RNA–Protein interactions for RNA: ENST00000489535.2

SMC6-209, Transcript of structural maintenance of chromosomes 6, humanhuman

TSL 2

Gene SMC6, Length 550 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-209ENST00000489535 URB2Q14146 1524 aaKnown RBP12.68□□□□□ -0.38
SMC6-209ENST00000489535 FGD5Q6ZNL6 1462 aa12.68□□□□□ -0.38
SMC6-209ENST00000489535 AXIN1O15169 862 aa12.68□□□□□ -0.38
SMC6-209ENST00000489535 PUS10Q3MIT2 529 aaKnown RBP12.68□□□□□ -0.38
SMC6-209ENST00000489535 STK17AQ9UEE5 414 aa12.68□□□□□ -0.38
SMC6-209ENST00000489535 RUSC2Q8N2Y8 1516 aa12.67□□□□□ -0.38
SMC6-209ENST00000489535 C11orf95C9JLR9 678 aaPredicted RBP12.67□□□□□ -0.38
SMC6-209ENST00000489535 WIPF1O43516 503 aa12.67□□□□□ -0.38
SMC6-209ENST00000489535 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.67□□□□□ -0.38
SMC6-209ENST00000489535 SOGA1O94964 1423 aa12.67□□□□□ -0.38
SMC6-209ENST00000489535 EEA1Q15075 1411 aa12.66□□□□□ -0.38
SMC6-209ENST00000489535 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.66□□□□□ -0.38
SMC6-209ENST00000489535 CTC1Q2NKJ3 1217 aa12.66□□□□□ -0.38
SMC6-209ENST00000489535 SMCPP49901 116 aaPredicted RBP12.65□□□□□ -0.38
SMC6-209ENST00000489535 THOC2Q8NI27 1593 aaKnown RBP12.64□□□□□ -0.39
SMC6-209ENST00000489535 CYP4X1Q8N118 509 aa12.63□□□□□ -0.39
SMC6-209ENST00000489535 MRC2Q9UBG0 1479 aa12.63□□□□□ -0.39
SMC6-209ENST00000489535 LCE2CQ5TA81 110 aa12.62□□□□□ -0.39
SMC6-209ENST00000489535 FCF1Q9Y324 198 aaKnown RBP12.62□□□□□ -0.39
SMC6-209ENST00000489535 POLA1P09884 1462 aaPredicted RBP12.61□□□□□ -0.39
SMC6-209ENST00000489535 ERCC6Q03468 1493 aa12.61□□□□□ -0.39
SMC6-209ENST00000489535 KIF21BO75037 1637 aa12.61□□□□□ -0.39
SMC6-209ENST00000489535 CD2BP2O95400 341 aaKnown RBP12.6□□□□□ -0.39
SMC6-209ENST00000489535 PAXIP1Q6ZW49 1069 aaPredicted RBP12.6□□□□□ -0.39
SMC6-209ENST00000489535 PXYLP1Q8TE99 480 aa12.6□□□□□ -0.39
SMC6-209ENST00000489535 ARHGEF1Q92888 912 aaKnown RBP12.6□□□□□ -0.39
SMC6-209ENST00000489535 CFAP44Q96MT7 982 aa12.6□□□□□ -0.39
SMC6-209ENST00000489535 WDR62O43379 1518 aa12.6□□□□□ -0.39
SMC6-209ENST00000489535 LOC105371045A0A1W2PR82 267 aa12.59□□□□□ -0.39
SMC6-209ENST00000489535 INSM1Q01101 510 aaPredicted RBP12.59□□□□□ -0.39
SMC6-209ENST00000489535 THAP11Q96EK4 314 aa12.59□□□□□ -0.39
SMC6-209ENST00000489535 PBRM1Q86U86 1689 aa12.58□□□□□ -0.4
SMC6-209ENST00000489535 NUTM2FA1L443 756 aa12.58□□□□□ -0.4
SMC6-209ENST00000489535 TARBP1Q13395 1621 aaKnown RBP12.57□□□□□ -0.4
SMC6-209ENST00000489535 MORN1Q5T089 497 aa12.56□□□□□ -0.4
SMC6-209ENST00000489535 RAD54L2Q9Y4B4 1467 aa12.56□□□□□ -0.4
SMC6-209ENST00000489535 CUX2O14529 1486 aa12.55□□□□□ -0.4
SMC6-209ENST00000489535 FAM160A2Q8N612 972 aaPredicted RBP12.55□□□□□ -0.4
SMC6-209ENST00000489535 ABCA10Q8WWZ4 1543 aa12.55□□□□□ -0.4
SMC6-209ENST00000489535 ABCA5Q8WWZ7 1642 aa12.55□□□□□ -0.4
SMC6-209ENST00000489535 KIF27Q86VH2 1401 aa12.54□□□□□ -0.4
SMC6-209ENST00000489535 FCHSD2O94868 740 aa12.53□□□□□ -0.4
SMC6-209ENST00000489535 OATP04181 439 aa12.53□□□□□ -0.4
SMC6-209ENST00000489535 RSPH4AQ5TD94 716 aa12.53□□□□□ -0.4
SMC6-209ENST00000489535 TTC24A2A3L6 582 aaPredicted RBP12.52□□□□□ -0.41
SMC6-209ENST00000489535 SNRPBP14678 240 aaKnown RBP12.52□□□□□ -0.41
SMC6-209ENST00000489535 KCNV2Q8TDN2 545 aa12.52□□□□□ -0.41
SMC6-209ENST00000489535 ATP13A2Q9NQ11 1180 aa12.52□□□□□ -0.41
SMC6-209ENST00000489535 CUL7Q14999 1698 aa12.51□□□□□ -0.41
SMC6-209ENST00000489535 SMPD1P17405 629 aa12.51□□□□□ -0.41
SMC6-209ENST00000489535 METTL3Q86U44 580 aaKnown RBP12.51□□□□□ -0.41
SMC6-209ENST00000489535 PRDM9Q9NQV7 894 aa12.51□□□□□ -0.41
SMC6-209ENST00000489535 GOLGA3Q08378 1498 aa12.51□□□□□ -0.41
SMC6-209ENST00000489535 TERTO14746 1132 aaKnown RBP12.5□□□□□ -0.41
SMC6-209ENST00000489535 FUT2Q10981 343 aa12.5□□□□□ -0.41
SMC6-209ENST00000489535 ERICH3Q5RHP9 1530 aa12.49□□□□□ -0.41
SMC6-209ENST00000489535 FMNL1O95466 1100 aaPredicted RBP12.48□□□□□ -0.41
SMC6-209ENST00000489535 TRIM47Q96LD4 638 aa12.48□□□□□ -0.41
SMC6-209ENST00000489535 SLC27A5Q9Y2P5 690 aa12.48□□□□□ -0.41
SMC6-209ENST00000489535 WNT7AO00755 349 aa12.47□□□□□ -0.41
SMC6-209ENST00000489535 CTTNBP2Q8WZ74 1663 aa12.47□□□□□ -0.41
SMC6-209ENST00000489535 ATP6V1AP38606 617 aa12.46□□□□□ -0.41
SMC6-209ENST00000489535 SNIP1Q8TAD8 396 aaKnown RBP12.46□□□□□ -0.41
SMC6-209ENST00000489535 SALL2Q9Y467 1007 aaPredicted RBP12.46□□□□□ -0.41
SMC6-209ENST00000489535 EIF4G3O43432 1585 aaKnown RBP12.45□□□□□ -0.42
SMC6-209ENST00000489535 IFT140Q96RY7 1462 aa12.45□□□□□ -0.42
SMC6-209ENST00000489535 RAPGEF2Q9Y4G8 1499 aa12.45□□□□□ -0.42
SMC6-209ENST00000489535 ZBTB24O43167 697 aaPredicted RBP12.44□□□□□ -0.42
SMC6-209ENST00000489535 BRICD5Q6PL45 260 aa12.44□□□□□ -0.42
SMC6-209ENST00000489535 RDH13Q8NBN7 331 aa12.44□□□□□ -0.42
SMC6-209ENST00000489535 PRXQ9BXM0 1461 aa12.44□□□□□ -0.42
SMC6-209ENST00000489535 SENP2Q9HC62 589 aa12.43□□□□□ -0.42
SMC6-209ENST00000489535 DAXXQ9UER7 740 aaPredicted RBP12.43□□□□□ -0.42
SMC6-209ENST00000489535 GAPVD1Q14C86 1478 aa12.42□□□□□ -0.42
SMC6-209ENST00000489535 J3QL48 77 aa12.42□□□□□ -0.42
SMC6-209ENST00000489535 MSS51Q4VC12 460 aa12.42□□□□□ -0.42
SMC6-209ENST00000489535 TRIM32Q13049 653 aa12.4□□□□□ -0.42
SMC6-209ENST00000489535 HIC1Q14526 733 aa12.4□□□□□ -0.42
SMC6-209ENST00000489535 RNF19BQ6ZMZ0 732 aa12.4□□□□□ -0.42
SMC6-209ENST00000489535 MRGPRX2Q96LB1 330 aa12.4□□□□□ -0.42
SMC6-209ENST00000489535 IGF1RP08069 1367 aa12.4□□□□□ -0.42
SMC6-209ENST00000489535 TDRD9Q8NDG6 1382 aaKnown RBP12.4□□□□□ -0.42
SMC6-209ENST00000489535 TNIKQ9UKE5 1360 aa12.4□□□□□ -0.42
SMC6-209ENST00000489535 DDX11L8A8MPP1 907 aa12.39□□□□□ -0.43
SMC6-209ENST00000489535 GCGRP47871 477 aa12.39□□□□□ -0.43
SMC6-209ENST00000489535 UBTFP17480 764 aaKnown RBP12.38□□□□□ -0.43
SMC6-209ENST00000489535 HPS1Q92902 700 aa12.38□□□□□ -0.43
SMC6-209ENST00000489535 ADAMTS12P58397 1594 aa12.38□□□□□ -0.43
SMC6-209ENST00000489535 ZNF608Q9ULD9 1512 aaPredicted RBP12.37□□□□□ -0.43
SMC6-209ENST00000489535 CARMIL1Q5VZK9 1371 aa12.36□□□□□ -0.43
SMC6-209ENST00000489535 FECHP22830 423 aa12.36□□□□□ -0.43
SMC6-209ENST00000489535 KIFC2Q96AC6 838 aa12.36□□□□□ -0.43
SMC6-209ENST00000489535 CEP162Q5TB80 1403 aa12.36□□□□□ -0.43
SMC6-209ENST00000489535 AQRO60306 1485 aaKnown RBP eCLIP12.35□□□□□ -0.43
SMC6-209ENST00000489535 NLRP7Q8WX94 980 aa12.35□□□□□ -0.43
SMC6-209ENST00000489535 GRIN2BQ13224 1484 aa12.34□□□□□ -0.43
SMC6-209ENST00000489535 SEMA3EO15041 775 aa12.33□□□□□ -0.44
SMC6-209ENST00000489535 LORP23490 312 aaPredicted RBP12.33□□□□□ -0.44
SMC6-209ENST00000489535 MMP16P51512 607 aa12.33□□□□□ -0.44
SMC6-209ENST00000489535 SULF1Q8IWU6 871 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms