9UPZ3 1129 aa10.08□□□□□ -0.8
PRKDC-208ENST00000536710 SLC27A5Q9Y2P5 690 aa10.08□□□□□ -0.8
PRKDC-208ENST00000536710 BCAMP50895 628 aa10.07□□□□□ -0.8
PRKDC-208ENST00000536710 GJD4Q96KN9 370 aaPredicted RBP10.07□□□□□ -0.8
PRKDC-208ENST00000536710 RETREG3Q86VR2 466 aa10.06□□□□□ -0.8
PRKDC-208ENST00000536710 WNT2BQ93097 391 aa10.06□□□□□ -0.8
PRKDC-208ENST00000536710 PLSCR2Q9NRY7 297 aa10.06□□□□□ -0.8
PRKDC-208ENST00000536710 SOWAHBA6NEL2 793 aa10.05□□□□□ -0.8
PRKDC-208ENST00000536710 CALR3Q96L12 384 aaKnown RBP10.05□□□□□ -0.8
PRKDC-208ENST00000536710 POM121CA8CG34 1229 aa10.04□□□□□ -0.8
PRKDC-208ENST00000536710 LCE2DQ5TA82 110 aaPredicted RBP10.04□□□□□ -0.8
PRKDC-208ENST00000536710 TRIM34Q9BYJ4 488 aa10.04□□□□□ -0.8
PRKDC-208ENST00000536710 TSR3Q9UJK0 312 aaKnown RBP10.04□□□□□ -0.8
PRKDC-208ENST00000536710 APLP1P51693 650 aa10.03□□□□□ -0.8
PRKDC-208ENST00000536710 PCDHB3Q9Y5E6 796 aa10.03□□□□□ -0.8
PRKDC-208ENST00000536710 BLOC1S3Q6QNY0 202 aa10.02□□□□□ -0.81
PRKDC-208ENST00000536710 RNF19BQ6ZMZ0 732 aa10.02□□□□□ -0.81
PRKDC-208ENST00000536710 PER1O15534 1290 aaPredicted RBP10.01□□□□□ -0.81
PRKDC-208ENST00000536710 NR6A1Q15406 480 aa10.01□□□□□ -0.81
PRKDC-208ENST00000536710 WASHC4Q2M389 1173 aa10.01□□□□□ -0.81
PRKDC-208ENST00000536710 EPS8L1Q8TE68 723 aa10.01□□□□□ -0.81
PRKDC-208ENST00000536710 GLMNQ92990 594 aa10.01□□□□□ -0.81
PRKDC-208ENST00000536710 NR1I2O75469 434 aa10□□□□□ -0.81
PRKDC-208ENST00000536710 IRF5Q13568 498 aa10□□□□□ -0.81
PRKDC-208ENST00000536710 USB1Q9BQ65 265 aaKnown RBP10□□□□□ -0.81
PRKDC-208ENST00000536710 FMNL1O95466 1100 aaPredicted RBP9.99□□□□□ -0.81
PRKDC-208ENST00000536710 SCUBE3Q8IX30 993 aa9.99□□□□□ -0.81
PRKDC-208ENST00000536710 VAC14Q08AM6 782 aa9.98□□□□□ -0.81
PRKDC-208ENST00000536710 DESI1Q6ICB0 168 aa9.97□□□□□ -0.81
PRKDC-208ENST00000536710 BRICD5Q6PL45 260 aa9.97□□□□□ -0.81
PRKDC-208ENST00000536710 WBP1LQ9NX94 342 aa9.97□□□□□ -0.81
PRKDC-208ENST00000536710 HDGFL1Q5TGJ6 251 aa9.96□□□□□ -0.82
PRKDC-208ENST00000536710 PNMA1Q8ND90 353 aa9.96□□□□□ -0.82
PRKDC-208ENST00000536710 GPR37L1O60883 481 aa9.95□□□□□ -0.82
PRKDC-208ENST00000536710 LYPD8Q6UX82 237 aa9.95□□□□□ -0.82
PRKDC-208ENST00000536710 SALL2Q9Y467 1007 aaPredicted RBP9.95□□□□□ -0.82
PRKDC-208ENST00000536710 PDIA4P13667 645 aaKnown RBP9.94□□□□□ -0.82
PRKDC-208ENST00000536710 COPS2P61201 443 aa9.94□□□□□ -0.82
PRKDC-208ENST00000536710 KCTD12Q96CX2 325 aaKnown RBP9.94□□□□□ -0.82
PRKDC-208ENST00000536710 THAP11Q96EK4 314 aa9.92□□□□□ -0.82
PRKDC-208ENST00000536710 JUNDP17535 347 aa9.91□□□□□ -0.82
PRKDC-208ENST00000536710 CTHP32929 405 aa9.91□□□□□ -0.82
PRKDC-208ENST00000536710 THSD4Q6ZMP0 1018 aa9.91□□□□□ -0.82
PRKDC-208ENST00000536710 ADAMTS19Q8TE59 1207 aa9.91□□□□□ -0.82
PRKDC-208ENST00000536710 SPSB2Q99619 263 aa9.9□□□□□ -0.82
PRKDC-208ENST00000536710 KRTAP3-3Q9BYR6 98 aa9.9□□□□□ -0.82
PRKDC-208ENST00000536710 KRTAP3-2Q9BYR7 98 aa9.9□□□□□ -0.82
PRKDC-208ENST00000536710 SEMA3FQ13275 785 aa9.89□□□□□ -0.83
PRKDC-208ENST00000536710 MAP10Q9P2G4 905 aa9.89□□□□□ -0.83
PRKDC-208ENST00000536710 RFX1P22670 979 aa9.88□□□□□ -0.83
PRKDC-208ENST00000536710 PTPRNQ16849 979 aa9.88□□□□□ -0.83
PRKDC-208ENST00000536710 SOX11P35716 441 aa9.87□□□□□ -0.83
PRKDC-208ENST00000536710 EIF4G2P78344 907 aaKnown RBP eCLIP9.87□□□□□ -0.83
PRKDC-208ENST00000536710 ALG2Q9H553 416 aa9.87□□□□□ -0.83
PRKDC-208ENST00000536710 FKBPLQ9UIM3 349 aa9.87□□□□□ -0.83
PRKDC-208ENST00000536710 PTPN5P54829 565 aa9.86□□□□□ -0.83
PRKDC-208ENST00000536710 MSS51Q4VC12 460 aa9.86□□□□□ -0.83
PRKDC-208ENST00000536710 ACIN1Q9UKV3 1341 aaKnown RBP9.85□□□□□ -0.83
PRKDC-208ENST00000536710 F12P00748 615 aaPredicted RBP9.85□□□□□ -0.83
PRKDC-208ENST00000536710 CCNYL3P0C7X3 344 aa9.85□□□□□ -0.83
PRKDC-208ENST00000536710 NR1H3Q13133 447 aa9.85□□□□□ -0.83
PRKDC-208ENST00000536710 NYAP1Q6ZVC0 841 aa9.85□□□□□ -0.83
PRKDC-208ENST00000536710 FAM160A2Q8N612 972 aaPredicted RBP9.85□□□□□ -0.83
PRKDC-208ENST00000536710 NUDT12Q9BQG2 462 aa9.85□□□□□ -0.83
PRKDC-208ENST00000536710 PRDM9Q9NQV7 894 aa9.85□□□□□ -0.83
PRKDC-208ENST00000536710 ZBBXA8MT70 800 aa9.84□□□□□ -0.83
PRKDC-208ENST00000536710 TLL1O43897 1013 aa9.84□□□□□ -0.83
PRKDC-208ENST00000536710 PPP1R15AO75807 674 aaPredicted RBP9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms