RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 A0A0U1RQG5 324 aaPredicted RBP20.13■□□□□ 0.81
PCDHA1-203ENST00000504120 TPM2P07951 284 aa20.13■□□□□ 0.81
PCDHA1-203ENST00000504120 NOL10Q9BSC4 688 aaKnown RBP20.13■□□□□ 0.81
PCDHA1-203ENST00000504120 HMOX1P09601 288 aa20.13■□□□□ 0.81
PCDHA1-203ENST00000504120 LNPKQ9C0E8 428 aa20.12■□□□□ 0.81
PCDHA1-203ENST00000504120 HFM1A2PYH4 1435 aa20.12■□□□□ 0.81
PCDHA1-203ENST00000504120 TRDNQ13061 729 aa20.12■□□□□ 0.81
PCDHA1-203ENST00000504120 C22orf23Q9BZE7 217 aa20.12■□□□□ 0.81
PCDHA1-203ENST00000504120 ADAMTS8Q9UP79 889 aa20.11■□□□□ 0.81
PCDHA1-203ENST00000504120 UNC13AQ9UPW8 1703 aa20.11■□□□□ 0.81
PCDHA1-203ENST00000504120 SUPT6HQ7KZ85 1726 aaKnown RBP20.11■□□□□ 0.81
PCDHA1-203ENST00000504120 CABP2Q9NPB3 220 aa20.11■□□□□ 0.81
PCDHA1-203ENST00000504120 APPP05067 770 aa20.1■□□□□ 0.81
PCDHA1-203ENST00000504120 PANK1Q8TE04 598 aa20.1■□□□□ 0.81
PCDHA1-203ENST00000504120 IQGAP2Q13576 1575 aa20.1■□□□□ 0.81
PCDHA1-203ENST00000504120 FAM69CQ0P6D2 419 aa20.1■□□□□ 0.81
PCDHA1-203ENST00000504120 RAPGEF4Q8WZA2 1011 aa20.09■□□□□ 0.81
PCDHA1-203ENST00000504120 SMC3Q9UQE7 1217 aa20.09■□□□□ 0.81
PCDHA1-203ENST00000504120 C9orf84Q5VXU9 1444 aa20.08■□□□□ 0.81
PCDHA1-203ENST00000504120 CDC45O75419 566 aa20.08■□□□□ 0.81
PCDHA1-203ENST00000504120 TNNT3P45378 269 aaPredicted RBP20.08■□□□□ 0.81
PCDHA1-203ENST00000504120 MTHFSP49914 203 aa20.08■□□□□ 0.81
PCDHA1-203ENST00000504120 BICD2Q8TD16 824 aa20.07■□□□□ 0.8
PCDHA1-203ENST00000504120 BIVM-ERCC5R4GMW8 1640 aa20.07■□□□□ 0.8
PCDHA1-203ENST00000504120 HOOK1Q9UJC3 728 aaKnown RBP20.07■□□□□ 0.8
PCDHA1-203ENST00000504120 TMEM132EQ6IEE7 984 aa20.07■□□□□ 0.8
PCDHA1-203ENST00000504120 MAP3K1Q13233 1512 aa20.06■□□□□ 0.8
PCDHA1-203ENST00000504120 TCP11L2Q8N4U5 519 aa20.06■□□□□ 0.8
PCDHA1-203ENST00000504120 HSP90AA2PQ14568 343 aaPredicted RBP20.06■□□□□ 0.8
PCDHA1-203ENST00000504120 CCDC47Q96A33 483 aaKnown RBP20.06■□□□□ 0.8
PCDHA1-203ENST00000504120 EPRSP07814 1512 aaKnown RBP20.06■□□□□ 0.8
PCDHA1-203ENST00000504120 PPP2R1AP30153 589 aa20.06■□□□□ 0.8
PCDHA1-203ENST00000504120 UBTFL1P0CB47 393 aaPredicted RBP20.05■□□□□ 0.8
PCDHA1-203ENST00000504120 VPS37CA5D8V6 355 aaPredicted RBP20.05■□□□□ 0.8
PCDHA1-203ENST00000504120 VPS37DQ86XT2 251 aa20.05■□□□□ 0.8
PCDHA1-203ENST00000504120 ANKRD20A12PQ8NF67 263 aa20.04■□□□□ 0.8
PCDHA1-203ENST00000504120 SCAPERQ9BY12 1400 aa20.04■□□□□ 0.8
PCDHA1-203ENST00000504120 RIC3Q7Z5B4 369 aa20.04■□□□□ 0.8
PCDHA1-203ENST00000504120 CFAP70Q5T0N1 1121 aa20.04■□□□□ 0.8
PCDHA1-203ENST00000504120 AFAP1Q8N556 730 aa20.04■□□□□ 0.8
PCDHA1-203ENST00000504120 AMER1Q5JTC6 1135 aaPredicted RBP20.03■□□□□ 0.8
PCDHA1-203ENST00000504120 KIAA1107Q9UPP5 1409 aa20.03■□□□□ 0.8
PCDHA1-203ENST00000504120 ERICH2A1L162 156 aa20.03■□□□□ 0.8
PCDHA1-203ENST00000504120 CCDC70Q6NSX1 233 aa20.02■□□□□ 0.8
PCDHA1-203ENST00000504120 NFXL1Q6ZNB6 911 aa20.02■□□□□ 0.8
PCDHA1-203ENST00000504120 DAPK1P53355 1430 aa20.02■□□□□ 0.8
PCDHA1-203ENST00000504120 GNAI3P08754 354 aa20.02■□□□□ 0.8
PCDHA1-203ENST00000504120 SYTL4Q96C24 671 aaPredicted RBP20.02■□□□□ 0.79
PCDHA1-203ENST00000504120 IPO7O95373 1038 aaKnown RBP20.01■□□□□ 0.79
PCDHA1-203ENST00000504120 PDE4CQ08493 712 aa20.01■□□□□ 0.79
PCDHA1-203ENST00000504120 CCAR2Q8N163 923 aaKnown RBP20.01■□□□□ 0.79
PCDHA1-203ENST00000504120 TRIM34Q9BYJ4 488 aa20.01■□□□□ 0.79
PCDHA1-203ENST00000504120 NINLQ9Y2I6 1382 aa20.01■□□□□ 0.79
PCDHA1-203ENST00000504120 MAGI1Q96QZ7 1491 aaPredicted RBP20.01■□□□□ 0.79
PCDHA1-203ENST00000504120 NLRP6P59044 892 aa20.01■□□□□ 0.79
PCDHA1-203ENST00000504120 GAS2L2Q8NHY3 880 aa20.01■□□□□ 0.79
PCDHA1-203ENST00000504120 ATF3P18847 181 aa20■□□□□ 0.79
PCDHA1-203ENST00000504120 GPS2Q13227 327 aa20■□□□□ 0.79
PCDHA1-203ENST00000504120 CCDC30Q5VVM6 783 aa20■□□□□ 0.79
PCDHA1-203ENST00000504120 SASS6Q6UVJ0 657 aa20■□□□□ 0.79
PCDHA1-203ENST00000504120 PCF11O94913 1555 aaKnown RBP19.99■□□□□ 0.79
PCDHA1-203ENST00000504120 PDE3AQ14432 1141 aa19.99■□□□□ 0.79
PCDHA1-203ENST00000504120 CCDC73Q6ZRK6 1079 aa19.99■□□□□ 0.79
PCDHA1-203ENST00000504120 CDCA7LQ96GN5 454 aa19.99■□□□□ 0.79
PCDHA1-203ENST00000504120 NLRP2Q9NX02 1062 aa19.99■□□□□ 0.79
PCDHA1-203ENST00000504120 SAFBQ15424 915 aaKnown RBP eCLIP19.98■□□□□ 0.79
PCDHA1-203ENST00000504120 RALYLQ86SE5 291 aaKnown RBP19.98■□□□□ 0.79
PCDHA1-203ENST00000504120 CNTROBQ8N137 903 aa19.98■□□□□ 0.79
PCDHA1-203ENST00000504120 PSMA5P28066 241 aa19.97■□□□□ 0.79
PCDHA1-203ENST00000504120 AIMP1Q12904 312 aaKnown RBP19.97■□□□□ 0.79
PCDHA1-203ENST00000504120 NEUROD6Q96NK8 337 aa19.97■□□□□ 0.79
PCDHA1-203ENST00000504120 ZNF592Q92610 1267 aa19.97■□□□□ 0.79
PCDHA1-203ENST00000504120 URB2Q14146 1524 aaKnown RBP19.97■□□□□ 0.79
PCDHA1-203ENST00000504120 MSH5O43196 834 aa19.97■□□□□ 0.79
PCDHA1-203ENST00000504120 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.97■□□□□ 0.79
PCDHA1-203ENST00000504120 PRKAR2BP31323 418 aa19.96■□□□□ 0.79
PCDHA1-203ENST00000504120 PCMTD1Q96MG8 357 aaPredicted RBP19.96■□□□□ 0.79
PCDHA1-203ENST00000504120 CLASRPQ8N2M8 674 aaKnown RBP19.96■□□□□ 0.79
PCDHA1-203ENST00000504120 NFKBIBQ15653 356 aa19.96■□□□□ 0.79
PCDHA1-203ENST00000504120 DHX16O60231 1041 aaKnown RBP19.96■□□□□ 0.79
PCDHA1-203ENST00000504120 GRIN2AQ12879 1464 aa19.96■□□□□ 0.79
PCDHA1-203ENST00000504120 CDK13Q14004 1512 aaKnown RBP19.96■□□□□ 0.79
PCDHA1-203ENST00000504120 EXOSC9Q06265 439 aaKnown RBP19.96■□□□□ 0.79
PCDHA1-203ENST00000504120 TCEAL9Q9UHQ7 104 aa19.95■□□□□ 0.78
PCDHA1-203ENST00000504120 GCC1Q96CN9 775 aa19.95■□□□□ 0.78
PCDHA1-203ENST00000504120 RAD21O60216 631 aa19.94■□□□□ 0.78
PCDHA1-203ENST00000504120 NBPF1Q3BBV0 1214 aa19.94■□□□□ 0.78
PCDHA1-203ENST00000504120 GPRASP1Q5JY77 1395 aa19.94■□□□□ 0.78
PCDHA1-203ENST00000504120 WASHC4Q2M389 1173 aa19.94■□□□□ 0.78
PCDHA1-203ENST00000504120 TWISTNBQ3B726 338 aaPredicted RBP19.93■□□□□ 0.78
PCDHA1-203ENST00000504120 NUTM2GQ5VZR2 741 aa19.93■□□□□ 0.78
PCDHA1-203ENST00000504120 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.93■□□□□ 0.78
PCDHA1-203ENST00000504120 CTDP1Q9Y5B0 961 aaPredicted RBP19.93■□□□□ 0.78
PCDHA1-203ENST00000504120 HOMER1Q86YM7 354 aa19.93■□□□□ 0.78
PCDHA1-203ENST00000504120 SURF6O75683 361 aaKnown RBP19.92■□□□□ 0.78
PCDHA1-203ENST00000504120 PDZRN3Q9UPQ7 1066 aa19.92■□□□□ 0.78
PCDHA1-203ENST00000504120 MCM2P49736 904 aa19.92■□□□□ 0.78
PCDHA1-203ENST00000504120 PLEKHO1Q53GL0 409 aaPredicted RBP19.92■□□□□ 0.78
PCDHA1-203ENST00000504120 PRAM1Q96QH2 718 aa19.92■□□□□ 0.78
PCDHA1-203ENST00000504120 FSD1Q9BTV5 496 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms