RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 PKDCCQ504Y2 493 aa9.65□□□□□ -0.86
SF3B1-209ENST00000479532 EPRSP07814 1512 aaKnown RBP9.65□□□□□ -0.86
SF3B1-209ENST00000479532 ATP10BO94823 1461 aa9.65□□□□□ -0.87
SF3B1-209ENST00000479532 ASXL2Q76L83 1435 aa9.64□□□□□ -0.87
SF3B1-209ENST00000479532 CDK13Q14004 1512 aaKnown RBP9.63□□□□□ -0.87
SF3B1-209ENST00000479532 LRRIQ1Q96JM4 1722 aa9.63□□□□□ -0.87
SF3B1-209ENST00000479532 PLEKHD1A6NEE1 506 aa9.63□□□□□ -0.87
SF3B1-209ENST00000479532 EPAS1Q99814 870 aa9.63□□□□□ -0.87
SF3B1-209ENST00000479532 WDR7Q9Y4E6 1490 aa9.63□□□□□ -0.87
SF3B1-209ENST00000479532 E2F4Q16254 413 aa9.62□□□□□ -0.87
SF3B1-209ENST00000479532 ZNF516Q92618 1163 aa9.62□□□□□ -0.87
SF3B1-209ENST00000479532 RBM33Q96EV2 1170 aaKnown RBP9.62□□□□□ -0.87
SF3B1-209ENST00000479532 CFAP43Q8NDM7 1665 aa9.61□□□□□ -0.87
SF3B1-209ENST00000479532 TREML4Q6UXN2 200 aa9.6□□□□□ -0.87
SF3B1-209ENST00000479532 ARHGEF1Q92888 912 aaKnown RBP9.6□□□□□ -0.87
SF3B1-209ENST00000479532 EMILIN3Q9NT22 766 aa9.6□□□□□ -0.87
SF3B1-209ENST00000479532 ABCC10Q5T3U5 1492 aa9.59□□□□□ -0.87
SF3B1-209ENST00000479532 DIP2BQ9P265 1576 aa9.59□□□□□ -0.87
SF3B1-209ENST00000479532 POTECB2RU33 542 aa9.59□□□□□ -0.87
SF3B1-209ENST00000479532 SAMD7Q7Z3H4 446 aa9.59□□□□□ -0.87
SF3B1-209ENST00000479532 KIF14Q15058 1648 aa9.59□□□□□ -0.87
SF3B1-209ENST00000479532 TIAM1Q13009 1591 aa9.58□□□□□ -0.88
SF3B1-209ENST00000479532 MAP3K1Q13233 1512 aa9.58□□□□□ -0.88
SF3B1-209ENST00000479532 DGAT1O75907 488 aa9.58□□□□□ -0.88
SF3B1-209ENST00000479532 FAM69CQ0P6D2 419 aa9.58□□□□□ -0.88
SF3B1-209ENST00000479532 MTUS2Q5JR59 1369 aa9.58□□□□□ -0.88
SF3B1-209ENST00000479532 KIF13AQ9H1H9 1805 aa9.58□□□□□ -0.88
SF3B1-209ENST00000479532 GLI2P10070 1586 aa9.58□□□□□ -0.88
SF3B1-209ENST00000479532 TROQ12816 1431 aaPredicted RBP9.57□□□□□ -0.88
SF3B1-209ENST00000479532 EHBP1L1Q8N3D4 1523 aa9.57□□□□□ -0.88
SF3B1-209ENST00000479532 MFSD10Q14728 455 aa9.57□□□□□ -0.88
SF3B1-209ENST00000479532 HDGFP51858 240 aaKnown RBP9.56□□□□□ -0.88
SF3B1-209ENST00000479532 NKX2-3Q8TAU0 364 aa9.56□□□□□ -0.88
SF3B1-209ENST00000479532 LMOD2Q6P5Q4 547 aa9.55□□□□□ -0.88
SF3B1-209ENST00000479532 TMUB1Q9BVT8 246 aa9.55□□□□□ -0.88
SF3B1-209ENST00000479532 SUPT6HQ7KZ85 1726 aaKnown RBP9.55□□□□□ -0.88
SF3B1-209ENST00000479532 ABCA9Q8IUA7 1624 aa9.55□□□□□ -0.88
SF3B1-209ENST00000479532 MAP3K4Q9Y6R4 1608 aa9.54□□□□□ -0.88
SF3B1-209ENST00000479532 RNF40O75150 1001 aa9.54□□□□□ -0.88
SF3B1-209ENST00000479532 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.54□□□□□ -0.88
SF3B1-209ENST00000479532 MYO5CQ9NQX4 1742 aa9.53□□□□□ -0.88
SF3B1-209ENST00000479532 TSPOAP1O95153 1857 aa9.53□□□□□ -0.88
SF3B1-209ENST00000479532 TSKSQ9UJT2 592 aa9.53□□□□□ -0.88
SF3B1-209ENST00000479532 LRRC9Q6ZRR7 1453 aa9.53□□□□□ -0.88
SF3B1-209ENST00000479532 TEX14Q8IWB6 1497 aa9.53□□□□□ -0.88
SF3B1-209ENST00000479532 MAGI3Q5TCQ9 1506 aa9.52□□□□□ -0.88
SF3B1-209ENST00000479532 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.52□□□□□ -0.88
SF3B1-209ENST00000479532 SMAPO00193 183 aa9.52□□□□□ -0.89
SF3B1-209ENST00000479532 TULP1O00294 542 aaPredicted RBP9.52□□□□□ -0.89
SF3B1-209ENST00000479532 SLC19A1P41440 591 aa9.52□□□□□ -0.89
SF3B1-209ENST00000479532 CD109Q6YHK3 1445 aa9.52□□□□□ -0.89
SF3B1-209ENST00000479532 CFAP74Q9C0B2 1584 aa9.52□□□□□ -0.89
SF3B1-209ENST00000479532 SEMA3EO15041 775 aa9.51□□□□□ -0.89
SF3B1-209ENST00000479532 ITSN2Q9NZM3 1697 aa9.51□□□□□ -0.89
SF3B1-209ENST00000479532 TTC37Q6PGP7 1564 aa9.5□□□□□ -0.89
SF3B1-209ENST00000479532 TRIM67Q6ZTA4 783 aa9.5□□□□□ -0.89
SF3B1-209ENST00000479532 FAM187AA6NFU0 413 aa9.49□□□□□ -0.89
SF3B1-209ENST00000479532 COPS2P61201 443 aa9.49□□□□□ -0.89
SF3B1-209ENST00000479532 STK17AQ9UEE5 414 aa9.49□□□□□ -0.89
SF3B1-209ENST00000479532 PREX2Q70Z35 1606 aa9.49□□□□□ -0.89
SF3B1-209ENST00000479532 CCNB3Q8WWL7 1395 aa9.49□□□□□ -0.89
SF3B1-209ENST00000479532 ARHGAP5Q13017 1502 aa9.48□□□□□ -0.89
SF3B1-209ENST00000479532 ARAP3Q8WWN8 1544 aa9.48□□□□□ -0.89
SF3B1-209ENST00000479532 TESPA1A2RU30 521 aaPredicted RBP9.48□□□□□ -0.89
SF3B1-209ENST00000479532 APLP1P51693 650 aa9.48□□□□□ -0.89
SF3B1-209ENST00000479532 CAMK2BQ13554 666 aa9.48□□□□□ -0.89
SF3B1-209ENST00000479532 DDX12PQ92771 950 aa9.48□□□□□ -0.89
SF3B1-209ENST00000479532 CDC42BPAQ5VT25 1732 aa9.48□□□□□ -0.89
SF3B1-209ENST00000479532 NCOA2Q15596 1464 aa9.47□□□□□ -0.89
SF3B1-209ENST00000479532 MAP3K7O43318 606 aa9.47□□□□□ -0.89
SF3B1-209ENST00000479532 PPRC1Q5VV67 1664 aaKnown RBP9.47□□□□□ -0.89
SF3B1-209ENST00000479532 PLCH2O75038 1416 aa9.47□□□□□ -0.89
SF3B1-209ENST00000479532 KANK4Q5T7N3 995 aaPredicted RBP9.46□□□□□ -0.9
SF3B1-209ENST00000479532 LCE2AQ5TA79 106 aaPredicted RBP9.46□□□□□ -0.9
SF3B1-209ENST00000479532 EFCAB2Q5VUJ9 269 aa9.46□□□□□ -0.9
SF3B1-209ENST00000479532 ARIH1Q9Y4X5 557 aaPredicted RBP9.46□□□□□ -0.9
SF3B1-209ENST00000479532 PHLDB1Q86UU1 1377 aa9.46□□□□□ -0.9
SF3B1-209ENST00000479532 FANCAO15360 1455 aa9.46□□□□□ -0.9
SF3B1-209ENST00000479532 NEO1Q92859 1461 aa9.46□□□□□ -0.9
SF3B1-209ENST00000479532 CDC42BPBQ9Y5S2 1711 aa9.45□□□□□ -0.9
SF3B1-209ENST00000479532 NECTIN2Q92692 538 aa9.45□□□□□ -0.9
SF3B1-209ENST00000479532 CDCA7LQ96GN5 454 aa9.45□□□□□ -0.9
SF3B1-209ENST00000479532 WFS1O76024 890 aa9.44□□□□□ -0.9
SF3B1-209ENST00000479532 PRR20EP86478 221 aa9.44□□□□□ -0.9
SF3B1-209ENST00000479532 PRR20CP86479 221 aa9.44□□□□□ -0.9
SF3B1-209ENST00000479532 PRR20DP86480 221 aa9.44□□□□□ -0.9
SF3B1-209ENST00000479532 PRR20BP86481 221 aa9.44□□□□□ -0.9
SF3B1-209ENST00000479532 PRR20AP86496 221 aa9.44□□□□□ -0.9
SF3B1-209ENST00000479532 ZNF598Q86UK7 904 aaKnown RBP9.44□□□□□ -0.9
SF3B1-209ENST00000479532 CFDP1Q9UEE9 299 aaPredicted RBP9.44□□□□□ -0.9
SF3B1-209ENST00000479532 PNMA3Q9UL41 463 aa9.44□□□□□ -0.9
SF3B1-209ENST00000479532 GPATCH8Q9UKJ3 1502 aaKnown RBP9.44□□□□□ -0.9
SF3B1-209ENST00000479532 KDM6BO15054 1643 aa9.44□□□□□ -0.9
SF3B1-209ENST00000479532 PLEKHH2Q8IVE3 1493 aa9.43□□□□□ -0.9
SF3B1-209ENST00000479532 NBPF26B4DH59 902 aa9.43□□□□□ -0.9
SF3B1-209ENST00000479532 DPYSL4O14531 572 aa9.43□□□□□ -0.9
SF3B1-209ENST00000479532 TSR1Q2NL82 804 aaKnown RBP9.43□□□□□ -0.9
SF3B1-209ENST00000479532 SPRYD7Q5W111 196 aa9.43□□□□□ -0.9
SF3B1-209ENST00000479532 TATDN2Q93075 761 aa9.43□□□□□ -0.9
SF3B1-209ENST00000479532 MYOM3Q5VTT5 1437 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms