RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 SEPT9Q9UHD8 586 aaPredicted RBP7.42□□□□□ -1.22
USP53-204ENST00000507906 NUTM2BA6NNL0 878 aaPredicted RBP7.41□□□□□ -1.22
USP53-204ENST00000507906 NUTM2EB1AL46 878 aaPredicted RBP7.41□□□□□ -1.22
USP53-204ENST00000507906 FDX1P10109 184 aa7.41□□□□□ -1.22
USP53-204ENST00000507906 CTDSPL2Q05D32 466 aa7.41□□□□□ -1.22
USP53-204ENST00000507906 NUTM2DQ5VT03 806 aaPredicted RBP7.41□□□□□ -1.22
USP53-204ENST00000507906 NUTM2AQ8IVF1 878 aaPredicted RBP7.41□□□□□ -1.22
USP53-204ENST00000507906 TK2O00142 265 aa7.4□□□□□ -1.22
USP53-204ENST00000507906 PDIA4P13667 645 aaKnown RBP7.4□□□□□ -1.22
USP53-204ENST00000507906 PRPF38BQ5VTL8 546 aaKnown RBP7.4□□□□□ -1.22
USP53-204ENST00000507906 ADAMTS19Q8TE59 1207 aa7.4□□□□□ -1.22
USP53-204ENST00000507906 CCDC97Q96F63 343 aaPredicted RBP7.4□□□□□ -1.22
USP53-204ENST00000507906 TRIM34Q9BYJ4 488 aa7.4□□□□□ -1.22
USP53-204ENST00000507906 VPS9D1Q9Y2B5 631 aa7.4□□□□□ -1.22
USP53-204ENST00000507906 CFAP99D6REC4 459 aa7.38□□□□□ -1.23
USP53-204ENST00000507906 SOCS7O14512 581 aa7.38□□□□□ -1.23
USP53-204ENST00000507906 LRRN4Q8WUT4 740 aa7.38□□□□□ -1.23
USP53-204ENST00000507906 ZBTB3Q9H5J0 574 aa7.38□□□□□ -1.23
USP53-204ENST00000507906 USP46P62068 366 aa7.37□□□□□ -1.23
USP53-204ENST00000507906 EPS8L1Q8TE68 723 aa7.37□□□□□ -1.23
USP53-204ENST00000507906 SYMPKQ92797 1274 aaKnown RBP7.37□□□□□ -1.23
USP53-204ENST00000507906 GLMNQ92990 594 aa7.37□□□□□ -1.23
USP53-204ENST00000507906 FUT2Q10981 343 aa7.36□□□□□ -1.23
USP53-204ENST00000507906 RABGEF1Q9UJ41 708 aa7.36□□□□□ -1.23
USP53-204ENST00000507906 RETREG2Q8NC44 543 aa7.35□□□□□ -1.23
USP53-204ENST00000507906 CALR3Q96L12 384 aaKnown RBP7.35□□□□□ -1.23
USP53-204ENST00000507906 HDGFL1Q5TGJ6 251 aa7.34□□□□□ -1.23
USP53-204ENST00000507906 SAMD7Q7Z3H4 446 aa7.34□□□□□ -1.23
USP53-204ENST00000507906 TRAIPQ9BWF2 469 aa7.34□□□□□ -1.23
USP53-204ENST00000507906 GOLGA8CPA6NN73 597 aa7.33□□□□□ -1.24
USP53-204ENST00000507906 PER1O15534 1290 aaPredicted RBP7.33□□□□□ -1.24
USP53-204ENST00000507906 MTMR2Q13614 643 aa7.33□□□□□ -1.24
USP53-204ENST00000507906 SLC4A5Q9BY07 1137 aa7.33□□□□□ -1.24
USP53-204ENST00000507906 NDUFB9Q9Y6M9 179 aa7.33□□□□□ -1.24
USP53-204ENST00000507906 VAC14Q08AM6 782 aa7.32□□□□□ -1.24
USP53-204ENST00000507906 FAM98CQ17RN3 349 aaKnown RBP7.32□□□□□ -1.24
USP53-204ENST00000507906 MRPL50Q8N5N7 158 aaKnown RBP7.32□□□□□ -1.24
USP53-204ENST00000507906 WNT2BQ93097 391 aa7.32□□□□□ -1.24
USP53-204ENST00000507906 BHMG1C9JSJ3 638 aaPredicted RBP7.31□□□□□ -1.24
USP53-204ENST00000507906 C6orf229H3BNL8 230 aa7.31□□□□□ -1.24
USP53-204ENST00000507906 CFHP08603 1231 aa7.31□□□□□ -1.24
USP53-204ENST00000507906 SRPK2P78362 688 aaKnown RBP7.31□□□□□ -1.24
USP53-204ENST00000507906 RSPH4AQ5TD94 716 aa7.31□□□□□ -1.24
USP53-204ENST00000507906 TSC1Q92574 1164 aa7.31□□□□□ -1.24
USP53-204ENST00000507906 CFAP70Q5T0N1 1121 aa7.3□□□□□ -1.24
USP53-204ENST00000507906 THSD4Q6ZMP0 1018 aa7.3□□□□□ -1.24
USP53-204ENST00000507906 NR6A1Q15406 480 aa7.29□□□□□ -1.24
USP53-204ENST00000507906 PUS10Q3MIT2 529 aaKnown RBP7.29□□□□□ -1.24
USP53-204ENST00000507906 PRR7Q8TB68 274 aa7.29□□□□□ -1.24
USP53-204ENST00000507906 ALG2Q9H553 416 aa7.29□□□□□ -1.24
USP53-204ENST00000507906 PRM3Q9NNZ6 103 aa7.29□□□□□ -1.24
USP53-204ENST00000507906 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.28□□□□□ -1.24
USP53-204ENST00000507906 ZBTB7CA1YPR0 619 aa7.28□□□□□ -1.24
USP53-204ENST00000507906 ATP6V1AP38606 617 aa7.28□□□□□ -1.24
USP53-204ENST00000507906 WWC1Q8IX03 1113 aa7.28□□□□□ -1.24
USP53-204ENST00000507906 CARNS1A5YM72 827 aa7.27□□□□□ -1.25
USP53-204ENST00000507906 RFX1P22670 979 aa7.27□□□□□ -1.25
USP53-204ENST00000507906 MORN1Q5T089 497 aa7.27□□□□□ -1.25
USP53-204ENST00000507906 SLF2Q8IX21 1173 aa7.27□□□□□ -1.25
USP53-204ENST00000507906 ZFRQ96KR1 1074 aaKnown RBP7.27□□□□□ -1.25
USP53-204ENST00000507906 UCN2Q96RP3 112 aa7.27□□□□□ -1.25
USP53-204ENST00000507906 SLC27A5Q9Y2P5 690 aa7.27□□□□□ -1.25
USP53-204ENST00000507906 RNF40O75150 1001 aa7.26□□□□□ -1.25
USP53-204ENST00000507906 PPP1R15AO75807 674 aaPredicted RBP7.26□□□□□ -1.25
USP53-204ENST00000507906 BCAMP50895 628 aa7.26□□□□□ -1.25
USP53-204ENST00000507906 AEBP1Q8IUX7 1158 aa7.26□□□□□ -1.25
USP53-204ENST00000507906 HELBQ8NG08 1087 aaPredicted RBP7.26□□□□□ -1.25
USP53-204ENST00000507906 PPP1R12CQ9BZL4 782 aa7.26□□□□□ -1.25
USP53-204ENST00000507906 NBPF3Q9H094 633 aa7.26□□□□□ -1.25
USP53-204ENST00000507906 HDGFP51858 240 aaKnown RBP7.25□□□□□ -1.25
USP53-204ENST00000507906 WASHC4Q2M389 1173 aa7.25□□□□□ -1.25
USP53-204ENST00000507906 RNF19BQ6ZMZ0 732 aa7.25□□□□□ -1.25
USP53-204ENST00000507906 LAPTM4BQ86VI4 370 aa7.25□□□□□ -1.25
USP53-204ENST00000507906 BLOC1S3Q6QNY0 202 aa7.24□□□□□ -1.25
USP53-204ENST00000507906 PALM3A6NDB9 673 aaPredicted RBP7.23□□□□□ -1.25
USP53-204ENST00000507906 ACTN4O43707 911 aaKnown RBP7.23□□□□□ -1.25
USP53-204ENST00000507906 GRIPAP1Q4V328 841 aa7.23□□□□□ -1.25
USP53-204ENST00000507906 KCTD17Q8N5Z5 321 aa7.23□□□□□ -1.25
USP53-204ENST00000507906 PBXIP1Q96AQ6 731 aa7.23□□□□□ -1.25
USP53-204ENST00000507906 TFIP11Q9UBB9 837 aaKnown RBP7.23□□□□□ -1.25
USP53-204ENST00000507906 RETREG3Q86VR2 466 aa7.22□□□□□ -1.25
USP53-204ENST00000507906 CDCA8Q53HL2 280 aa7.21□□□□□ -1.26
USP53-204ENST00000507906 LYPD8Q6UX82 237 aa7.21□□□□□ -1.26
USP53-204ENST00000507906 ANKK1Q8NFD2 765 aa7.21□□□□□ -1.26
USP53-204ENST00000507906 ACIN1Q9UKV3 1341 aaKnown RBP7.21□□□□□ -1.26
USP53-204ENST00000507906 LMOD1P29536 600 aaPredicted RBP7.2□□□□□ -1.26
USP53-204ENST00000507906 APLP1P51693 650 aa7.2□□□□□ -1.26
USP53-204ENST00000507906 BRICD5Q6PL45 260 aa7.2□□□□□ -1.26
USP53-204ENST00000507906 TBC1D9Q6ZT07 1266 aa7.2□□□□□ -1.26
USP53-204ENST00000507906 THAP11Q96EK4 314 aa7.2□□□□□ -1.26
USP53-204ENST00000507906 KMT5BQ4FZB7 885 aa7.19□□□□□ -1.26
USP53-204ENST00000507906 NPM2Q86SE8 214 aaKnown RBP7.19□□□□□ -1.26
USP53-204ENST00000507906 LRCH3Q96II8 777 aa7.19□□□□□ -1.26
USP53-204ENST00000507906 PIK3CDO00329 1044 aa7.18□□□□□ -1.26
USP53-204ENST00000507906 FBXO45P0C2W1 286 aa7.18□□□□□ -1.26
USP53-204ENST00000507906 SLC4A3P48751 1232 aa7.18□□□□□ -1.26
USP53-204ENST00000507906 DESI1Q6ICB0 168 aa7.18□□□□□ -1.26
USP53-204ENST00000507906 SCUBE3Q8IX30 993 aa7.18□□□□□ -1.26
USP53-204ENST00000507906 GZF1Q9H116 711 aaPredicted RBP7.18□□□□□ -1.26
USP53-204ENST00000507906 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms