RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	TULP4	Q9NRJ4	1543 aa		7.29	□□□□□ -1.24
HDAC6-223	ENST00000480525	CFAP70	Q5T0N1	1121 aa		7.29	□□□□□ -1.24
HDAC6-223	ENST00000480525	BRD4	O60885	1362 aa	Predicted RBP	7.29	□□□□□ -1.24
HDAC6-223	ENST00000480525	NUTM2D	Q5VT03	806 aa	Predicted RBP	7.28	□□□□□ -1.24
HDAC6-223	ENST00000480525	SIN3A	Q96ST3	1273 aa		7.28	□□□□□ -1.24
HDAC6-223	ENST00000480525	ROCK2	O75116	1388 aa	Known RBP	7.27	□□□□□ -1.25
HDAC6-223	ENST00000480525	C1orf167	Q5SNV9	1468 aa		7.27	□□□□□ -1.25
HDAC6-223	ENST00000480525	SHPRH	Q149N8	1683 aa		7.27	□□□□□ -1.25
HDAC6-223	ENST00000480525	COL16A1	Q07092	1604 aa	Predicted RBP	7.27	□□□□□ -1.25
HDAC6-223	ENST00000480525	USP32	Q8NFA0	1604 aa		7.27	□□□□□ -1.25
HDAC6-223	ENST00000480525	NINL	Q9Y2I6	1382 aa		7.26	□□□□□ -1.25
HDAC6-223	ENST00000480525	ATF3	P18847	181 aa		7.26	□□□□□ -1.25
HDAC6-223	ENST00000480525	SLAIN2	Q9P270	581 aa		7.26	□□□□□ -1.25
HDAC6-223	ENST00000480525	COL22A1	Q8NFW1	1626 aa	Predicted RBP	7.26	□□□□□ -1.25
HDAC6-223	ENST00000480525	RGPD8	O14715	1765 aa	Predicted RBP	7.25	□□□□□ -1.25
HDAC6-223	ENST00000480525	ATP7B	P35670	1465 aa		7.25	□□□□□ -1.25
HDAC6-223	ENST00000480525	PHLPP1	O60346	1717 aa		7.25	□□□□□ -1.25
HDAC6-223	ENST00000480525	USP54	Q70EL1	1684 aa		7.25	□□□□□ -1.25
HDAC6-223	ENST00000480525	CENPJ	Q9HC77	1338 aa	Predicted RBP	7.25	□□□□□ -1.25
HDAC6-223	ENST00000480525	UBAP1L	F5GYI3	381 aa		7.24	□□□□□ -1.25
HDAC6-223	ENST00000480525	NBPF8	Q3BBV2	869 aa		7.24	□□□□□ -1.25
HDAC6-223	ENST00000480525	TMEM132E	Q6IEE7	984 aa		7.24	□□□□□ -1.25
HDAC6-223	ENST00000480525	CCER1	Q8TC90	406 aa	Predicted RBP	7.24	□□□□□ -1.25
HDAC6-223	ENST00000480525	KDM2A	Q9Y2K7	1162 aa		7.24	□□□□□ -1.25
HDAC6-223	ENST00000480525	AKAP12	Q02952	1782 aa		7.23	□□□□□ -1.25
HDAC6-223	ENST00000480525	POLR3A	O14802	1390 aa	Predicted RBP	7.23	□□□□□ -1.25
HDAC6-223	ENST00000480525	ATAD2	Q6PL18	1390 aa		7.23	□□□□□ -1.25
HDAC6-223	ENST00000480525	PLEKHH1	Q9ULM0	1364 aa		7.23	□□□□□ -1.25
HDAC6-223	ENST00000480525	WASL	O00401	505 aa	Predicted RBP	7.23	□□□□□ -1.25
HDAC6-223	ENST00000480525	NEUROD1	Q13562	356 aa		7.23	□□□□□ -1.25
HDAC6-223	ENST00000480525	NBPF1	Q3BBV0	1214 aa		7.23	□□□□□ -1.25
HDAC6-223	ENST00000480525	PRAM1	Q96QH2	718 aa		7.23	□□□□□ -1.25
HDAC6-223	ENST00000480525	MED1	Q15648	1581 aa	Predicted RBP	7.23	□□□□□ -1.25
HDAC6-223	ENST00000480525	TRPM3	Q9HCF6	1732 aa	Predicted RBP	7.23	□□□□□ -1.25
HDAC6-223	ENST00000480525	SOS2	Q07890	1332 aa	Predicted RBP	7.23	□□□□□ -1.25
HDAC6-223	ENST00000480525	NPHP3	Q7Z494	1330 aa		7.23	□□□□□ -1.25
HDAC6-223	ENST00000480525	PXDN	Q92626	1479 aa		7.23	□□□□□ -1.25
HDAC6-223	ENST00000480525	POGK	Q9P215	609 aa		7.22	□□□□□ -1.25
HDAC6-223	ENST00000480525	ALS2	Q96Q42	1657 aa		7.22	□□□□□ -1.25
HDAC6-223	ENST00000480525	SBNO1	A3KN83	1393 aa		7.21	□□□□□ -1.25
HDAC6-223	ENST00000480525	MON2	Q7Z3U7	1717 aa		7.21	□□□□□ -1.25
HDAC6-223	ENST00000480525	PLEKHG3	A1L390	1219 aa		7.21	□□□□□ -1.26
HDAC6-223	ENST00000480525	BRINP3	Q76B58	766 aa		7.21	□□□□□ -1.26
HDAC6-223	ENST00000480525	C14orf37	Q86TY3	774 aa		7.21	□□□□□ -1.26
HDAC6-223	ENST00000480525	CARD11	Q9BXL7	1154 aa		7.21	□□□□□ -1.26
HDAC6-223	ENST00000480525	TRAK1	Q9UPV9	953 aa		7.21	□□□□□ -1.26
HDAC6-223	ENST00000480525	EVC2	Q86UK5	1308 aa		7.21	□□□□□ -1.26
HDAC6-223	ENST00000480525	MARF1	Q9Y4F3	1742 aa	Known RBP	7.21	□□□□□ -1.26
HDAC6-223	ENST00000480525	USP47	Q96K76	1375 aa		7.2	□□□□□ -1.26
HDAC6-223	ENST00000480525	JCAD	Q9P266	1359 aa		7.2	□□□□□ -1.26
HDAC6-223	ENST00000480525	NRK	Q7Z2Y5	1582 aa		7.2	□□□□□ -1.26
HDAC6-223	ENST00000480525	CDCA8	Q53HL2	280 aa		7.2	□□□□□ -1.26
HDAC6-223	ENST00000480525	WAPL	Q7Z5K2	1190 aa		7.2	□□□□□ -1.26
HDAC6-223	ENST00000480525	TESK2	Q96S53	571 aa		7.2	□□□□□ -1.26
HDAC6-223	ENST00000480525	CCDC61	Q9Y6R9	512 aa		7.2	□□□□□ -1.26
HDAC6-223	ENST00000480525	CRYBG1	Q9Y4K1	1723 aa		7.2	□□□□□ -1.26
HDAC6-223	ENST00000480525	SPATA31A6	Q5VVP1	1343 aa		7.2	□□□□□ -1.26
HDAC6-223	ENST00000480525	LRRC59	Q96AG4	307 aa	Known RBP	7.19	□□□□□ -1.26
HDAC6-223	ENST00000480525	STK26	Q9P289	416 aa		7.19	□□□□□ -1.26
HDAC6-223	ENST00000480525	ARHGEF10	O15013	1369 aa		7.19	□□□□□ -1.26
HDAC6-223	ENST00000480525	CPSF1	Q10570	1443 aa	Known RBP	7.18	□□□□□ -1.26
HDAC6-223	ENST00000480525	ABCA3	Q99758	1704 aa		7.18	□□□□□ -1.26
HDAC6-223	ENST00000480525	ABCC6	O95255	1503 aa		7.18	□□□□□ -1.26
HDAC6-223	ENST00000480525	ILDR1	Q86SU0	546 aa	Predicted RBP	7.18	□□□□□ -1.26
HDAC6-223	ENST00000480525	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	7.18	□□□□□ -1.26
HDAC6-223	ENST00000480525	TNS3	Q68CZ2	1445 aa		7.18	□□□□□ -1.26
HDAC6-223	ENST00000480525	SSH2	Q76I76	1423 aa		7.18	□□□□□ -1.26
HDAC6-223	ENST00000480525	MYOM1	P52179	1685 aa		7.17	□□□□□ -1.26
HDAC6-223	ENST00000480525	ZNF692	Q9BU19	519 aa	Predicted RBP	7.17	□□□□□ -1.26
HDAC6-223	ENST00000480525	PHF8	Q9UPP1	1060 aa		7.17	□□□□□ -1.26
HDAC6-223	ENST00000480525	NWD2	Q9ULI1	1742 aa		7.17	□□□□□ -1.26
HDAC6-223	ENST00000480525	PRR36	Q9H6K5	1346 aa		7.17	□□□□□ -1.26
HDAC6-223	ENST00000480525	PHRF1	Q9P1Y6	1649 aa	Known RBP	7.16	□□□□□ -1.26
HDAC6-223	ENST00000480525	ZEB1	P37275	1124 aa	Predicted RBP	7.16	□□□□□ -1.26
HDAC6-223	ENST00000480525	PSME1	Q06323	249 aa		7.16	□□□□□ -1.26
HDAC6-223	ENST00000480525	NUDT16	Q96DE0	195 aa	Known RBP	7.16	□□□□□ -1.26
HDAC6-223	ENST00000480525	CDK19	Q9BWU1	502 aa		7.16	□□□□□ -1.26
HDAC6-223	ENST00000480525	PNPLA6	Q8IY17	1366 aa		7.16	□□□□□ -1.26
HDAC6-223	ENST00000480525	USP6	P35125	1406 aa		7.16	□□□□□ -1.26
HDAC6-223	ENST00000480525	PPIP5K1	Q6PFW1	1433 aa		7.16	□□□□□ -1.26
HDAC6-223	ENST00000480525	ST20-MTHFS	A0A0A6YYL1	179 aa		7.15	□□□□□ -1.26
HDAC6-223	ENST00000480525	HSPA1L	P34931	641 aa		7.15	□□□□□ -1.26
HDAC6-223	ENST00000480525	EIF4G2	P78344	907 aa	Known RBP eCLIP	7.15	□□□□□ -1.26	2e-9	■■■■■ 73
HDAC6-223	ENST00000480525	TMF1	P82094	1093 aa		7.15	□□□□□ -1.26
HDAC6-223	ENST00000480525	SPATA31A3	Q5VYP0	1347 aa		7.15	□□□□□ -1.26
HDAC6-223	ENST00000480525	MINK1	Q8N4C8	1332 aa	Predicted RBP	7.15	□□□□□ -1.26
HDAC6-223	ENST00000480525	TTC21A	Q8NDW8	1320 aa		7.15	□□□□□ -1.26
HDAC6-223	ENST00000480525	CD163L1	Q9NR16	1453 aa		7.15	□□□□□ -1.27
HDAC6-223	ENST00000480525	SLIT3	O75094	1523 aa		7.14	□□□□□ -1.27
HDAC6-223	ENST00000480525	ESCO1	Q5FWF5	840 aa		7.14	□□□□□ -1.27
HDAC6-223	ENST00000480525	EDC4	Q6P2E9	1401 aa	Known RBP	7.14	□□□□□ -1.27
HDAC6-223	ENST00000480525	USP31	Q70CQ4	1352 aa		7.14	□□□□□ -1.27
HDAC6-223	ENST00000480525	ANKRD36B	Q8N2N9	1353 aa		7.14	□□□□□ -1.27
HDAC6-223	ENST00000480525	RBM33	Q96EV2	1170 aa	Known RBP	7.14	□□□□□ -1.27
HDAC6-223	ENST00000480525	ORAI2	Q96SN7	254 aa		7.14	□□□□□ -1.27
HDAC6-223	ENST00000480525	ANKRD26	Q9UPS8	1709 aa		7.13	□□□□□ -1.27
HDAC6-223	ENST00000480525	PIK3C2A	O00443	1686 aa		7.13	□□□□□ -1.27
HDAC6-223	ENST00000480525	PIP4K2B	P78356	416 aa		7.13	□□□□□ -1.27
HDAC6-223	ENST00000480525	COL14A1	Q05707	1796 aa	Known RBP	7.13	□□□□□ -1.27
HDAC6-223	ENST00000480525	CPD	O75976	1380 aa		7.12	□□□□□ -1.27

Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms