RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 PLEKHH1Q9ULM0 1364 aa12.89□□□□□ -0.35
SF3B1-211ENST00000487698 AMER1Q5JTC6 1135 aaPredicted RBP12.88□□□□□ -0.35
SF3B1-211ENST00000487698 SIRT1Q96EB6 747 aa12.88□□□□□ -0.35
SF3B1-211ENST00000487698 MRS2Q9HD23 443 aa12.88□□□□□ -0.35
SF3B1-211ENST00000487698 XRN1Q8IZH2 1706 aaKnown RBP12.88□□□□□ -0.35
SF3B1-211ENST00000487698 SAFB2Q14151 953 aaKnown RBP eCLIP12.88□□□□□ -0.35
SF3B1-211ENST00000487698 POGKQ9P215 609 aa12.88□□□□□ -0.35
SF3B1-211ENST00000487698 BRD4O60885 1362 aaPredicted RBP12.87□□□□□ -0.35
SF3B1-211ENST00000487698 NINLQ9Y2I6 1382 aa12.87□□□□□ -0.35
SF3B1-211ENST00000487698 ADGRB2O60241 1585 aa12.87□□□□□ -0.35
SF3B1-211ENST00000487698 KNSTRNQ9Y448 316 aa12.87□□□□□ -0.35
SF3B1-211ENST00000487698 MINK1Q8N4C8 1332 aaPredicted RBP12.86□□□□□ -0.35
SF3B1-211ENST00000487698 PTPRUQ92729 1446 aa12.86□□□□□ -0.35
SF3B1-211ENST00000487698 CNGB1Q14028 1251 aaPredicted RBP12.86□□□□□ -0.35
SF3B1-211ENST00000487698 CARD14Q9BXL6 1004 aa12.86□□□□□ -0.35
SF3B1-211ENST00000487698 ATAD2Q6PL18 1390 aa12.85□□□□□ -0.35
SF3B1-211ENST00000487698 WAPLQ7Z5K2 1190 aa12.85□□□□□ -0.35
SF3B1-211ENST00000487698 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.85□□□□□ -0.35
SF3B1-211ENST00000487698 ANKRD36BQ8N2N9 1353 aa12.85□□□□□ -0.35
SF3B1-211ENST00000487698 ROBO2Q9HCK4 1378 aa12.85□□□□□ -0.35
SF3B1-211ENST00000487698 CC2D1BQ5T0F9 858 aaKnown RBP12.85□□□□□ -0.35
SF3B1-211ENST00000487698 BCANQ96GW7 911 aa12.85□□□□□ -0.35
SF3B1-211ENST00000487698 CABP2Q9NPB3 220 aa12.85□□□□□ -0.35
SF3B1-211ENST00000487698 TBX22Q9Y458 520 aa12.85□□□□□ -0.35
SF3B1-211ENST00000487698 PTCH1Q13635 1447 aa12.84□□□□□ -0.35
SF3B1-211ENST00000487698 NLRP13Q86W25 1043 aa12.84□□□□□ -0.35
SF3B1-211ENST00000487698 SLC12A5Q9H2X9 1139 aa12.84□□□□□ -0.35
SF3B1-211ENST00000487698 NSD3Q9BZ95 1437 aa12.84□□□□□ -0.35
SF3B1-211ENST00000487698 CD163L1Q9NR16 1453 aa12.83□□□□□ -0.36
SF3B1-211ENST00000487698 SLC26A8Q96RN1 970 aa12.83□□□□□ -0.36
SF3B1-211ENST00000487698 CHD2O14647 1828 aaKnown RBP12.83□□□□□ -0.36
SF3B1-211ENST00000487698 SRPK2P78362 688 aaKnown RBP12.82□□□□□ -0.36
SF3B1-211ENST00000487698 PIK3R4Q99570 1358 aa12.82□□□□□ -0.36
SF3B1-211ENST00000487698 ANKRD26Q9UPS8 1709 aa12.82□□□□□ -0.36
SF3B1-211ENST00000487698 TMC1Q8TDI8 760 aa12.82□□□□□ -0.36
SF3B1-211ENST00000487698 CDK19Q9BWU1 502 aa12.82□□□□□ -0.36
SF3B1-211ENST00000487698 TOPAZ1Q8N9V7 1692 aa12.81□□□□□ -0.36
SF3B1-211ENST00000487698 PNISRQ8TF01 805 aaKnown RBP12.8□□□□□ -0.36
SF3B1-211ENST00000487698 A0A1W2PP64 1363 aa12.8□□□□□ -0.36
SF3B1-211ENST00000487698 ATP7BP35670 1465 aa12.8□□□□□ -0.36
SF3B1-211ENST00000487698 FAM9BQ8IZU0 186 aa12.8□□□□□ -0.36
SF3B1-211ENST00000487698 ANKLE2Q86XL3 938 aa12.79□□□□□ -0.36
SF3B1-211ENST00000487698 KIF20BQ96Q89 1820 aa12.79□□□□□ -0.36
SF3B1-211ENST00000487698 WASLO00401 505 aaPredicted RBP12.79□□□□□ -0.36
SF3B1-211ENST00000487698 AKAP12Q02952 1782 aa12.78□□□□□ -0.36
SF3B1-211ENST00000487698 MON2Q7Z3U7 1717 aa12.78□□□□□ -0.36
SF3B1-211ENST00000487698 PPP2R1AP30153 589 aa12.78□□□□□ -0.36
SF3B1-211ENST00000487698 ITSN1Q15811 1721 aa12.78□□□□□ -0.36
SF3B1-211ENST00000487698 CDC42BPGQ6DT37 1551 aa12.77□□□□□ -0.36
SF3B1-211ENST00000487698 NSD2O96028 1365 aa12.77□□□□□ -0.36
SF3B1-211ENST00000487698 AMOTL2Q9Y2J4 779 aa12.77□□□□□ -0.36
SF3B1-211ENST00000487698 HNRNPUQ00839 825 aaKnown RBP eCLIP12.77□□□□□ -0.37
SF3B1-211ENST00000487698 NPHP4O75161 1426 aaPredicted RBP12.77□□□□□ -0.37
SF3B1-211ENST00000487698 CGNL1Q0VF96 1302 aa12.76□□□□□ -0.37
SF3B1-211ENST00000487698 TERF2IPQ9NYB0 399 aa12.76□□□□□ -0.37
SF3B1-211ENST00000487698 INSRP06213 1382 aa12.75□□□□□ -0.37
SF3B1-211ENST00000487698 CPSF1Q10570 1443 aaKnown RBP12.75□□□□□ -0.37
SF3B1-211ENST00000487698 NWD1Q149M9 1564 aa12.75□□□□□ -0.37
SF3B1-211ENST00000487698 PPIP5K1Q6PFW1 1433 aa12.75□□□□□ -0.37
SF3B1-211ENST00000487698 NALCNQ8IZF0 1738 aa12.74□□□□□ -0.37
SF3B1-211ENST00000487698 CABP1Q9NZU7 370 aa12.74□□□□□ -0.37
SF3B1-211ENST00000487698 FMN2Q9NZ56 1722 aa12.73□□□□□ -0.37
SF3B1-211ENST00000487698 ZBED9Q6R2W3 1325 aa12.73□□□□□ -0.37
SF3B1-211ENST00000487698 PRR36Q9H6K5 1346 aa12.73□□□□□ -0.37
SF3B1-211ENST00000487698 NRKQ7Z2Y5 1582 aa12.73□□□□□ -0.37
SF3B1-211ENST00000487698 RGPD8O14715 1765 aaPredicted RBP12.73□□□□□ -0.37
SF3B1-211ENST00000487698 KCNA6P17658 529 aa12.73□□□□□ -0.37
SF3B1-211ENST00000487698 NUDT16Q96DE0 195 aaKnown RBP12.73□□□□□ -0.37
SF3B1-211ENST00000487698 HDGFL2Q7Z4V5 671 aaPredicted RBP12.72□□□□□ -0.37
SF3B1-211ENST00000487698 BLMP54132 1417 aaPredicted RBP12.72□□□□□ -0.37
SF3B1-211ENST00000487698 SHPRHQ149N8 1683 aa12.72□□□□□ -0.37
SF3B1-211ENST00000487698 CCDC61Q9Y6R9 512 aa12.71□□□□□ -0.38
SF3B1-211ENST00000487698 EDC4Q6P2E9 1401 aaKnown RBP12.71□□□□□ -0.38
SF3B1-211ENST00000487698 NKTRP30414 1462 aaKnown RBP12.71□□□□□ -0.38
SF3B1-211ENST00000487698 KDM4FA0A1W2PPD8 638 aa12.7□□□□□ -0.38
SF3B1-211ENST00000487698 MORC1Q86VD1 984 aa12.7□□□□□ -0.38
SF3B1-211ENST00000487698 SCAF1Q9H7N4 1312 aaKnown RBP12.7□□□□□ -0.38
SF3B1-211ENST00000487698 POLR3AO14802 1390 aaPredicted RBP12.7□□□□□ -0.38
SF3B1-211ENST00000487698 NCKAP5LQ9HCH0 1330 aa12.69□□□□□ -0.38
SF3B1-211ENST00000487698 FYB1O15117 783 aa12.68□□□□□ -0.38
SF3B1-211ENST00000487698 ANKARQ7Z5J8 1434 aa12.68□□□□□ -0.38
SF3B1-211ENST00000487698 LMTK3Q96Q04 1460 aa12.67□□□□□ -0.38
SF3B1-211ENST00000487698 PLEKHG3A1L390 1219 aa12.67□□□□□ -0.38
SF3B1-211ENST00000487698 GTF3C3Q9Y5Q9 886 aa12.67□□□□□ -0.38
SF3B1-211ENST00000487698 ADGRL3Q9HAR2 1447 aa12.66□□□□□ -0.38
SF3B1-211ENST00000487698 STRCP1A6NGW2 1772 aa12.66□□□□□ -0.38
SF3B1-211ENST00000487698 GGNBP2Q9H3C7 697 aa12.65□□□□□ -0.38
SF3B1-211ENST00000487698 STRCQ7RTU9 1775 aa12.65□□□□□ -0.38
SF3B1-211ENST00000487698 USP6P35125 1406 aa12.64□□□□□ -0.39
SF3B1-211ENST00000487698 MAP2P11137 1827 aaKnown RBP12.64□□□□□ -0.39
SF3B1-211ENST00000487698 ZNF692Q9BU19 519 aaPredicted RBP12.64□□□□□ -0.39
SF3B1-211ENST00000487698 ADAMTS8Q9UP79 889 aa12.64□□□□□ -0.39
SF3B1-211ENST00000487698 COL3A1P02461 1466 aaPredicted RBP12.64□□□□□ -0.39
SF3B1-211ENST00000487698 SSH2Q76I76 1423 aa12.64□□□□□ -0.39
SF3B1-211ENST00000487698 TNNT2P45379 298 aaPredicted RBP12.64□□□□□ -0.39
SF3B1-211ENST00000487698 ACEP12821 1306 aa12.63□□□□□ -0.39
SF3B1-211ENST00000487698 WDR43Q15061 677 aaKnown RBP eCLIP12.63□□□□□ -0.395e-8■■□□□ 13.9
SF3B1-211ENST00000487698 MTHFSP49914 203 aa12.62□□□□□ -0.39
SF3B1-211ENST00000487698 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.62□□□□□ -0.39
SF3B1-211ENST00000487698 USP54Q70EL1 1684 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms