RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 HOMER1Q86YM7 354 aa8.73□□□□□ -1.01
SYNE1-228ENST00000490135 FOXD4L5Q5VV16 416 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-228ENST00000490135 FOXD4L4Q8WXT5 416 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-228ENST00000490135 PRDM4Q9UKN5 801 aa8.73□□□□□ -1.01
SYNE1-228ENST00000490135 MCM5P33992 734 aa8.73□□□□□ -1.01
SYNE1-228ENST00000490135 ZBTB9Q96C00 473 aa8.73□□□□□ -1.01
SYNE1-228ENST00000490135 OGFRQ9NZT2 677 aa8.73□□□□□ -1.01
SYNE1-228ENST00000490135 U2AF1L5P0DN76 240 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-228ENST00000490135 U2AF1Q01081 240 aaKnown RBP eCLIP8.73□□□□□ -1.01
SYNE1-228ENST00000490135 CAVIN1Q6NZI2 390 aaKnown RBP8.73□□□□□ -1.01
SYNE1-228ENST00000490135 LRCH2Q5VUJ6 765 aa8.72□□□□□ -1.01
SYNE1-228ENST00000490135 TTC31Q49AM3 519 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-228ENST00000490135 FBXW7Q969H0 707 aa8.72□□□□□ -1.01
SYNE1-228ENST00000490135 HSP90B2PQ58FF3 399 aa8.72□□□□□ -1.01
SYNE1-228ENST00000490135 ZBTB12Q9Y330 459 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-228ENST00000490135 EPS15P42566 896 aa8.71□□□□□ -1.01
SYNE1-228ENST00000490135 TXLNBQ8N3L3 684 aa8.71□□□□□ -1.01
SYNE1-228ENST00000490135 DRC1Q96MC2 740 aa8.71□□□□□ -1.01
SYNE1-228ENST00000490135 STK26Q9P289 416 aa8.71□□□□□ -1.01
SYNE1-228ENST00000490135 LIG1P18858 919 aa8.71□□□□□ -1.01
SYNE1-228ENST00000490135 SMG6Q86US8 1419 aaKnown RBP8.71□□□□□ -1.01
SYNE1-228ENST00000490135 TSPY26PQ9H489 355 aa8.71□□□□□ -1.02
SYNE1-228ENST00000490135 TMEM132AQ24JP5 1023 aa8.71□□□□□ -1.02
SYNE1-228ENST00000490135 TMX1Q9H3N1 280 aa8.71□□□□□ -1.02
SYNE1-228ENST00000490135 ANKRD18AQ8IVF6 992 aa8.71□□□□□ -1.02
SYNE1-228ENST00000490135 RNF214Q8ND24 703 aa8.71□□□□□ -1.02
SYNE1-228ENST00000490135 KRT222Q8N1A0 295 aa8.7□□□□□ -1.02
SYNE1-228ENST00000490135 SMC4Q9NTJ3 1288 aa8.7□□□□□ -1.02
SYNE1-228ENST00000490135 GOLGA3Q08378 1498 aa8.7□□□□□ -1.02
SYNE1-228ENST00000490135 CCDC112Q8NEF3 446 aa8.7□□□□□ -1.02
SYNE1-228ENST00000490135 MYCNP04198 464 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-228ENST00000490135 PDE3BQ13370 1112 aa8.7□□□□□ -1.02
SYNE1-228ENST00000490135 GABPB1Q06547 395 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-228ENST00000490135 NEFHP12036 1026 aa8.69□□□□□ -1.02
SYNE1-228ENST00000490135 CCDC97Q96F63 343 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-228ENST00000490135 TICAM2Q86XR7 235 aa8.69□□□□□ -1.02
SYNE1-228ENST00000490135 CPLX1O14810 134 aa8.69□□□□□ -1.02
SYNE1-228ENST00000490135 VPS37DQ86XT2 251 aa8.69□□□□□ -1.02
SYNE1-228ENST00000490135 WRNQ14191 1432 aaPredicted RBP eCLIP8.69□□□□□ -1.02
SYNE1-228ENST00000490135 STK11IPQ8N1F8 1099 aa8.69□□□□□ -1.02
SYNE1-228ENST00000490135 A0A1B0GUL7 405 aa8.69□□□□□ -1.02
SYNE1-228ENST00000490135 FEZ1Q99689 392 aa8.69□□□□□ -1.02
SYNE1-228ENST00000490135 ERICH2A1L162 156 aa8.68□□□□□ -1.02
SYNE1-228ENST00000490135 C10orf67Q8IYJ2 551 aa8.68□□□□□ -1.02
SYNE1-228ENST00000490135 ERCC4Q92889 916 aaPredicted RBP8.68□□□□□ -1.02
SYNE1-228ENST00000490135 EFCC1Q9HA90 598 aa8.68□□□□□ -1.02
SYNE1-228ENST00000490135 CAGE1Q8TC20 777 aa8.68□□□□□ -1.02
SYNE1-228ENST00000490135 RSPH14Q9UHP6 348 aa8.68□□□□□ -1.02
SYNE1-228ENST00000490135 RNF20Q5VTR2 975 aa8.67□□□□□ -1.02
SYNE1-228ENST00000490135 RILPL2Q969X0 211 aa8.67□□□□□ -1.02
SYNE1-228ENST00000490135 ANKRD62A6NC57 917 aa8.67□□□□□ -1.02
SYNE1-228ENST00000490135 IRX5P78411 483 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-228ENST00000490135 LOC102724159A0A0B4J2E5 919 aa8.67□□□□□ -1.02
SYNE1-228ENST00000490135 TRDNQ13061 729 aa8.67□□□□□ -1.02
SYNE1-228ENST00000490135 PWP2Q15269 919 aaKnown RBP8.67□□□□□ -1.02
SYNE1-228ENST00000490135 NFXL1Q6ZNB6 911 aa8.67□□□□□ -1.02
SYNE1-228ENST00000490135 DNAAF4Q8WXU2 420 aa8.67□□□□□ -1.02
SYNE1-228ENST00000490135 CCAR1Q8IX12 1150 aaKnown RBP8.67□□□□□ -1.02
SYNE1-228ENST00000490135 EZRP15311 586 aaKnown RBP8.66□□□□□ -1.02
SYNE1-228ENST00000490135 AMPHP49418 695 aa8.66□□□□□ -1.02
SYNE1-228ENST00000490135 C22orf23Q9BZE7 217 aa8.66□□□□□ -1.02
SYNE1-228ENST00000490135 SEPT7Q16181 437 aaKnown RBP8.66□□□□□ -1.02
SYNE1-228ENST00000490135 MPNDQ8N594 471 aa8.66□□□□□ -1.02
SYNE1-228ENST00000490135 DDX11Q96FC9 970 aa8.66□□□□□ -1.02
SYNE1-228ENST00000490135 ZBTB22O15209 634 aa8.65□□□□□ -1.02
SYNE1-228ENST00000490135 MNAT1P51948 309 aa8.65□□□□□ -1.02
SYNE1-228ENST00000490135 SYCP1Q15431 976 aa8.65□□□□□ -1.02
SYNE1-228ENST00000490135 BICD2Q8TD16 824 aa8.65□□□□□ -1.02
SYNE1-228ENST00000490135 NF2P35240 595 aa8.65□□□□□ -1.02
SYNE1-228ENST00000490135 SAFBQ15424 915 aaKnown RBP eCLIP8.65□□□□□ -1.02
SYNE1-228ENST00000490135 RPAINQ86UA6 219 aa8.65□□□□□ -1.02
SYNE1-228ENST00000490135 RUFY2Q8WXA3 655 aa8.65□□□□□ -1.02
SYNE1-228ENST00000490135 PRKRIP1Q9H875 184 aaPredicted RBP8.65□□□□□ -1.02
SYNE1-228ENST00000490135 CPSF2Q9P2I0 782 aaKnown RBP8.65□□□□□ -1.02
SYNE1-228ENST00000490135 POLR3GO15318 223 aaPredicted RBP8.65□□□□□ -1.02
SYNE1-228ENST00000490135 NGDNQ8NEJ9 315 aaKnown RBP8.65□□□□□ -1.02
SYNE1-228ENST00000490135 TMEM51Q9NW97 253 aa8.65□□□□□ -1.03
SYNE1-228ENST00000490135 SETD5Q9C0A6 1442 aa8.65□□□□□ -1.03
SYNE1-228ENST00000490135 U2AF2P26368 475 aaKnown RBP eCLIP8.65□□□□□ -1.03
SYNE1-228ENST00000490135 FOXD4L6Q3SYB3 417 aaPredicted RBP8.65□□□□□ -1.03
SYNE1-228ENST00000490135 FOXD4L3Q6VB84 417 aaPredicted RBP8.65□□□□□ -1.03
SYNE1-228ENST00000490135 SEPT11Q9NVA2 429 aaKnown RBP8.65□□□□□ -1.03
SYNE1-228ENST00000490135 EVA1CP58658 441 aa8.64□□□□□ -1.03
SYNE1-228ENST00000490135 NUCB2P80303 420 aa8.64□□□□□ -1.03
SYNE1-228ENST00000490135 HS1BP3Q53T59 392 aa8.64□□□□□ -1.03
SYNE1-228ENST00000490135 MEX3CQ5U5Q3 659 aaKnown RBP8.64□□□□□ -1.03
SYNE1-228ENST00000490135 ZKSCAN1P17029 563 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-228ENST00000490135 SKIDA1Q1XH10 827 aa8.64□□□□□ -1.03
SYNE1-228ENST00000490135 ERLIN2O94905 339 aa8.64□□□□□ -1.03
SYNE1-228ENST00000490135 BRMS1Q9HCU9 246 aa8.64□□□□□ -1.03
SYNE1-228ENST00000490135 GOLGA6L7A0A1B0GV03 622 aa8.64□□□□□ -1.03
SYNE1-228ENST00000490135 C1orf141Q5JVX7 400 aa8.64□□□□□ -1.03
SYNE1-228ENST00000490135 RBM33Q96EV2 1170 aaKnown RBP8.64□□□□□ -1.03
SYNE1-228ENST00000490135 LTV1Q96GA3 475 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-228ENST00000490135 SUDS3Q9H7L9 328 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-228ENST00000490135 MYRIPQ8NFW9 859 aa8.63□□□□□ -1.03
SYNE1-228ENST00000490135 ANO2Q9NQ90 1003 aa8.63□□□□□ -1.03
SYNE1-228ENST00000490135 ZKSCAN5Q9Y2L8 839 aa8.63□□□□□ -1.03
SYNE1-228ENST00000490135 RAB3GAP2Q9H2M9 1393 aa8.63□□□□□ -1.03
SYNE1-228ENST00000490135 NINLQ9Y2I6 1382 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms