RNA–Protein interactions for RNA: ENST00000479896.1

PTPRE-208, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 2

Gene PTPRE, Length 5,736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-208ENST00000479896 CRBNQ96SW2 442 aa15.04■□□□□ -0
PTPRE-208ENST00000479896 SMC3Q9UQE7 1217 aa15.04■□□□□ -0
PTPRE-208ENST00000479896 PLIN1O60240 522 aa15.04■□□□□ -0
PTPRE-208ENST00000479896 SLC3A2P08195 630 aaKnown RBP15.04■□□□□ -0
PTPRE-208ENST00000479896 PROSER2Q86WR7 435 aaPredicted RBP15.04■□□□□ -0
PTPRE-208ENST00000479896 UBTFL1P0CB47 393 aaPredicted RBP15.04■□□□□ -0
PTPRE-208ENST00000479896 HMOX1P09601 288 aa15.03■□□□□ -0
PTPRE-208ENST00000479896 PLEKHO1Q53GL0 409 aaPredicted RBP15.03■□□□□ -0
PTPRE-208ENST00000479896 ESCO1Q5FWF5 840 aa15.03■□□□□ -0
PTPRE-208ENST00000479896 FBXO3Q9UK99 471 aa15.03■□□□□ -0
PTPRE-208ENST00000479896 EPS15P42566 896 aa15.03■□□□□ -0
PTPRE-208ENST00000479896 SART3Q15020 963 aaKnown RBP15.03■□□□□ -0
PTPRE-208ENST00000479896 RBM42Q9BTD8 480 aaKnown RBP15.03■□□□□ -0
PTPRE-208ENST00000479896 ATAD2BQ9ULI0 1458 aa15.03■□□□□ -0
PTPRE-208ENST00000479896 TMEM132AQ24JP5 1023 aa15.02■□□□□ -0
PTPRE-208ENST00000479896 WIZO95785 1651 aa15.02■□□□□ -0
PTPRE-208ENST00000479896 VPS37CA5D8V6 355 aaPredicted RBP15.01□□□□□ -0.01
PTPRE-208ENST00000479896 CCDC73Q6ZRK6 1079 aa15.01□□□□□ -0.01
PTPRE-208ENST00000479896 GAS2L2Q8NHY3 880 aa15.01□□□□□ -0.01
PTPRE-208ENST00000479896 GAPVD1Q14C86 1478 aa15.01□□□□□ -0.01
PTPRE-208ENST00000479896 ABTB2Q8N961 1025 aa15.01□□□□□ -0.01
PTPRE-208ENST00000479896 PPP1R1BQ9UD71 204 aaPredicted RBP15.01□□□□□ -0.01
PTPRE-208ENST00000479896 NAP1L1P55209 391 aaKnown RBP15.01□□□□□ -0.01
PTPRE-208ENST00000479896 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15□□□□□ -0.01
PTPRE-208ENST00000479896 SASS6Q6UVJ0 657 aa15□□□□□ -0.01
PTPRE-208ENST00000479896 PSMA5P28066 241 aa14.99□□□□□ -0.01
PTPRE-208ENST00000479896 FOSBP53539 338 aa14.99□□□□□ -0.01
PTPRE-208ENST00000479896 GNL3LQ9NVN8 582 aaKnown RBP14.99□□□□□ -0.01
PTPRE-208ENST00000479896 CCDC30Q5VVM6 783 aa14.99□□□□□ -0.01
PTPRE-208ENST00000479896 STRN4Q9NRL3 753 aa14.99□□□□□ -0.01
PTPRE-208ENST00000479896 FAM177BA6PVY3 158 aa14.99□□□□□ -0.01
PTPRE-208ENST00000479896 PRKRIP1Q9H875 184 aaPredicted RBP14.99□□□□□ -0.01
PTPRE-208ENST00000479896 CABP2Q9NPB3 220 aa14.99□□□□□ -0.01
PTPRE-208ENST00000479896 MTMR7Q9Y216 660 aa14.99□□□□□ -0.01
PTPRE-208ENST00000479896 EXOC6Q8TAG9 804 aa14.99□□□□□ -0.01
PTPRE-208ENST00000479896 ZNF592Q92610 1267 aa14.99□□□□□ -0.01
PTPRE-208ENST00000479896 TATP17735 454 aaPredicted RBP14.99□□□□□ -0.01
PTPRE-208ENST00000479896 CDR1P51861 262 aa14.98□□□□□ -0.01
PTPRE-208ENST00000479896 TXNDC2Q86VQ3 553 aa14.98□□□□□ -0.01
PTPRE-208ENST00000479896 PDE4AP27815 886 aa14.98□□□□□ -0.01
PTPRE-208ENST00000479896 HOMER1Q86YM7 354 aa14.98□□□□□ -0.01
PTPRE-208ENST00000479896 CNTROBQ8N137 903 aa14.98□□□□□ -0.01
PTPRE-208ENST00000479896 GGNBP2Q9H3C7 697 aa14.98□□□□□ -0.01
PTPRE-208ENST00000479896 ZBED9Q6R2W3 1325 aa14.98□□□□□ -0.01
PTPRE-208ENST00000479896 OLFM4Q6UX06 510 aa14.98□□□□□ -0.01
PTPRE-208ENST00000479896 RDXP35241 583 aaKnown RBP14.97□□□□□ -0.01
PTPRE-208ENST00000479896 FSD1Q9BTV5 496 aa14.97□□□□□ -0.01
PTPRE-208ENST00000479896 CUX1P39880 1505 aa14.97□□□□□ -0.01
PTPRE-208ENST00000479896 OFD1O75665 1012 aa14.97□□□□□ -0.01
PTPRE-208ENST00000479896 ZFYVE27Q5T4F4 411 aa14.96□□□□□ -0.01
PTPRE-208ENST00000479896 AAMPQ13685 434 aa14.96□□□□□ -0.01
PTPRE-208ENST00000479896 FYCO1Q9BQS8 1478 aa14.95□□□□□ -0.02
PTPRE-208ENST00000479896 RRBP1Q9P2E9 1410 aaKnown RBP14.95□□□□□ -0.02
PTPRE-208ENST00000479896 GNAI3P08754 354 aa14.95□□□□□ -0.02
PTPRE-208ENST00000479896 CDK5RAP3Q96JB5 506 aa14.95□□□□□ -0.02
PTPRE-208ENST00000479896 HSP90AB2PQ58FF8 381 aa14.95□□□□□ -0.02
PTPRE-208ENST00000479896 ARHGAP5Q13017 1502 aa14.95□□□□□ -0.02
PTPRE-208ENST00000479896 NUTM2BA6NNL0 878 aaPredicted RBP14.95□□□□□ -0.02
PTPRE-208ENST00000479896 NUTM2EB1AL46 878 aaPredicted RBP14.95□□□□□ -0.02
PTPRE-208ENST00000479896 PATL2C9JE40 543 aaKnown RBP14.95□□□□□ -0.02
PTPRE-208ENST00000479896 HMGB2P26583 209 aaKnown RBP14.95□□□□□ -0.02
PTPRE-208ENST00000479896 NUTM2AQ8IVF1 878 aaPredicted RBP14.95□□□□□ -0.02
PTPRE-208ENST00000479896 THEMISQ8N1K5 641 aaPredicted RBP14.95□□□□□ -0.02
PTPRE-208ENST00000479896 CNNM1Q9NRU3 951 aa14.95□□□□□ -0.02
PTPRE-208ENST00000479896 PRDM2Q13029 1718 aa14.95□□□□□ -0.02
PTPRE-208ENST00000479896 TTC39AQ5SRH9 613 aa14.95□□□□□ -0.02
PTPRE-208ENST00000479896 HIP1O00291 1037 aa14.94□□□□□ -0.02
PTPRE-208ENST00000479896 RUFY1Q96T51 708 aa14.94□□□□□ -0.02
PTPRE-208ENST00000479896 NUCB2P80303 420 aa14.94□□□□□ -0.02
PTPRE-208ENST00000479896 CCDC173Q0VFZ6 552 aa14.94□□□□□ -0.02
PTPRE-208ENST00000479896 NAT10Q9H0A0 1025 aaKnown RBP14.94□□□□□ -0.02
PTPRE-208ENST00000479896 ERC1Q8IUD2 1116 aa14.94□□□□□ -0.02
PTPRE-208ENST00000479896 CLASRPQ8N2M8 674 aaKnown RBP14.94□□□□□ -0.02
PTPRE-208ENST00000479896 SLC4A3P48751 1232 aa14.94□□□□□ -0.02
PTPRE-208ENST00000479896 PAF1Q8N7H5 531 aa14.94□□□□□ -0.02
PTPRE-208ENST00000479896 DNAJC2Q99543 621 aaKnown RBP14.94□□□□□ -0.02
PTPRE-208ENST00000479896 AK7Q96M32 723 aa14.93□□□□□ -0.02
PTPRE-208ENST00000479896 CCDC158Q5M9N0 1113 aa14.93□□□□□ -0.02
PTPRE-208ENST00000479896 CDC45O75419 566 aa14.93□□□□□ -0.02
PTPRE-208ENST00000479896 CABP4P57796 275 aa14.93□□□□□ -0.02
PTPRE-208ENST00000479896 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.93□□□□□ -0.02
PTPRE-208ENST00000479896 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.92□□□□□ -0.02
PTPRE-208ENST00000479896 TOM1L2Q6ZVM7 507 aa14.92□□□□□ -0.02
PTPRE-208ENST00000479896 SPG7Q9UQ90 795 aa14.92□□□□□ -0.02
PTPRE-208ENST00000479896 TXLNAP40222 546 aa14.91□□□□□ -0.02
PTPRE-208ENST00000479896 CHMP5Q9NZZ3 219 aa14.91□□□□□ -0.02
PTPRE-208ENST00000479896 TMEM132EQ6IEE7 984 aa14.91□□□□□ -0.02
PTPRE-208ENST00000479896 RRP12Q5JTH9 1297 aaKnown RBP14.91□□□□□ -0.02
PTPRE-208ENST00000479896 FGD5Q6ZNL6 1462 aa14.91□□□□□ -0.02
PTPRE-208ENST00000479896 KRT18P05783 430 aaKnown RBP14.91□□□□□ -0.02
PTPRE-208ENST00000479896 SMARCA4P51532 1647 aa14.91□□□□□ -0.02
PTPRE-208ENST00000479896 PNISRQ8TF01 805 aaKnown RBP14.9□□□□□ -0.02
PTPRE-208ENST00000479896 LNPKQ9C0E8 428 aa14.9□□□□□ -0.02
PTPRE-208ENST00000479896 ACBD3Q9H3P7 528 aa14.9□□□□□ -0.02
PTPRE-208ENST00000479896 SURF6O75683 361 aaKnown RBP14.89□□□□□ -0.03
PTPRE-208ENST00000479896 MYO6Q9UM54 1294 aa14.89□□□□□ -0.03
PTPRE-208ENST00000479896 SYCP1Q15431 976 aa14.89□□□□□ -0.03
PTPRE-208ENST00000479896 TEX35Q5T0J7 233 aa14.89□□□□□ -0.03
PTPRE-208ENST00000479896 ATP2B2Q01814 1243 aa14.88□□□□□ -0.03
PTPRE-208ENST00000479896 MAGEC2Q9UBF1 373 aaPredicted RBP14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms