RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 KMT5BQ4FZB7 885 aa8.67□□□□□ -1.02
CD44-220ENST00000525688 FAM163AQ96GL9 167 aaPredicted RBP8.67□□□□□ -1.02
CD44-220ENST00000525688 GJD4Q96KN9 370 aaPredicted RBP8.67□□□□□ -1.02
CD44-220ENST00000525688 LSM11P83369 360 aaKnown RBP eCLIP8.66□□□□□ -1.02
CD44-220ENST00000525688 WWC1Q8IX03 1113 aa8.66□□□□□ -1.02
CD44-220ENST00000525688 ZNF330Q9Y3S2 320 aaPredicted RBP8.66□□□□□ -1.02
CD44-220ENST00000525688 ACTN4O43707 911 aaKnown RBP8.65□□□□□ -1.02
CD44-220ENST00000525688 CTDSPL2Q05D32 466 aa8.65□□□□□ -1.02
CD44-220ENST00000525688 HELBQ8NG08 1087 aaPredicted RBP8.65□□□□□ -1.02
CD44-220ENST00000525688 LRCH3Q96II8 777 aa8.65□□□□□ -1.02
CD44-220ENST00000525688 PLSCR2Q9NRY7 297 aa8.65□□□□□ -1.02
CD44-220ENST00000525688 SERPINA10Q9UK55 444 aa8.65□□□□□ -1.02
CD44-220ENST00000525688 CFAP99D6REC4 459 aa8.64□□□□□ -1.03
CD44-220ENST00000525688 C6orf229H3BNL8 230 aa8.64□□□□□ -1.03
CD44-220ENST00000525688 MORN1Q5T089 497 aa8.64□□□□□ -1.03
CD44-220ENST00000525688 PRR14Q9BWN1 585 aa8.64□□□□□ -1.03
CD44-220ENST00000525688 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.64□□□□□ -1.03
CD44-220ENST00000525688 RNF40O75150 1001 aa8.63□□□□□ -1.03
CD44-220ENST00000525688 LCE2DQ5TA82 110 aaPredicted RBP8.63□□□□□ -1.03
CD44-220ENST00000525688 TBC1D2BQ9UPU7 963 aa8.63□□□□□ -1.03
CD44-220ENST00000525688 NDUFB9Q9Y6M9 179 aa8.63□□□□□ -1.03
CD44-220ENST00000525688 ABL2P42684 1182 aa8.62□□□□□ -1.03
CD44-220ENST00000525688 TRIM34Q9BYJ4 488 aa8.62□□□□□ -1.03
CD44-220ENST00000525688 Q3C1V9 767 aa8.61□□□□□ -1.03
CD44-220ENST00000525688 RETREG3Q86VR2 466 aa8.61□□□□□ -1.03
CD44-220ENST00000525688 HMX1Q9NP08 348 aaPredicted RBP8.61□□□□□ -1.03
CD44-220ENST00000525688 SOWAHBA6NEL2 793 aa8.6□□□□□ -1.03
CD44-220ENST00000525688 DESI1Q6ICB0 168 aa8.6□□□□□ -1.03
CD44-220ENST00000525688 ANKK1Q8NFD2 765 aa8.6□□□□□ -1.03
CD44-220ENST00000525688 PRR7Q8TB68 274 aa8.6□□□□□ -1.03
CD44-220ENST00000525688 CCDC97Q96F63 343 aaPredicted RBP8.6□□□□□ -1.03
CD44-220ENST00000525688 SLC27A5Q9Y2P5 690 aa8.6□□□□□ -1.03
CD44-220ENST00000525688 SALL2Q9Y467 1007 aaPredicted RBP8.6□□□□□ -1.03
CD44-220ENST00000525688 GPR37L1O60883 481 aa8.59□□□□□ -1.03
CD44-220ENST00000525688 IRF5Q13568 498 aa8.59□□□□□ -1.03
CD44-220ENST00000525688 LRRN4Q8WUT4 740 aa8.59□□□□□ -1.03
CD44-220ENST00000525688 SYMPKQ92797 1274 aaKnown RBP8.59□□□□□ -1.03
CD44-220ENST00000525688 PUS10Q3MIT2 529 aaKnown RBP8.58□□□□□ -1.04
CD44-220ENST00000525688 GOLGA8CPA6NN73 597 aa8.57□□□□□ -1.04
CD44-220ENST00000525688 PPP4CP60510 307 aa8.57□□□□□ -1.04
CD44-220ENST00000525688 WASHC4Q2M389 1173 aa8.57□□□□□ -1.04
CD44-220ENST00000525688 TSC1Q92574 1164 aa8.57□□□□□ -1.04
CD44-220ENST00000525688 STAC3Q96MF2 364 aa8.57□□□□□ -1.04
CD44-220ENST00000525688 TSR3Q9UJK0 312 aaKnown RBP8.57□□□□□ -1.04
CD44-220ENST00000525688 ANKRD13DQ6ZTN6 518 aa8.56□□□□□ -1.04
CD44-220ENST00000525688 POM121CA8CG34 1229 aa8.55□□□□□ -1.04
CD44-220ENST00000525688 APLP1P51693 650 aa8.55□□□□□ -1.04
CD44-220ENST00000525688 BRICD5Q6PL45 260 aa8.55□□□□□ -1.04
CD44-220ENST00000525688 HPS5Q9UPZ3 1129 aa8.55□□□□□ -1.04
CD44-220ENST00000525688 PER1O15534 1290 aaPredicted RBP8.54□□□□□ -1.04
CD44-220ENST00000525688 LYPD8Q6UX82 237 aa8.54□□□□□ -1.04
CD44-220ENST00000525688 SCUBE3Q8IX30 993 aa8.54□□□□□ -1.04
CD44-220ENST00000525688 EPS8L1Q8TE68 723 aa8.54□□□□□ -1.04
CD44-220ENST00000525688 GLMNQ92990 594 aa8.54□□□□□ -1.04
CD44-220ENST00000525688 CALR3Q96L12 384 aaKnown RBP8.54□□□□□ -1.04
CD44-220ENST00000525688 USB1Q9BQ65 265 aaKnown RBP8.54□□□□□ -1.04
CD44-220ENST00000525688 BCAMP50895 628 aa8.53□□□□□ -1.04
CD44-220ENST00000525688 RNF19BQ6ZMZ0 732 aa8.53□□□□□ -1.04
CD44-220ENST00000525688 WNT2BQ93097 391 aa8.53□□□□□ -1.04
CD44-220ENST00000525688 THAP11Q96EK4 314 aa8.53□□□□□ -1.04
CD44-220ENST00000525688 NR1I2O75469 434 aa8.52□□□□□ -1.05
CD44-220ENST00000525688 NR6A1Q15406 480 aa8.52□□□□□ -1.05
CD44-220ENST00000525688 BLOC1S3Q6QNY0 202 aa8.52□□□□□ -1.05
CD44-220ENST00000525688 ADAMTS19Q8TE59 1207 aa8.51□□□□□ -1.05
CD44-220ENST00000525688 PCDHB3Q9Y5E6 796 aa8.51□□□□□ -1.05
CD44-220ENST00000525688 FMNL1O95466 1100 aaPredicted RBP8.5□□□□□ -1.05
CD44-220ENST00000525688 HDGFL1Q5TGJ6 251 aa8.5□□□□□ -1.05
CD44-220ENST00000525688 SOX11P35716 441 aa8.49□□□□□ -1.05
CD44-220ENST00000525688 PNMA1Q8ND90 353 aa8.49□□□□□ -1.05
CD44-220ENST00000525688 ALG2Q9H553 416 aa8.49□□□□□ -1.05
CD44-220ENST00000525688 PPP1R15AO75807 674 aaPredicted RBP8.48□□□□□ -1.05
CD44-220ENST00000525688 F12P00748 615 aaPredicted RBP8.48□□□□□ -1.05
CD44-220ENST00000525688 VAC14Q08AM6 782 aa8.48□□□□□ -1.05
CD44-220ENST00000525688 PTPRNQ16849 979 aa8.48□□□□□ -1.05
CD44-220ENST00000525688 MSS51Q4VC12 460 aa8.48□□□□□ -1.05
CD44-220ENST00000525688 WBP1LQ9NX94 342 aa8.48□□□□□ -1.05
CD44-220ENST00000525688 JUNDP17535 347 aa8.47□□□□□ -1.05
CD44-220ENST00000525688 THSD4Q6ZMP0 1018 aa8.47□□□□□ -1.05
CD44-220ENST00000525688 KRTAP3-3Q9BYR6 98 aa8.47□□□□□ -1.05
CD44-220ENST00000525688 KRTAP3-2Q9BYR7 98 aa8.47□□□□□ -1.05
CD44-220ENST00000525688 PDIA4P13667 645 aaKnown RBP8.46□□□□□ -1.06
CD44-220ENST00000525688 NYAP1Q6ZVC0 841 aa8.46□□□□□ -1.06
CD44-220ENST00000525688 ZC3H4Q9UPT8 1303 aaKnown RBP8.45□□□□□ -1.06
CD44-220ENST00000525688 MMP16P51512 607 aa8.44□□□□□ -1.06
CD44-220ENST00000525688 FKBPLQ9UIM3 349 aa8.44□□□□□ -1.06
CD44-220ENST00000525688 DXOO77932 396 aaKnown RBP8.43□□□□□ -1.06
CD44-220ENST00000525688 NR1H3Q13133 447 aa8.43□□□□□ -1.06
CD44-220ENST00000525688 FAM160A2Q8N612 972 aaPredicted RBP8.43□□□□□ -1.06
CD44-220ENST00000525688 SPSB2Q99619 263 aa8.43□□□□□ -1.06
CD44-220ENST00000525688 TRAIPQ9BWF2 469 aa8.43□□□□□ -1.06
CD44-220ENST00000525688 EIF4G2P78344 907 aaKnown RBP eCLIP8.42□□□□□ -1.06
CD44-220ENST00000525688 CFAP70Q5T0N1 1121 aa8.42□□□□□ -1.06
CD44-220ENST00000525688 PPP1R12CQ9BZL4 782 aa8.42□□□□□ -1.06
CD44-220ENST00000525688 EVA1BQ9NVM1 165 aa8.42□□□□□ -1.06
CD44-220ENST00000525688 ZBBXA8MT70 800 aa8.41□□□□□ -1.06
CD44-220ENST00000525688 SRPK2P78362 688 aaKnown RBP8.41□□□□□ -1.06
CD44-220ENST00000525688 TRIM26Q12899 539 aaPredicted RBP8.41□□□□□ -1.06
CD44-220ENST00000525688 SEMA3FQ13275 785 aa8.41□□□□□ -1.06
CD44-220ENST00000525688 PBXIP1Q96AQ6 731 aa8.41□□□□□ -1.06
CD44-220ENST00000525688 MAP10Q9P2G4 905 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms