RNA–Protein interactions for RNA: ENST00000515609.1

TPM3-222, Transcript of tropomyosin 3, humanhuman

TSL 3

Gene TPM3, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-222ENST00000515609 CPS1P31327 1500 aa12.88□□□□□ -0.35
TPM3-222ENST00000515609 TMC1Q8TDI8 760 aa12.87□□□□□ -0.35
TPM3-222ENST00000515609 PTCH1Q13635 1447 aa12.87□□□□□ -0.35
TPM3-222ENST00000515609 PER1O15534 1290 aaPredicted RBP12.86□□□□□ -0.35
TPM3-222ENST00000515609 SLC26A8Q96RN1 970 aa12.86□□□□□ -0.35
TPM3-222ENST00000515609 MINK1Q8N4C8 1332 aaPredicted RBP12.86□□□□□ -0.35
TPM3-222ENST00000515609 MYBBP1AQ9BQG0 1328 aaKnown RBP12.86□□□□□ -0.35
TPM3-222ENST00000515609 SAFB2Q14151 953 aaKnown RBP eCLIP12.85□□□□□ -0.35
TPM3-222ENST00000515609 HDGFL2Q7Z4V5 671 aaPredicted RBP12.85□□□□□ -0.35
TPM3-222ENST00000515609 AMOTL2Q9Y2J4 779 aa12.85□□□□□ -0.35
TPM3-222ENST00000515609 ANKRD36BQ8N2N9 1353 aa12.84□□□□□ -0.35
TPM3-222ENST00000515609 NLRP13Q86W25 1043 aa12.84□□□□□ -0.35
TPM3-222ENST00000515609 CDK19Q9BWU1 502 aa12.84□□□□□ -0.35
TPM3-222ENST00000515609 SENP3Q9H4L4 574 aaPredicted RBP12.84□□□□□ -0.35
TPM3-222ENST00000515609 NPHP4O75161 1426 aaPredicted RBP12.84□□□□□ -0.35
TPM3-222ENST00000515609 CGNL1Q0VF96 1302 aa12.84□□□□□ -0.35
TPM3-222ENST00000515609 TULP4Q9NRJ4 1543 aa12.83□□□□□ -0.35
TPM3-222ENST00000515609 BRD4O60885 1362 aaPredicted RBP12.83□□□□□ -0.36
TPM3-222ENST00000515609 NSD2O96028 1365 aa12.83□□□□□ -0.36
TPM3-222ENST00000515609 WASLO00401 505 aaPredicted RBP12.83□□□□□ -0.36
TPM3-222ENST00000515609 MRS2Q9HD23 443 aa12.83□□□□□ -0.36
TPM3-222ENST00000515609 PARD3Q8TEW0 1356 aa12.82□□□□□ -0.36
TPM3-222ENST00000515609 WAPLQ7Z5K2 1190 aa12.82□□□□□ -0.36
TPM3-222ENST00000515609 MYOM1P52179 1685 aa12.81□□□□□ -0.36
TPM3-222ENST00000515609 CABP2Q9NPB3 220 aa12.81□□□□□ -0.36
TPM3-222ENST00000515609 ADGRB2O60241 1585 aa12.81□□□□□ -0.36
TPM3-222ENST00000515609 ZNF692Q9BU19 519 aaPredicted RBP12.8□□□□□ -0.36
TPM3-222ENST00000515609 SLC12A5Q9H2X9 1139 aa12.8□□□□□ -0.36
TPM3-222ENST00000515609 CCDC61Q9Y6R9 512 aa12.8□□□□□ -0.36
TPM3-222ENST00000515609 ROBO2Q9HCK4 1378 aa12.8□□□□□ -0.36
TPM3-222ENST00000515609 ATP7BP35670 1465 aa12.79□□□□□ -0.36
TPM3-222ENST00000515609 AMER1Q5JTC6 1135 aaPredicted RBP12.79□□□□□ -0.36
TPM3-222ENST00000515609 USP32Q8NFA0 1604 aa12.78□□□□□ -0.36
TPM3-222ENST00000515609 KCNA6P17658 529 aa12.78□□□□□ -0.36
TPM3-222ENST00000515609 CC2D1BQ5T0F9 858 aaKnown RBP12.78□□□□□ -0.36
TPM3-222ENST00000515609 YTHDC1Q96MU7 727 aaKnown RBP12.78□□□□□ -0.36
TPM3-222ENST00000515609 XRN1Q8IZH2 1706 aaKnown RBP12.78□□□□□ -0.36
TPM3-222ENST00000515609 NUDT16Q96DE0 195 aaKnown RBP12.77□□□□□ -0.37
TPM3-222ENST00000515609 PLEKHH1Q9ULM0 1364 aa12.77□□□□□ -0.37
TPM3-222ENST00000515609 KDM4FA0A1W2PPD8 638 aa12.76□□□□□ -0.37
TPM3-222ENST00000515609 ANKARQ7Z5J8 1434 aa12.76□□□□□ -0.37
TPM3-222ENST00000515609 PTPRUQ92729 1446 aa12.76□□□□□ -0.37
TPM3-222ENST00000515609 NSD3Q9BZ95 1437 aa12.76□□□□□ -0.37
TPM3-222ENST00000515609 MORC1Q86VD1 984 aa12.75□□□□□ -0.37
TPM3-222ENST00000515609 CABP1Q9NZU7 370 aa12.75□□□□□ -0.37
TPM3-222ENST00000515609 DMRT2Q9Y5R5 561 aa12.75□□□□□ -0.37
TPM3-222ENST00000515609 CHD2O14647 1828 aaKnown RBP12.74□□□□□ -0.37
TPM3-222ENST00000515609 NKTRP30414 1462 aaKnown RBP12.74□□□□□ -0.37
TPM3-222ENST00000515609 PPIP5K1Q6PFW1 1433 aa12.74□□□□□ -0.37
TPM3-222ENST00000515609 NCOA3Q9Y6Q9 1424 aa12.74□□□□□ -0.37
TPM3-222ENST00000515609 INSRP06213 1382 aa12.74□□□□□ -0.37
TPM3-222ENST00000515609 NCKAP5LQ9HCH0 1330 aa12.74□□□□□ -0.37
TPM3-222ENST00000515609 CNGB1Q14028 1251 aaPredicted RBP12.74□□□□□ -0.37
TPM3-222ENST00000515609 CARD14Q9BXL6 1004 aa12.74□□□□□ -0.37
TPM3-222ENST00000515609 A0A1W2PP64 1363 aa12.73□□□□□ -0.37
TPM3-222ENST00000515609 CFAP53Q96M91 514 aa12.73□□□□□ -0.37
TPM3-222ENST00000515609 EDC4Q6P2E9 1401 aaKnown RBP12.72□□□□□ -0.37
TPM3-222ENST00000515609 PLEKHG3A1L390 1219 aa12.72□□□□□ -0.37
TPM3-222ENST00000515609 C14orf37Q86TY3 774 aa12.72□□□□□ -0.37
TPM3-222ENST00000515609 PPP2R1AP30153 589 aa12.71□□□□□ -0.37
TPM3-222ENST00000515609 FAM9BQ8IZU0 186 aa12.71□□□□□ -0.37
TPM3-222ENST00000515609 NWD1Q149M9 1564 aa12.71□□□□□ -0.37
TPM3-222ENST00000515609 ITSN1Q15811 1721 aa12.71□□□□□ -0.38
TPM3-222ENST00000515609 CPSF1Q10570 1443 aaKnown RBP12.71□□□□□ -0.38
TPM3-222ENST00000515609 CDC42BPGQ6DT37 1551 aa12.7□□□□□ -0.38
TPM3-222ENST00000515609 WDR43Q15061 677 aaKnown RBP eCLIP12.7□□□□□ -0.38
TPM3-222ENST00000515609 PROSER2Q86WR7 435 aaPredicted RBP12.7□□□□□ -0.38
TPM3-222ENST00000515609 PNISRQ8TF01 805 aaKnown RBP12.7□□□□□ -0.38
TPM3-222ENST00000515609 ADGRL3Q9HAR2 1447 aa12.7□□□□□ -0.38
TPM3-222ENST00000515609 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.69□□□□□ -0.38
TPM3-222ENST00000515609 LMTK3Q96Q04 1460 aa12.69□□□□□ -0.38
TPM3-222ENST00000515609 SCAF1Q9H7N4 1312 aaKnown RBP12.68□□□□□ -0.38
TPM3-222ENST00000515609 HNRNPUQ00839 825 aaKnown RBP eCLIP12.68□□□□□ -0.38
TPM3-222ENST00000515609 NGEFQ8N5V2 710 aa12.68□□□□□ -0.38
TPM3-222ENST00000515609 TTC21AQ8NDW8 1320 aa12.67□□□□□ -0.38
TPM3-222ENST00000515609 NGDNQ8NEJ9 315 aaKnown RBP12.67□□□□□ -0.38
TPM3-222ENST00000515609 C19orf44Q9H6X5 657 aa12.67□□□□□ -0.38
TPM3-222ENST00000515609 CD163L1Q9NR16 1453 aa12.66□□□□□ -0.38
TPM3-222ENST00000515609 DCCP43146 1447 aa12.66□□□□□ -0.38
TPM3-222ENST00000515609 FYB1O15117 783 aa12.66□□□□□ -0.38
TPM3-222ENST00000515609 COG3Q96JB2 828 aa12.66□□□□□ -0.38
TPM3-222ENST00000515609 POLR3AO14802 1390 aaPredicted RBP12.66□□□□□ -0.38
TPM3-222ENST00000515609 ACEP12821 1306 aa12.65□□□□□ -0.38
TPM3-222ENST00000515609 ATF3P18847 181 aa12.65□□□□□ -0.38
TPM3-222ENST00000515609 NUDCQ9Y266 331 aa12.65□□□□□ -0.38
TPM3-222ENST00000515609 PRR36Q9H6K5 1346 aa12.64□□□□□ -0.39
TPM3-222ENST00000515609 TOPAZ1Q8N9V7 1692 aa12.64□□□□□ -0.39
TPM3-222ENST00000515609 HSPA2P54652 639 aa12.64□□□□□ -0.39
TPM3-222ENST00000515609 CCDC184Q52MB2 194 aa12.64□□□□□ -0.39
TPM3-222ENST00000515609 CADPS2Q86UW7 1296 aa12.64□□□□□ -0.39
TPM3-222ENST00000515609 PNNQ9H307 717 aaKnown RBP12.64□□□□□ -0.39
TPM3-222ENST00000515609 FMN2Q9NZ56 1722 aa12.64□□□□□ -0.39
TPM3-222ENST00000515609 ZBED9Q6R2W3 1325 aa12.63□□□□□ -0.39
TPM3-222ENST00000515609 ANKRD26Q9UPS8 1709 aa12.63□□□□□ -0.39
TPM3-222ENST00000515609 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.63□□□□□ -0.39
TPM3-222ENST00000515609 USP6P35125 1406 aa12.62□□□□□ -0.39
TPM3-222ENST00000515609 MON2Q7Z3U7 1717 aa12.62□□□□□ -0.39
TPM3-222ENST00000515609 AKAP12Q02952 1782 aa12.62□□□□□ -0.39
TPM3-222ENST00000515609 MSH6P52701 1360 aa12.62□□□□□ -0.39
TPM3-222ENST00000515609 GGNBP2Q9H3C7 697 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms