RNA–Protein interactions for RNA: ENST00000502998.1

CLCN3-203, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-203ENST00000502998 ATP10AO60312 1499 aa8.4□□□□□ -1.06
CLCN3-203ENST00000502998 C9orf84Q5VXU9 1444 aa8.4□□□□□ -1.06
CLCN3-203ENST00000502998 PPP4R3BQ5MIZ7 849 aa8.4□□□□□ -1.06
CLCN3-203ENST00000502998 PREX2Q70Z35 1606 aa8.4□□□□□ -1.07
CLCN3-203ENST00000502998 KDM5CP41229 1560 aa8.39□□□□□ -1.07
CLCN3-203ENST00000502998 ZNF518AQ6AHZ1 1483 aa8.39□□□□□ -1.07
CLCN3-203ENST00000502998 FYCO1Q9BQS8 1478 aa8.39□□□□□ -1.07
CLCN3-203ENST00000502998 TCERG1O14776 1098 aaKnown RBP8.39□□□□□ -1.07
CLCN3-203ENST00000502998 CLCN1P35523 988 aa8.39□□□□□ -1.07
CLCN3-203ENST00000502998 RALBP1Q15311 655 aa8.39□□□□□ -1.07
CLCN3-203ENST00000502998 CCDC27Q2M243 656 aa8.39□□□□□ -1.07
CLCN3-203ENST00000502998 AFAP1Q8N556 730 aa8.39□□□□□ -1.07
CLCN3-203ENST00000502998 CARD10Q9BWT7 1032 aa8.39□□□□□ -1.07
CLCN3-203ENST00000502998 POTEB2H3BUK9 544 aa8.38□□□□□ -1.07
CLCN3-203ENST00000502998 DMTNQ08495 405 aa8.38□□□□□ -1.07
CLCN3-203ENST00000502998 HSP90AB4PQ58FF6 505 aa8.38□□□□□ -1.07
CLCN3-203ENST00000502998 DDRGK1Q96HY6 314 aa8.38□□□□□ -1.07
CLCN3-203ENST00000502998 ABCC1P33527 1531 aa8.38□□□□□ -1.07
CLCN3-203ENST00000502998 PTPRTO14522 1441 aa8.37□□□□□ -1.07
CLCN3-203ENST00000502998 CDC42BPAQ5VT25 1732 aa8.37□□□□□ -1.07
CLCN3-203ENST00000502998 ITSN2Q9NZM3 1697 aa8.37□□□□□ -1.07
CLCN3-203ENST00000502998 DIP2CQ9Y2E4 1556 aa8.37□□□□□ -1.07
CLCN3-203ENST00000502998 PAK3O75914 559 aaPredicted RBP8.37□□□□□ -1.07
CLCN3-203ENST00000502998 SLC52A1Q9NWF4 448 aa8.37□□□□□ -1.07
CLCN3-203ENST00000502998 GEMIN8Q9NWZ8 242 aaKnown RBP8.37□□□□□ -1.07
CLCN3-203ENST00000502998 TRAPPC8Q9Y2L5 1435 aa8.37□□□□□ -1.07
CLCN3-203ENST00000502998 ABCA6Q8N139 1617 aa8.36□□□□□ -1.07
CLCN3-203ENST00000502998 LETM1O95202 739 aaPredicted RBP8.36□□□□□ -1.07
CLCN3-203ENST00000502998 HSP90AB3PQ58FF7 597 aa8.36□□□□□ -1.07
CLCN3-203ENST00000502998 DNTTIP2Q5QJE6 756 aaKnown RBP8.36□□□□□ -1.07
CLCN3-203ENST00000502998 CASC1Q6TDU7 716 aa8.36□□□□□ -1.07
CLCN3-203ENST00000502998 EGFL6Q8IUX8 553 aa8.36□□□□□ -1.07
CLCN3-203ENST00000502998 GTPBP4Q9BZE4 634 aaKnown RBP8.36□□□□□ -1.07
CLCN3-203ENST00000502998 MLH3Q9UHC1 1453 aa8.36□□□□□ -1.07
CLCN3-203ENST00000502998 UHRF1BP1Q6BDS2 1440 aa8.36□□□□□ -1.07
CLCN3-203ENST00000502998 SAMD9LQ8IVG5 1584 aa8.35□□□□□ -1.07
CLCN3-203ENST00000502998 REREQ9P2R6 1566 aa8.35□□□□□ -1.07
CLCN3-203ENST00000502998 NBPF9Q3BBW0 867 aa8.34□□□□□ -1.07
CLCN3-203ENST00000502998 ZNF777Q9ULD5 760 aaPredicted RBP8.34□□□□□ -1.07
CLCN3-203ENST00000502998 GPATCH8Q9UKJ3 1502 aaKnown RBP8.34□□□□□ -1.08
CLCN3-203ENST00000502998 C3P01024 1663 aa8.34□□□□□ -1.08
CLCN3-203ENST00000502998 ZNF335Q9H4Z2 1342 aaPredicted RBP8.33□□□□□ -1.08
CLCN3-203ENST00000502998 KIDINS220Q9ULH0 1771 aa8.33□□□□□ -1.08
CLCN3-203ENST00000502998 POTEMA6NI47 508 aa8.33□□□□□ -1.08
CLCN3-203ENST00000502998 TERF1P54274 439 aa8.33□□□□□ -1.08
CLCN3-203ENST00000502998 NCOA1Q15788 1441 aa8.33□□□□□ -1.08
CLCN3-203ENST00000502998 SYCP2Q9BX26 1530 aa8.33□□□□□ -1.08
CLCN3-203ENST00000502998 PHF12Q96QT6 1004 aa8.32□□□□□ -1.08
CLCN3-203ENST00000502998 SH3BP1Q9Y3L3 701 aa8.32□□□□□ -1.08
CLCN3-203ENST00000502998 AGLP35573 1532 aa8.32□□□□□ -1.08
CLCN3-203ENST00000502998 IQSEC2Q5JU85 1478 aa8.32□□□□□ -1.08
CLCN3-203ENST00000502998 VGLL3A8MV65 326 aa8.31□□□□□ -1.08
CLCN3-203ENST00000502998 SOX12O15370 315 aa8.31□□□□□ -1.08
CLCN3-203ENST00000502998 HNRNPMP52272 730 aaKnown RBP eCLIP8.31□□□□□ -1.08
CLCN3-203ENST00000502998 FAM177A1Q8N128 213 aaPredicted RBP8.31□□□□□ -1.08
CLCN3-203ENST00000502998 MTUS2Q5JR59 1369 aa8.31□□□□□ -1.08
CLCN3-203ENST00000502998 CCNB3Q8WWL7 1395 aa8.31□□□□□ -1.08
CLCN3-203ENST00000502998 NCKAP5LQ9HCH0 1330 aa8.3□□□□□ -1.08
CLCN3-203ENST00000502998 CEP162Q5TB80 1403 aa8.3□□□□□ -1.08
CLCN3-203ENST00000502998 RRAGDQ9NQL2 400 aaPredicted RBP8.3□□□□□ -1.08
CLCN3-203ENST00000502998 CFDP1Q9UEE9 299 aaPredicted RBP8.3□□□□□ -1.08
CLCN3-203ENST00000502998 SPAG9O60271 1321 aaKnown RBP8.29□□□□□ -1.08
CLCN3-203ENST00000502998 KIAA1107Q9UPP5 1409 aa8.29□□□□□ -1.08
CLCN3-203ENST00000502998 EHBP1L1Q8N3D4 1523 aa8.29□□□□□ -1.08
CLCN3-203ENST00000502998 UBAP1LF5GYI3 381 aa8.29□□□□□ -1.08
CLCN3-203ENST00000502998 L1TD1Q5T7N2 865 aaKnown RBP8.29□□□□□ -1.08
CLCN3-203ENST00000502998 POTEGQ6S5H5 508 aa8.29□□□□□ -1.08
CLCN3-203ENST00000502998 EXOC8Q8IYI6 725 aa8.29□□□□□ -1.08
CLCN3-203ENST00000502998 TMTC2Q8N394 836 aa8.29□□□□□ -1.08
CLCN3-203ENST00000502998 RAI14Q9P0K7 980 aa8.29□□□□□ -1.08
CLCN3-203ENST00000502998 PLEKHH2Q8IVE3 1493 aa8.29□□□□□ -1.08
CLCN3-203ENST00000502998 TIAM1Q13009 1591 aa8.29□□□□□ -1.08
CLCN3-203ENST00000502998 ATP7AQ04656 1500 aa8.29□□□□□ -1.08
CLCN3-203ENST00000502998 INO80Q9ULG1 1556 aaPredicted RBP8.28□□□□□ -1.08
CLCN3-203ENST00000502998 NRDCO43847 1150 aa8.28□□□□□ -1.08
CLCN3-203ENST00000502998 HSPA1LP34931 641 aa8.28□□□□□ -1.08
CLCN3-203ENST00000502998 OTUD6BQ8N6M0 293 aa8.28□□□□□ -1.08
CLCN3-203ENST00000502998 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.28□□□□□ -1.08
CLCN3-203ENST00000502998 NECTIN2Q92692 538 aa8.28□□□□□ -1.08
CLCN3-203ENST00000502998 ESF1Q9H501 851 aaKnown RBP8.28□□□□□ -1.08
CLCN3-203ENST00000502998 BSDC1Q9NW68 430 aaPredicted RBP8.28□□□□□ -1.08
CLCN3-203ENST00000502998 ZHX1Q9UKY1 873 aaPredicted RBP8.28□□□□□ -1.08
CLCN3-203ENST00000502998 SUPT6HQ7KZ85 1726 aaKnown RBP8.28□□□□□ -1.08
CLCN3-203ENST00000502998 CAMSAP1Q5T5Y3 1602 aa8.28□□□□□ -1.08
CLCN3-203ENST00000502998 ZNF644Q9H582 1327 aaPredicted RBP8.28□□□□□ -1.08
CLCN3-203ENST00000502998 SSR1P43307 286 aaKnown RBP8.27□□□□□ -1.09
CLCN3-203ENST00000502998 TSPYL1Q9H0U9 437 aa8.27□□□□□ -1.09
CLCN3-203ENST00000502998 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.27□□□□□ -1.09
CLCN3-203ENST00000502998 RBM28Q9NW13 759 aaKnown RBP8.27□□□□□ -1.09
CLCN3-203ENST00000502998 TERF2IPQ9NYB0 399 aa8.27□□□□□ -1.09
CLCN3-203ENST00000502998 PCDH10Q9P2E7 1040 aa8.27□□□□□ -1.09
CLCN3-203ENST00000502998 PLXNC1O60486 1568 aa8.27□□□□□ -1.09
CLCN3-203ENST00000502998 MED1Q15648 1581 aaPredicted RBP8.27□□□□□ -1.09
CLCN3-203ENST00000502998 MNX1P50219 401 aaPredicted RBP8.26□□□□□ -1.09
CLCN3-203ENST00000502998 ASTLQ6HA08 431 aaPredicted RBP8.26□□□□□ -1.09
CLCN3-203ENST00000502998 TSHZ1Q6ZSZ6 1077 aa8.26□□□□□ -1.09
CLCN3-203ENST00000502998 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.26□□□□□ -1.09
CLCN3-203ENST00000502998 CNTLNQ9NXG0 1405 aa8.26□□□□□ -1.09
CLCN3-203ENST00000502998 A2MP01023 1474 aa8.26□□□□□ -1.09
CLCN3-203ENST00000502998 MBD5Q9P267 1494 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms