RNA–Protein interactions for RNA: ENST00000485867.5

SMC4-217, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 629 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-217ENST00000485867 FHOD3Q2V2M9 1422 aa11.51□□□□□ -0.57
SMC4-217ENST00000485867 AKNAQ7Z591 1439 aa11.51□□□□□ -0.57
SMC4-217ENST00000485867 OSBPP22059 807 aa11.5□□□□□ -0.57
SMC4-217ENST00000485867 TSKSQ9UJT2 592 aa11.5□□□□□ -0.57
SMC4-217ENST00000485867 EFCAB5A4FU69 1503 aa11.5□□□□□ -0.57
SMC4-217ENST00000485867 ZFYVE16Q7Z3T8 1539 aa11.5□□□□□ -0.57
SMC4-217ENST00000485867 CFAP74Q9C0B2 1584 aa11.5□□□□□ -0.57
SMC4-217ENST00000485867 SOWAHBA6NEL2 793 aa11.49□□□□□ -0.57
SMC4-217ENST00000485867 BCAMP50895 628 aa11.49□□□□□ -0.57
SMC4-217ENST00000485867 YEATS2Q9ULM3 1422 aa11.49□□□□□ -0.57
SMC4-217ENST00000485867 RAPGEF6Q8TEU7 1601 aa11.49□□□□□ -0.57
SMC4-217ENST00000485867 FAM98CQ17RN3 349 aaKnown RBP11.48□□□□□ -0.57
SMC4-217ENST00000485867 ARHGEF12Q9NZN5 1544 aa11.47□□□□□ -0.57
SMC4-217ENST00000485867 IFFO2Q5TF58 517 aa11.47□□□□□ -0.57
SMC4-217ENST00000485867 SETD1BQ9UPS6 1966 aaKnown RBP11.47□□□□□ -0.57
SMC4-217ENST00000485867 PACS2Q86VP3 889 aa11.46□□□□□ -0.57
SMC4-217ENST00000485867 CDCA7LQ96GN5 454 aa11.46□□□□□ -0.57
SMC4-217ENST00000485867 PRSS12P56730 875 aa11.45□□□□□ -0.58
SMC4-217ENST00000485867 FAM198AQ9UFP1 575 aa11.45□□□□□ -0.58
SMC4-217ENST00000485867 HECW1Q76N89 1606 aa11.45□□□□□ -0.58
SMC4-217ENST00000485867 MAGI2Q86UL8 1455 aa11.44□□□□□ -0.58
SMC4-217ENST00000485867 CDHR5Q9HBB8 845 aa11.44□□□□□ -0.58
SMC4-217ENST00000485867 LTBP4Q8N2S1 1624 aa11.44□□□□□ -0.58
SMC4-217ENST00000485867 SAMD9Q5K651 1589 aa11.44□□□□□ -0.58
SMC4-217ENST00000485867 MLECQ14165 292 aa11.43□□□□□ -0.58
SMC4-217ENST00000485867 KCNV2Q8TDN2 545 aa11.43□□□□□ -0.58
SMC4-217ENST00000485867 ARHGEF1Q92888 912 aaKnown RBP11.43□□□□□ -0.58
SMC4-217ENST00000485867 IQSEC2Q5JU85 1478 aa11.43□□□□□ -0.58
SMC4-217ENST00000485867 P3H3Q8IVL6 736 aa11.42□□□□□ -0.58
SMC4-217ENST00000485867 NUP153P49790 1475 aaKnown RBP11.42□□□□□ -0.58
SMC4-217ENST00000485867 PRXQ9BXM0 1461 aa11.42□□□□□ -0.58
SMC4-217ENST00000485867 PTPRTO14522 1441 aa11.42□□□□□ -0.58
SMC4-217ENST00000485867 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.41□□□□□ -0.584e-7■■□□□ 12.8
SMC4-217ENST00000485867 FAM9AQ8IZU1 332 aaPredicted RBP11.41□□□□□ -0.58
SMC4-217ENST00000485867 WBP1LQ9NX94 342 aa11.41□□□□□ -0.58
SMC4-217ENST00000485867 UHRF1BP1Q6BDS2 1440 aa11.41□□□□□ -0.58
SMC4-217ENST00000485867 C3orf80F5H4A9 247 aa11.4□□□□□ -0.58
SMC4-217ENST00000485867 NYAP1Q6ZVC0 841 aa11.4□□□□□ -0.58
SMC4-217ENST00000485867 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.4□□□□□ -0.58
SMC4-217ENST00000485867 CEBPAP49715 358 aaPredicted RBP11.39□□□□□ -0.59
SMC4-217ENST00000485867 LRCH3Q96II8 777 aa11.39□□□□□ -0.59
SMC4-217ENST00000485867 C9orf84Q5VXU9 1444 aa11.38□□□□□ -0.59
SMC4-217ENST00000485867 SMAPO00193 183 aa11.38□□□□□ -0.59
SMC4-217ENST00000485867 ITGBL1O95965 494 aaPredicted RBP11.38□□□□□ -0.59
SMC4-217ENST00000485867 RBM27Q9P2N5 1060 aaKnown RBP11.38□□□□□ -0.59
SMC4-217ENST00000485867 ATP10AO60312 1499 aa11.38□□□□□ -0.59
SMC4-217ENST00000485867 TATDN2Q93075 761 aa11.37□□□□□ -0.59
SMC4-217ENST00000485867 NPDC1Q9NQX5 325 aaPredicted RBP11.37□□□□□ -0.59
SMC4-217ENST00000485867 TSR3Q9UJK0 312 aaKnown RBP11.37□□□□□ -0.59
SMC4-217ENST00000485867 C3P01024 1663 aa11.36□□□□□ -0.59
SMC4-217ENST00000485867 A0A0G2JS52 829 aa11.36□□□□□ -0.59
SMC4-217ENST00000485867 MLLT3P42568 568 aaPredicted RBP11.36□□□□□ -0.59
SMC4-217ENST00000485867 HPS5Q9UPZ3 1129 aa11.36□□□□□ -0.59
SMC4-217ENST00000485867 NBPF26B4DH59 902 aa11.35□□□□□ -0.59
SMC4-217ENST00000485867 TTC13Q8NBP0 860 aa11.35□□□□□ -0.59
SMC4-217ENST00000485867 SCAPERQ9BY12 1400 aa11.35□□□□□ -0.59
SMC4-217ENST00000485867 PNMA3Q9UL41 463 aa11.34□□□□□ -0.59
SMC4-217ENST00000485867 PLEKHD1A6NEE1 506 aa11.33□□□□□ -0.6
SMC4-217ENST00000485867 SAMD7Q7Z3H4 446 aa11.33□□□□□ -0.6
SMC4-217ENST00000485867 NCOA1Q15788 1441 aa11.33□□□□□ -0.6
SMC4-217ENST00000485867 NUDT18Q6ZVK8 323 aa11.32□□□□□ -0.6
SMC4-217ENST00000485867 MYO5CQ9NQX4 1742 aa11.32□□□□□ -0.6
SMC4-217ENST00000485867 PADI6Q6TGC4 694 aa11.31□□□□□ -0.6
SMC4-217ENST00000485867 MED1Q15648 1581 aaPredicted RBP11.31□□□□□ -0.6
SMC4-217ENST00000485867 KDM5CP41229 1560 aa11.3□□□□□ -0.6
SMC4-217ENST00000485867 REREQ9P2R6 1566 aa11.3□□□□□ -0.6
SMC4-217ENST00000485867 DIP2CQ9Y2E4 1556 aa11.3□□□□□ -0.6
SMC4-217ENST00000485867 PLCH2O75038 1416 aa11.3□□□□□ -0.6
SMC4-217ENST00000485867 RGS20O76081 388 aa11.3□□□□□ -0.6
SMC4-217ENST00000485867 PLCB2Q00722 1185 aa11.3□□□□□ -0.6
SMC4-217ENST00000485867 UBAP1LF5GYI3 381 aa11.28□□□□□ -0.6
SMC4-217ENST00000485867 PPP4CP60510 307 aa11.28□□□□□ -0.6
SMC4-217ENST00000485867 CAMSAP1Q5T5Y3 1602 aa11.27□□□□□ -0.6
SMC4-217ENST00000485867 ABCA6Q8N139 1617 aa11.27□□□□□ -0.6
SMC4-217ENST00000485867 TRAPPC8Q9Y2L5 1435 aa11.27□□□□□ -0.6
SMC4-217ENST00000485867 ZNF518AQ6AHZ1 1483 aa11.27□□□□□ -0.6
SMC4-217ENST00000485867 CDK13Q14004 1512 aaKnown RBP11.27□□□□□ -0.61
SMC4-217ENST00000485867 KCNC4Q03721 635 aa11.26□□□□□ -0.61
SMC4-217ENST00000485867 AGLP35573 1532 aa11.25□□□□□ -0.61
SMC4-217ENST00000485867 ZNF335Q9H4Z2 1342 aaPredicted RBP11.25□□□□□ -0.61
SMC4-217ENST00000485867 PTGDRQ13258 359 aa11.24□□□□□ -0.61
SMC4-217ENST00000485867 MROH2AA6NES4 1674 aa11.24□□□□□ -0.61
SMC4-217ENST00000485867 SUPT6HQ7KZ85 1726 aaKnown RBP11.23□□□□□ -0.61
SMC4-217ENST00000485867 SEMA3EO15041 775 aa11.23□□□□□ -0.61
SMC4-217ENST00000485867 ZNF142P52746 1687 aaPredicted RBP11.23□□□□□ -0.61
SMC4-217ENST00000485867 KIF14Q15058 1648 aa11.22□□□□□ -0.61
SMC4-217ENST00000485867 EFCAB2Q5VUJ9 269 aa11.22□□□□□ -0.61
SMC4-217ENST00000485867 EYA1Q99502 592 aa11.22□□□□□ -0.61
SMC4-217ENST00000485867 NPATQ14207 1427 aa11.21□□□□□ -0.61
SMC4-217ENST00000485867 CNTLNQ9NXG0 1405 aa11.21□□□□□ -0.61
SMC4-217ENST00000485867 HDGFP51858 240 aaKnown RBP11.21□□□□□ -0.61
SMC4-217ENST00000485867 ARHGAP5Q13017 1502 aa11.2□□□□□ -0.62
SMC4-217ENST00000485867 MLH3Q9UHC1 1453 aa11.2□□□□□ -0.62
SMC4-217ENST00000485867 TJAP1Q5JTD0 557 aa11.2□□□□□ -0.62
SMC4-217ENST00000485867 SWT1Q5T5J6 900 aaKnown RBP11.2□□□□□ -0.62
SMC4-217ENST00000485867 AFAP1Q8N556 730 aa11.2□□□□□ -0.62
SMC4-217ENST00000485867 MYO3AQ8NEV4 1616 aa11.2□□□□□ -0.62
SMC4-217ENST00000485867 PLA2R1Q13018 1463 aa11.19□□□□□ -0.62
SMC4-217ENST00000485867 HSPA1LP34931 641 aa11.19□□□□□ -0.62
SMC4-217ENST00000485867 RANGAP1P46060 587 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms