RNA–Protein interactions for RNA: ENST00000481057.1

CBX3-206, Transcript of chromobox 3, humanhuman

TSL 2

Gene CBX3, Length 860 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-206ENST00000481057 CADPSQ9ULU8 1353 aa12.89□□□□□ -0.35
CBX3-206ENST00000481057 BAZ1BQ9UIG0 1483 aaKnown RBP12.89□□□□□ -0.35
CBX3-206ENST00000481057 HOXA2O43364 376 aa12.88□□□□□ -0.35
CBX3-206ENST00000481057 PTPN5P54829 565 aa12.88□□□□□ -0.35
CBX3-206ENST00000481057 NYAP1Q6ZVC0 841 aa12.87□□□□□ -0.35
CBX3-206ENST00000481057 ZCCHC6Q5VYS8 1495 aaKnown RBP12.86□□□□□ -0.35
CBX3-206ENST00000481057 CEP164Q9UPV0 1460 aa12.86□□□□□ -0.35
CBX3-206ENST00000481057 MOXD2PA6NHM9 499 aa12.86□□□□□ -0.35
CBX3-206ENST00000481057 SKIV2LQ15477 1246 aaKnown RBP12.86□□□□□ -0.35
CBX3-206ENST00000481057 ATP6V1AP38606 617 aa12.85□□□□□ -0.35
CBX3-206ENST00000481057 CLK2P49760 499 aaKnown RBP12.85□□□□□ -0.35
CBX3-206ENST00000481057 MMRN1Q13201 1228 aa12.84□□□□□ -0.35
CBX3-206ENST00000481057 GRIPAP1Q4V328 841 aa12.84□□□□□ -0.35
CBX3-206ENST00000481057 RSBN1LQ6PCB5 846 aaPredicted RBP12.84□□□□□ -0.35
CBX3-206ENST00000481057 SYNJ2O15056 1496 aa12.84□□□□□ -0.35
CBX3-206ENST00000481057 SPTLC1O15269 473 aa12.83□□□□□ -0.36
CBX3-206ENST00000481057 NDUFV2P19404 249 aa12.83□□□□□ -0.36
CBX3-206ENST00000481057 GJA5P36382 358 aa12.83□□□□□ -0.36
CBX3-206ENST00000481057 RIC3Q7Z5B4 369 aa12.83□□□□□ -0.36
CBX3-206ENST00000481057 HLA-CQ95604 372 aa12.83□□□□□ -0.36
CBX3-206ENST00000481057 POLR3EQ9NVU0 708 aa12.83□□□□□ -0.36
CBX3-206ENST00000481057 LIMD1Q9UGP4 676 aa12.83□□□□□ -0.36
CBX3-206ENST00000481057 PCDHB3Q9Y5E6 796 aa12.82□□□□□ -0.36
CBX3-206ENST00000481057 ZNF608Q9ULD9 1512 aaPredicted RBP12.82□□□□□ -0.36
CBX3-206ENST00000481057 GUCA2AQ02747 115 aa12.81□□□□□ -0.36
CBX3-206ENST00000481057 PUS10Q3MIT2 529 aaKnown RBP12.81□□□□□ -0.36
CBX3-206ENST00000481057 MORN1Q5T089 497 aa12.81□□□□□ -0.36
CBX3-206ENST00000481057 PCMTD1Q96MG8 357 aaPredicted RBP12.81□□□□□ -0.36
CBX3-206ENST00000481057 FDX1P10109 184 aa12.8□□□□□ -0.36
CBX3-206ENST00000481057 HCSTQ9UBK5 93 aa12.8□□□□□ -0.36
CBX3-206ENST00000481057 TUSC1Q2TAM9 212 aa12.79□□□□□ -0.36
CBX3-206ENST00000481057 PROCA1Q8NCQ7 364 aaPredicted RBP12.79□□□□□ -0.36
CBX3-206ENST00000481057 SMARCA4P51532 1647 aa12.79□□□□□ -0.36
CBX3-206ENST00000481057 BLOC1S3Q6QNY0 202 aa12.78□□□□□ -0.36
CBX3-206ENST00000481057 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.78□□□□□ -0.36
CBX3-206ENST00000481057 CHD1O14646 1710 aa12.78□□□□□ -0.36
CBX3-206ENST00000481057 PCDHGC3Q9UN70 934 aa12.77□□□□□ -0.37
CBX3-206ENST00000481057 SLC27A5Q9Y2P5 690 aa12.76□□□□□ -0.37
CBX3-206ENST00000481057 PCDHB15Q9Y5E8 787 aa12.76□□□□□ -0.37
CBX3-206ENST00000481057 NR1I2O75469 434 aa12.74□□□□□ -0.37
CBX3-206ENST00000481057 CSPP1Q1MSJ5 1256 aa12.74□□□□□ -0.37
CBX3-206ENST00000481057 FANCD2Q9BXW9 1451 aa12.73□□□□□ -0.37
CBX3-206ENST00000481057 COPS2P61201 443 aa12.73□□□□□ -0.37
CBX3-206ENST00000481057 MTRQ99707 1265 aa12.73□□□□□ -0.37
CBX3-206ENST00000481057 QPCTQ16769 361 aa12.72□□□□□ -0.37
CBX3-206ENST00000481057 PRPF38BQ5VTL8 546 aaKnown RBP12.72□□□□□ -0.37
CBX3-206ENST00000481057 ATP1B4Q9UN42 357 aaPredicted RBP12.72□□□□□ -0.37
CBX3-206ENST00000481057 URB2Q14146 1524 aaKnown RBP12.72□□□□□ -0.37
CBX3-206ENST00000481057 LILRB3O75022 631 aa12.71□□□□□ -0.37
CBX3-206ENST00000481057 Q3C1V9 767 aa12.71□□□□□ -0.37
CBX3-206ENST00000481057 TJAP1Q5JTD0 557 aa12.71□□□□□ -0.37
CBX3-206ENST00000481057 SCUBE3Q8IX30 993 aa12.71□□□□□ -0.37
CBX3-206ENST00000481057 FBXO31Q5XUX0 539 aaPredicted RBP12.7□□□□□ -0.38
CBX3-206ENST00000481057 CABLES1Q8TDN4 633 aa12.7□□□□□ -0.38
CBX3-206ENST00000481057 ZBTB3Q9H5J0 574 aa12.7□□□□□ -0.38
CBX3-206ENST00000481057 MTMR2Q13614 643 aa12.69□□□□□ -0.38
CBX3-206ENST00000481057 RNF19BQ6ZMZ0 732 aa12.69□□□□□ -0.38
CBX3-206ENST00000481057 IL21Q9HBE4 155 aa12.69□□□□□ -0.38
CBX3-206ENST00000481057 SALL2Q9Y467 1007 aaPredicted RBP12.69□□□□□ -0.38
CBX3-206ENST00000481057 ADGRL1O94910 1474 aa12.69□□□□□ -0.38
CBX3-206ENST00000481057 HRCP23327 699 aa12.68□□□□□ -0.38
CBX3-206ENST00000481057 PPP2R2DQ66LE6 453 aa12.68□□□□□ -0.38
CBX3-206ENST00000481057 THAP11Q96EK4 314 aa12.68□□□□□ -0.38
CBX3-206ENST00000481057 KIF13AQ9H1H9 1805 aa12.67□□□□□ -0.38
CBX3-206ENST00000481057 C6orf229H3BNL8 230 aa12.67□□□□□ -0.38
CBX3-206ENST00000481057 ZPR1O75312 459 aa12.67□□□□□ -0.38
CBX3-206ENST00000481057 BRICD5Q6PL45 260 aa12.67□□□□□ -0.38
CBX3-206ENST00000481057 SYMPKQ92797 1274 aaKnown RBP12.67□□□□□ -0.38
CBX3-206ENST00000481057 IFT140Q96RY7 1462 aa12.66□□□□□ -0.38
CBX3-206ENST00000481057 FMNL1O95466 1100 aaPredicted RBP12.66□□□□□ -0.38
CBX3-206ENST00000481057 SPDYE5A6NIY4 337 aa12.65□□□□□ -0.38
CBX3-206ENST00000481057 TLL1O43897 1013 aa12.65□□□□□ -0.38
CBX3-206ENST00000481057 RTL5Q5HYW3 569 aaPredicted RBP12.65□□□□□ -0.38
CBX3-206ENST00000481057 RETREG3Q86VR2 466 aa12.65□□□□□ -0.38
CBX3-206ENST00000481057 ZNF516Q92618 1163 aa12.65□□□□□ -0.38
CBX3-206ENST00000481057 GAPVD1Q14C86 1478 aa12.65□□□□□ -0.38
CBX3-206ENST00000481057 SPATA31D1Q6ZQQ2 1576 aa12.64□□□□□ -0.39
CBX3-206ENST00000481057 NUTM2BA6NNL0 878 aaPredicted RBP12.64□□□□□ -0.39
CBX3-206ENST00000481057 NUTM2EB1AL46 878 aaPredicted RBP12.64□□□□□ -0.39
CBX3-206ENST00000481057 ITGBL1O95965 494 aaPredicted RBP12.64□□□□□ -0.39
CBX3-206ENST00000481057 RFC5P40937 340 aa12.64□□□□□ -0.39
CBX3-206ENST00000481057 NUTM2DQ5VT03 806 aaPredicted RBP12.64□□□□□ -0.39
CBX3-206ENST00000481057 NUTM2AQ8IVF1 878 aaPredicted RBP12.64□□□□□ -0.39
CBX3-206ENST00000481057 USB1Q9BQ65 265 aaKnown RBP12.62□□□□□ -0.39
CBX3-206ENST00000481057 KDM6BO15054 1643 aa12.62□□□□□ -0.39
CBX3-206ENST00000481057 CLASP1Q7Z460 1538 aa12.62□□□□□ -0.39
CBX3-206ENST00000481057 EIF4G3O43432 1585 aaKnown RBP12.61□□□□□ -0.39
CBX3-206ENST00000481057 ADH1BP00325 375 aa12.61□□□□□ -0.39
CBX3-206ENST00000481057 SPSB2Q99619 263 aa12.61□□□□□ -0.39
CBX3-206ENST00000481057 GTF3C3Q9Y5Q9 886 aa12.61□□□□□ -0.39
CBX3-206ENST00000481057 CFAP99D6REC4 459 aa12.6□□□□□ -0.39
CBX3-206ENST00000481057 PRR7Q8TB68 274 aa12.6□□□□□ -0.39
CBX3-206ENST00000481057 KCNC4Q03721 635 aa12.59□□□□□ -0.39
CBX3-206ENST00000481057 MSS51Q4VC12 460 aa12.59□□□□□ -0.39
CBX3-206ENST00000481057 PEG3Q9GZU2 1588 aa12.57□□□□□ -0.4
CBX3-206ENST00000481057 FAM160A2Q8N612 972 aaPredicted RBP12.57□□□□□ -0.4
CBX3-206ENST00000481057 NKX2-3Q8TAU0 364 aa12.57□□□□□ -0.4
CBX3-206ENST00000481057 TMEM259Q4ZIN3 620 aa12.56□□□□□ -0.4
CBX3-206ENST00000481057 FAM69CQ0P6D2 419 aa12.55□□□□□ -0.4
CBX3-206ENST00000481057 PRDM9Q9NQV7 894 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms