RNA–Protein interactions for RNA: ENST00000481057.1

CBX3-206, Transcript of chromobox 3, humanhuman

TSL 2

Gene CBX3, Length 860 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-206ENST00000481057 AEBP2Q6ZN18 517 aaPredicted RBP30.78■■■□□ 2.52
CBX3-206ENST00000481057 CHIC1Q5VXU3 224 aa30.24■■■□□ 2.43
CBX3-206ENST00000481057 PHF23Q9BUL5 403 aaPredicted RBP26.62■■□□□ 1.85
CBX3-206ENST00000481057 SENP3Q9H4L4 574 aaPredicted RBP26.07■■□□□ 1.76
CBX3-206ENST00000481057 PLPPR3Q6T4P5 718 aa24.63■■□□□ 1.53
CBX3-206ENST00000481057 FOXD1Q16676 465 aa24.17■■□□□ 1.46
CBX3-206ENST00000481057 PPP6R1Q9UPN7 881 aa23.41■■□□□ 1.34
CBX3-206ENST00000481057 ADRA2BP18089 450 aa23.39■■□□□ 1.33
CBX3-206ENST00000481057 PIAS4Q8N2W9 510 aaPredicted RBP22.84■■□□□ 1.25
CBX3-206ENST00000481057 MSH5O43196 834 aa22.21■■□□□ 1.15
CBX3-206ENST00000481057 PPP4R3CPQ6ZMV5 832 aa21.73■■□□□ 1.07
CBX3-206ENST00000481057 KCNA4P22459 653 aa21.45■■□□□ 1.02
CBX3-206ENST00000481057 SCAF1Q9H7N4 1312 aaKnown RBP21.37■■□□□ 1.01
CBX3-206ENST00000481057 NCBP3Q53F19 620 aaKnown RBP21.2■□□□□ 0.98
CBX3-206ENST00000481057 MAPK8IP2Q13387 824 aaPredicted RBP21.16■□□□□ 0.98
CBX3-206ENST00000481057 CNKSR2Q8WXI2 1034 aa21.08■□□□□ 0.97
CBX3-206ENST00000481057 NPM3O75607 178 aaKnown RBP20.91■□□□□ 0.94
CBX3-206ENST00000481057 DMRT2Q9Y5R5 561 aa20.85■□□□□ 0.93
CBX3-206ENST00000481057 RNF216Q9NWF9 866 aaPredicted RBP20.62■□□□□ 0.89
CBX3-206ENST00000481057 HOXD11P31277 338 aaPredicted RBP20.5■□□□□ 0.87
CBX3-206ENST00000481057 SLC4A1APQ9BWU0 796 aaKnown RBP20.46■□□□□ 0.87
CBX3-206ENST00000481057 DNAJC5BQ9UF47 199 aa20.31■□□□□ 0.84
CBX3-206ENST00000481057 EHMT2Q96KQ7 1210 aa20.09■□□□□ 0.81
CBX3-206ENST00000481057 DCAF8L1A6NGE4 600 aa19.89■□□□□ 0.77
CBX3-206ENST00000481057 POTEDQ86YR6 584 aa19.89■□□□□ 0.77
CBX3-206ENST00000481057 CSRNP3Q8WYN3 585 aa19.78■□□□□ 0.76
CBX3-206ENST00000481057 ZBTB22O15209 634 aa19.77■□□□□ 0.76
CBX3-206ENST00000481057 SLC4A2P04920 1241 aa19.71■□□□□ 0.75
CBX3-206ENST00000481057 FOXD4L1Q9NU39 408 aa19.7■□□□□ 0.74
CBX3-206ENST00000481057 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.5■□□□□ 0.711e-10■■■■□ 26.3
CBX3-206ENST00000481057 MYCNP04198 464 aaPredicted RBP19.33■□□□□ 0.68
CBX3-206ENST00000481057 U3KPZ7 1027 aaPredicted RBP19.24■□□□□ 0.67
CBX3-206ENST00000481057 RNF39Q9H2S5 420 aa19.07■□□□□ 0.64
CBX3-206ENST00000481057 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.04■□□□□ 0.64
CBX3-206ENST00000481057 HNRNPUL2Q1KMD3 747 aaKnown RBP19.04■□□□□ 0.64
CBX3-206ENST00000481057 ATXN8OSP0DMR3 200 aa18.99■□□□□ 0.63
CBX3-206ENST00000481057 SAMD1Q6SPF0 538 aaPredicted RBP18.99■□□□□ 0.63
CBX3-206ENST00000481057 C1QBPQ07021 282 aaKnown RBP18.83■□□□□ 0.6
CBX3-206ENST00000481057 APLP2Q06481 763 aa18.8■□□□□ 0.6
CBX3-206ENST00000481057 ATF5Q9Y2D1 282 aaPredicted RBP18.79■□□□□ 0.6
CBX3-206ENST00000481057 SPINK5Q9NQ38 1064 aaPredicted RBP18.64■□□□□ 0.57
CBX3-206ENST00000481057 CAPN15O75808 1086 aa18.53■□□□□ 0.56
CBX3-206ENST00000481057 ZNF219Q9P2Y4 722 aaPredicted RBP18.52■□□□□ 0.56
CBX3-206ENST00000481057 TRHP20396 242 aaPredicted RBP18.49■□□□□ 0.55
CBX3-206ENST00000481057 CACNB1Q02641 598 aaPredicted RBP18.39■□□□□ 0.53
CBX3-206ENST00000481057 POLA2Q14181 598 aa18.23■□□□□ 0.51
CBX3-206ENST00000481057 ABCB7O75027 752 aa18.21■□□□□ 0.51
CBX3-206ENST00000481057 DSG3P32926 999 aa18.2■□□□□ 0.5
CBX3-206ENST00000481057 MKRN4PQ13434 485 aaPredicted RBP17.99■□□□□ 0.47
CBX3-206ENST00000481057 FBLN2P98095 1184 aa17.97■□□□□ 0.47
CBX3-206ENST00000481057 ZBTB12Q9Y330 459 aaPredicted RBP17.97■□□□□ 0.47
CBX3-206ENST00000481057 FKBP8Q14318 412 aa17.86■□□□□ 0.45
CBX3-206ENST00000481057 SPDYE4A6NLX3 237 aa17.66■□□□□ 0.42
CBX3-206ENST00000481057 OSCARQ8IYS5 282 aa17.64■□□□□ 0.41
CBX3-206ENST00000481057 SPDYE2BA6NHP3 402 aa17.51■□□□□ 0.39
CBX3-206ENST00000481057 SPDYE6P0CI01 402 aa17.51■□□□□ 0.39
CBX3-206ENST00000481057 SPDYE2Q495Y8 402 aa17.51■□□□□ 0.39
CBX3-206ENST00000481057 PROM2Q8N271 834 aa17.45■□□□□ 0.38
CBX3-206ENST00000481057 ZNF692Q9BU19 519 aaPredicted RBP17.44■□□□□ 0.38
CBX3-206ENST00000481057 SSUH2Q9Y2M2 353 aa17.41■□□□□ 0.38
CBX3-206ENST00000481057 RBM42Q9BTD8 480 aaKnown RBP17.33■□□□□ 0.36
CBX3-206ENST00000481057 PABPN1Q86U42 306 aaKnown RBP eCLIP17.23■□□□□ 0.35
CBX3-206ENST00000481057 AKT1S1Q96B36 256 aa17.16■□□□□ 0.34
CBX3-206ENST00000481057 FBXO3Q9UK99 471 aa17.16■□□□□ 0.34
CBX3-206ENST00000481057 REM2Q8IYK8 340 aaPredicted RBP16.99■□□□□ 0.31
CBX3-206ENST00000481057 STAG3Q9UJ98 1225 aa16.98■□□□□ 0.31
CBX3-206ENST00000481057 VASPP50552 380 aaPredicted RBP16.95■□□□□ 0.3
CBX3-206ENST00000481057 SPDYE1Q8NFV5 336 aaPredicted RBP16.93■□□□□ 0.3
CBX3-206ENST00000481057 CLEC11AQ9Y240 323 aa16.82■□□□□ 0.28
CBX3-206ENST00000481057 PITPNM1O00562 1244 aa16.81■□□□□ 0.28
CBX3-206ENST00000481057 IFNLR1Q8IU57 520 aaPredicted RBP16.73■□□□□ 0.27
CBX3-206ENST00000481057 PLCD3Q8N3E9 789 aa16.71■□□□□ 0.27
CBX3-206ENST00000481057 PRR29P0C7W0 189 aa16.7■□□□□ 0.26
CBX3-206ENST00000481057 MIER1Q8N108 512 aa16.69■□□□□ 0.26
CBX3-206ENST00000481057 AMER1Q5JTC6 1135 aaPredicted RBP16.63■□□□□ 0.25
CBX3-206ENST00000481057 PLEKHG5O94827 1062 aa16.6■□□□□ 0.25
CBX3-206ENST00000481057 RTN4Q9NQC3 1192 aaKnown RBP16.59■□□□□ 0.25
CBX3-206ENST00000481057 KLHL34Q8N239 644 aa16.57■□□□□ 0.24
CBX3-206ENST00000481057 CREBZFQ9NS37 354 aa16.57■□□□□ 0.24
CBX3-206ENST00000481057 CHRDL2Q6WN34 429 aa16.53■□□□□ 0.24
CBX3-206ENST00000481057 ZBTB47Q9UFB7 747 aaPredicted RBP16.52■□□□□ 0.24
CBX3-206ENST00000481057 SPOCK2Q92563 424 aa16.49■□□□□ 0.23
CBX3-206ENST00000481057 FXR2P51116 673 aaKnown RBP eCLIP16.45■□□□□ 0.224e-11■□□□□ 8.2
CBX3-206ENST00000481057 MNX1P50219 401 aaPredicted RBP16.43■□□□□ 0.22
CBX3-206ENST00000481057 CHADLQ6NUI6 762 aa16.42■□□□□ 0.22
CBX3-206ENST00000481057 PIP4P2Q8N4L2 257 aa16.38■□□□□ 0.21
CBX3-206ENST00000481057 PRKAR2AP13861 404 aaKnown RBP16.37■□□□□ 0.21
CBX3-206ENST00000481057 ABCC9O60706 1549 aa16.32■□□□□ 0.2
CBX3-206ENST00000481057 NUBP1P53384 320 aa16.3■□□□□ 0.2
CBX3-206ENST00000481057 DNAJC5Q9H3Z4 198 aa16.29■□□□□ 0.2
CBX3-206ENST00000481057 NPM1P06748 294 aaKnown RBP eCLIP16.28■□□□□ 0.2
CBX3-206ENST00000481057 FARP1Q9Y4F1 1045 aaPredicted RBP16.28■□□□□ 0.2
CBX3-206ENST00000481057 PKD2Q13563 968 aa16.25■□□□□ 0.19
CBX3-206ENST00000481057 RASEFQ8IZ41 740 aa16.18■□□□□ 0.18
CBX3-206ENST00000481057 CIZ1Q9ULV3 898 aaPredicted RBP16.18■□□□□ 0.18
CBX3-206ENST00000481057 GSE1Q14687 1217 aa16.15■□□□□ 0.18
CBX3-206ENST00000481057 FAM212AQ96EL1 285 aa16.15■□□□□ 0.18
CBX3-206ENST00000481057 DCAF8Q5TAQ9 597 aa16.11■□□□□ 0.17
CBX3-206ENST00000481057 ECM2O94769 699 aaPredicted RBP16.1■□□□□ 0.17
CBX3-206ENST00000481057 TRIM41Q8WV44 630 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms