RNA–Protein interactions for RNA: ENST00000493553.1

PRPF3-206, Transcript of pre-mRNA processing factor 3, humanhuman

TSL 2

Gene PRPF3, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3-206ENST00000493553 VPS9D1Q9Y2B5 631 aa14.34□□□□□ -0.11
PRPF3-206ENST00000493553 PPP1R3GB7ZBB8 358 aa14.33□□□□□ -0.12
PRPF3-206ENST00000493553 NBR1Q14596 966 aa14.33□□□□□ -0.12
PRPF3-206ENST00000493553 RNF166Q96A37 237 aaPredicted RBP14.33□□□□□ -0.12
PRPF3-206ENST00000493553 TRIM52Q96A61 297 aa14.33□□□□□ -0.12
PRPF3-206ENST00000493553 ZBED2Q9BTP6 218 aa14.33□□□□□ -0.12
PRPF3-206ENST00000493553 TONSLQ96HA7 1378 aa14.33□□□□□ -0.12
PRPF3-206ENST00000493553 NCOA1Q15788 1441 aa14.32□□□□□ -0.12
PRPF3-206ENST00000493553 KDM5BQ9UGL1 1544 aa14.32□□□□□ -0.12
PRPF3-206ENST00000493553 ARHGEF5Q12774 1597 aa14.31□□□□□ -0.12
PRPF3-206ENST00000493553 C6orf132Q5T0Z8 1188 aa14.31□□□□□ -0.12
PRPF3-206ENST00000493553 ZNF777Q9ULD5 760 aaPredicted RBP14.31□□□□□ -0.12
PRPF3-206ENST00000493553 EN1Q05925 392 aaPredicted RBP14.3□□□□□ -0.12
PRPF3-206ENST00000493553 ZNF644Q9H582 1327 aaPredicted RBP14.3□□□□□ -0.12
PRPF3-206ENST00000493553 KIAA1107Q9UPP5 1409 aa14.3□□□□□ -0.12
PRPF3-206ENST00000493553 RBM33Q96EV2 1170 aaKnown RBP14.29□□□□□ -0.12
PRPF3-206ENST00000493553 MPHOSPH9Q99550 1183 aa14.29□□□□□ -0.12
PRPF3-206ENST00000493553 GRXCR2A6NFK2 248 aa14.28□□□□□ -0.12
PRPF3-206ENST00000493553 PPP1R15AO75807 674 aaPredicted RBP14.28□□□□□ -0.12
PRPF3-206ENST00000493553 COL9A1P20849 921 aa14.28□□□□□ -0.12
PRPF3-206ENST00000493553 NEUROD1Q13562 356 aa14.28□□□□□ -0.12
PRPF3-206ENST00000493553 ADGBQ8N7X0 1667 aa14.28□□□□□ -0.12
PRPF3-206ENST00000493553 C9orf84Q5VXU9 1444 aa14.27□□□□□ -0.12
PRPF3-206ENST00000493553 EFCAB2Q5VUJ9 269 aa14.27□□□□□ -0.13
PRPF3-206ENST00000493553 CCDC141Q6ZP82 1450 aa14.26□□□□□ -0.13
PRPF3-206ENST00000493553 KDM2AQ9Y2K7 1162 aa14.26□□□□□ -0.13
PRPF3-206ENST00000493553 CDC42BPAQ5VT25 1732 aa14.26□□□□□ -0.13
PRPF3-206ENST00000493553 PREX2Q70Z35 1606 aa14.26□□□□□ -0.13
PRPF3-206ENST00000493553 ARAP3Q8WWN8 1544 aa14.25□□□□□ -0.13
PRPF3-206ENST00000493553 MAP3K7O43318 606 aa14.25□□□□□ -0.13
PRPF3-206ENST00000493553 ANKRD50Q9ULJ7 1429 aa14.24□□□□□ -0.13
PRPF3-206ENST00000493553 CROCC2H7BZ55 1655 aa14.24□□□□□ -0.13
PRPF3-206ENST00000493553 OSBPP22059 807 aa14.24□□□□□ -0.13
PRPF3-206ENST00000493553 SIN3AQ96ST3 1273 aa14.24□□□□□ -0.13
PRPF3-206ENST00000493553 PLCH2O75038 1416 aa14.24□□□□□ -0.13
PRPF3-206ENST00000493553 ERCC6L2Q5T890 1561 aa14.23□□□□□ -0.13
PRPF3-206ENST00000493553 PRIM1P49642 420 aaKnown RBP14.23□□□□□ -0.13
PRPF3-206ENST00000493553 VSIG10Q8N0Z9 540 aa14.23□□□□□ -0.13
PRPF3-206ENST00000493553 STAC3Q96MF2 364 aa14.23□□□□□ -0.13
PRPF3-206ENST00000493553 MBD5Q9P267 1494 aa14.23□□□□□ -0.13
PRPF3-206ENST00000493553 ARHGAP5Q13017 1502 aa14.22□□□□□ -0.13
PRPF3-206ENST00000493553 BHMG1C9JSJ3 638 aaPredicted RBP14.22□□□□□ -0.13
PRPF3-206ENST00000493553 TSR1Q2NL82 804 aaKnown RBP14.21□□□□□ -0.13
PRPF3-206ENST00000493553 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.2□□□□□ -0.14
PRPF3-206ENST00000493553 MAST1Q9Y2H9 1570 aa14.2□□□□□ -0.14
PRPF3-206ENST00000493553 ANKRD30BQ9BXX2 1392 aa14.2□□□□□ -0.14
PRPF3-206ENST00000493553 KIF15Q9NS87 1388 aa14.2□□□□□ -0.14
PRPF3-206ENST00000493553 ZCCHC11Q5TAX3 1644 aaKnown RBP14.19□□□□□ -0.14
PRPF3-206ENST00000493553 ONECUT3O60422 494 aaPredicted RBP14.19□□□□□ -0.14
PRPF3-206ENST00000493553 RABGEF1Q9UJ41 708 aa14.19□□□□□ -0.14
PRPF3-206ENST00000493553 WDR7Q9Y4E6 1490 aa14.18□□□□□ -0.14
PRPF3-206ENST00000493553 HNRNPMP52272 730 aaKnown RBP eCLIP14.18□□□□□ -0.14
PRPF3-206ENST00000493553 PROX2Q3B8N5 592 aa14.18□□□□□ -0.14
PRPF3-206ENST00000493553 MYO5CQ9NQX4 1742 aa14.18□□□□□ -0.14
PRPF3-206ENST00000493553 CENPBP07199 599 aaPredicted RBP14.17□□□□□ -0.14
PRPF3-206ENST00000493553 MLLT3P42568 568 aaPredicted RBP14.17□□□□□ -0.14
PRPF3-206ENST00000493553 NBPF3Q9H094 633 aa14.17□□□□□ -0.14
PRPF3-206ENST00000493553 KDM5DQ9BY66 1539 aa14.16□□□□□ -0.14
PRPF3-206ENST00000493553 CERKQ8TCT0 537 aa14.16□□□□□ -0.14
PRPF3-206ENST00000493553 RPRD2Q5VT52 1461 aaKnown RBP14.16□□□□□ -0.14
PRPF3-206ENST00000493553 SAMD9LQ8IVG5 1584 aa14.16□□□□□ -0.14
PRPF3-206ENST00000493553 TTC37Q6PGP7 1564 aa14.15□□□□□ -0.14
PRPF3-206ENST00000493553 CDC42BPBQ9Y5S2 1711 aa14.15□□□□□ -0.14
PRPF3-206ENST00000493553 RTEL1-TNFRSF6BF6WH68 1400 aa14.15□□□□□ -0.14
PRPF3-206ENST00000493553 NUP155O75694 1391 aa14.14□□□□□ -0.15
PRPF3-206ENST00000493553 TRIM6-TRIM34B2RNG4 842 aa14.14□□□□□ -0.15
PRPF3-206ENST00000493553 MRPL50Q8N5N7 158 aaKnown RBP14.14□□□□□ -0.15
PRPF3-206ENST00000493553 KDM6BO15054 1643 aa14.14□□□□□ -0.15
PRPF3-206ENST00000493553 PZPP20742 1482 aa14.13□□□□□ -0.15
PRPF3-206ENST00000493553 SEMA3EO15041 775 aa14.12□□□□□ -0.15
PRPF3-206ENST00000493553 PLXNC1O60486 1568 aa14.12□□□□□ -0.15
PRPF3-206ENST00000493553 DENND4BO75064 1496 aaPredicted RBP14.12□□□□□ -0.15
PRPF3-206ENST00000493553 SYCP2Q9BX26 1530 aa14.11□□□□□ -0.15
PRPF3-206ENST00000493553 DUOX2Q9NRD8 1548 aa14.11□□□□□ -0.15
PRPF3-206ENST00000493553 ERBINQ96RT1 1412 aa14.11□□□□□ -0.15
PRPF3-206ENST00000493553 KIAA1468Q9P260 1216 aa14.11□□□□□ -0.15
PRPF3-206ENST00000493553 CDHR5Q9HBB8 845 aa14.1□□□□□ -0.15
PRPF3-206ENST00000493553 LAPTM4BQ86VI4 370 aa14.09□□□□□ -0.15
PRPF3-206ENST00000493553 ASXL2Q76L83 1435 aa14.08□□□□□ -0.15
PRPF3-206ENST00000493553 PRSS12P56730 875 aa14.08□□□□□ -0.16
PRPF3-206ENST00000493553 KCTD12Q96CX2 325 aaKnown RBP14.08□□□□□ -0.16
PRPF3-206ENST00000493553 HCSTQ9UBK5 93 aa14.08□□□□□ -0.16
PRPF3-206ENST00000493553 ABCC1P33527 1531 aa14.08□□□□□ -0.16
PRPF3-206ENST00000493553 SPAG9O60271 1321 aaKnown RBP14.08□□□□□ -0.16
PRPF3-206ENST00000493553 ABCA9Q8IUA7 1624 aa14.08□□□□□ -0.16
PRPF3-206ENST00000493553 GOLGA8CPA6NN73 597 aa14.07□□□□□ -0.16
PRPF3-206ENST00000493553 CDCA7LQ96GN5 454 aa14.07□□□□□ -0.16
PRPF3-206ENST00000493553 TSKSQ9UJT2 592 aa14.07□□□□□ -0.16
PRPF3-206ENST00000493553 TESPA1A2RU30 521 aaPredicted RBP14.06□□□□□ -0.16
PRPF3-206ENST00000493553 EIF4G2P78344 907 aaKnown RBP eCLIP14.06□□□□□ -0.16
PRPF3-206ENST00000493553 PACS2Q86VP3 889 aa14.06□□□□□ -0.16
PRPF3-206ENST00000493553 L3MBTL2Q969R5 705 aa14.06□□□□□ -0.16
PRPF3-206ENST00000493553 RBM27Q9P2N5 1060 aaKnown RBP14.06□□□□□ -0.16
PRPF3-206ENST00000493553 NPDC1Q9NQX5 325 aaPredicted RBP14.05□□□□□ -0.16
PRPF3-206ENST00000493553 FANCAO15360 1455 aa14.05□□□□□ -0.16
PRPF3-206ENST00000493553 ARHGEF12Q9NZN5 1544 aa14.04□□□□□ -0.16
PRPF3-206ENST00000493553 WNT2BQ93097 391 aa14.03□□□□□ -0.16
PRPF3-206ENST00000493553 UNC13BO14795 1591 aa14.02□□□□□ -0.16
PRPF3-206ENST00000493553 CFAP74Q9C0B2 1584 aa14.02□□□□□ -0.16
PRPF3-206ENST00000493553 TEX14Q8IWB6 1497 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms