RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 EEA1Q15075 1411 aa11.41□□□□□ -0.58
CCDC88A-213ENST00000476903 UACAQ9BZF9 1416 aa11.41□□□□□ -0.58
CCDC88A-213ENST00000476903 ZPR1O75312 459 aa11.4□□□□□ -0.58
CCDC88A-213ENST00000476903 SLF2Q8IX21 1173 aa11.39□□□□□ -0.59
CCDC88A-213ENST00000476903 TSPOAP1O95153 1857 aa11.38□□□□□ -0.59
CCDC88A-213ENST00000476903 GGCXP38435 758 aa11.37□□□□□ -0.59
CCDC88A-213ENST00000476903 NECTIN2Q92692 538 aa11.37□□□□□ -0.59
CCDC88A-213ENST00000476903 ZCCHC11Q5TAX3 1644 aaKnown RBP11.37□□□□□ -0.59
CCDC88A-213ENST00000476903 PLB1Q6P1J6 1458 aa11.37□□□□□ -0.59
CCDC88A-213ENST00000476903 ASXL2Q76L83 1435 aa11.36□□□□□ -0.59
CCDC88A-213ENST00000476903 KDM5BQ9UGL1 1544 aa11.36□□□□□ -0.59
CCDC88A-213ENST00000476903 RNF223E7ERA6 249 aa11.36□□□□□ -0.59
CCDC88A-213ENST00000476903 SPRYD3Q8NCJ5 442 aa11.34□□□□□ -0.59
CCDC88A-213ENST00000476903 GLI2P10070 1586 aa11.33□□□□□ -0.6
CCDC88A-213ENST00000476903 ABCA8O94911 1581 aa11.33□□□□□ -0.6
CCDC88A-213ENST00000476903 KIF21BO75037 1637 aa11.32□□□□□ -0.6
CCDC88A-213ENST00000476903 SLC19A1P41440 591 aa11.32□□□□□ -0.6
CCDC88A-213ENST00000476903 BLOC1S3Q6QNY0 202 aa11.32□□□□□ -0.6
CCDC88A-213ENST00000476903 SAMD9Q5K651 1589 aa11.32□□□□□ -0.6
CCDC88A-213ENST00000476903 MYT1Q01538 1121 aa11.31□□□□□ -0.6
CCDC88A-213ENST00000476903 FAM9AQ8IZU1 332 aaPredicted RBP11.31□□□□□ -0.6
CCDC88A-213ENST00000476903 KDM6BO15054 1643 aa11.31□□□□□ -0.6
CCDC88A-213ENST00000476903 SPRYD7Q5W111 196 aa11.3□□□□□ -0.6
CCDC88A-213ENST00000476903 PCDHB3Q9Y5E6 796 aa11.3□□□□□ -0.6
CCDC88A-213ENST00000476903 PPRC1Q5VV67 1664 aaKnown RBP11.3□□□□□ -0.6
CCDC88A-213ENST00000476903 EPRSP07814 1512 aaKnown RBP11.3□□□□□ -0.6
CCDC88A-213ENST00000476903 MAP3K4Q9Y6R4 1608 aa11.29□□□□□ -0.6
CCDC88A-213ENST00000476903 POTECB2RU33 542 aa11.29□□□□□ -0.6
CCDC88A-213ENST00000476903 WDR7Q9Y4E6 1490 aa11.28□□□□□ -0.6
CCDC88A-213ENST00000476903 TLL1O43897 1013 aa11.28□□□□□ -0.6
CCDC88A-213ENST00000476903 PRR20EP86478 221 aa11.28□□□□□ -0.6
CCDC88A-213ENST00000476903 PRR20CP86479 221 aa11.28□□□□□ -0.6
CCDC88A-213ENST00000476903 PRR20DP86480 221 aa11.28□□□□□ -0.6
CCDC88A-213ENST00000476903 PRR20BP86481 221 aa11.28□□□□□ -0.6
CCDC88A-213ENST00000476903 PRR20AP86496 221 aa11.28□□□□□ -0.6
CCDC88A-213ENST00000476903 LIAT1Q6ZQX7 453 aa11.27□□□□□ -0.61
CCDC88A-213ENST00000476903 ZNF598Q86UK7 904 aaKnown RBP11.27□□□□□ -0.61
CCDC88A-213ENST00000476903 P3H3Q8IVL6 736 aa11.27□□□□□ -0.61
CCDC88A-213ENST00000476903 PRR14Q9BWN1 585 aa11.27□□□□□ -0.61
CCDC88A-213ENST00000476903 WDR70Q9NW82 654 aa11.27□□□□□ -0.61
CCDC88A-213ENST00000476903 DGAT1O75907 488 aa11.26□□□□□ -0.61
CCDC88A-213ENST00000476903 RAPGEF6Q8TEU7 1601 aa11.25□□□□□ -0.61
CCDC88A-213ENST00000476903 PPEF1O14829 653 aaPredicted RBP11.25□□□□□ -0.61
CCDC88A-213ENST00000476903 ANKLE1Q8NAG6 615 aa11.25□□□□□ -0.61
CCDC88A-213ENST00000476903 TEX14Q8IWB6 1497 aa11.25□□□□□ -0.61
CCDC88A-213ENST00000476903 EFCAB5A4FU69 1503 aa11.24□□□□□ -0.61
CCDC88A-213ENST00000476903 CFAP43Q8NDM7 1665 aa11.24□□□□□ -0.61
CCDC88A-213ENST00000476903 GDF9O60383 454 aa11.23□□□□□ -0.61
CCDC88A-213ENST00000476903 RANGAP1P46060 587 aaPredicted RBP11.23□□□□□ -0.61
CCDC88A-213ENST00000476903 TMEM134Q9H6X4 195 aa11.23□□□□□ -0.61
CCDC88A-213ENST00000476903 ACTN4O43707 911 aaKnown RBP11.22□□□□□ -0.61
CCDC88A-213ENST00000476903 S1PR4O95977 384 aa11.22□□□□□ -0.61
CCDC88A-213ENST00000476903 SLC4A3P48751 1232 aa11.22□□□□□ -0.61
CCDC88A-213ENST00000476903 PKDCCQ504Y2 493 aa11.22□□□□□ -0.61
CCDC88A-213ENST00000476903 ATP10BO94823 1461 aa11.21□□□□□ -0.61
CCDC88A-213ENST00000476903 FHOD3Q2V2M9 1422 aa11.21□□□□□ -0.61
CCDC88A-213ENST00000476903 DNAJB2P25686 324 aa11.21□□□□□ -0.61
CCDC88A-213ENST00000476903 MLLT3P42568 568 aaPredicted RBP11.21□□□□□ -0.61
CCDC88A-213ENST00000476903 PTGDRQ13258 359 aa11.21□□□□□ -0.61
CCDC88A-213ENST00000476903 LCE2AQ5TA79 106 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-213ENST00000476903 ADGRG1Q9Y653 693 aa11.2□□□□□ -0.62
CCDC88A-213ENST00000476903 CD109Q6YHK3 1445 aa11.19□□□□□ -0.62
CCDC88A-213ENST00000476903 ARID3CA6NKF2 412 aa11.19□□□□□ -0.62
CCDC88A-213ENST00000476903 PLA2G2CQ5R387 149 aa11.19□□□□□ -0.62
CCDC88A-213ENST00000476903 ZNF697Q5TEC3 545 aa11.19□□□□□ -0.62
CCDC88A-213ENST00000476903 MAGI3Q5TCQ9 1506 aa11.19□□□□□ -0.62
CCDC88A-213ENST00000476903 UBTFP17480 764 aaKnown RBP11.18□□□□□ -0.62
CCDC88A-213ENST00000476903 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.18□□□□□ -0.62
CCDC88A-213ENST00000476903 NUP153P49790 1475 aaKnown RBP11.18□□□□□ -0.62
CCDC88A-213ENST00000476903 SLC10A3P09131 477 aa11.17□□□□□ -0.62
CCDC88A-213ENST00000476903 ABCA9Q8IUA7 1624 aa11.17□□□□□ -0.62
CCDC88A-213ENST00000476903 RCCD1A6NED2 376 aa11.16□□□□□ -0.62
CCDC88A-213ENST00000476903 PAXIP1Q6ZW49 1069 aaPredicted RBP11.16□□□□□ -0.62
CCDC88A-213ENST00000476903 COL17A1Q9UMD9 1497 aaPredicted RBP11.15□□□□□ -0.62
CCDC88A-213ENST00000476903 TNFRSF10AO00220 468 aa11.15□□□□□ -0.62
CCDC88A-213ENST00000476903 ADH1BP00325 375 aa11.15□□□□□ -0.62
CCDC88A-213ENST00000476903 CFHP08603 1231 aa11.14□□□□□ -0.63
CCDC88A-213ENST00000476903 FAM161AQ3B820 660 aa11.14□□□□□ -0.63
CCDC88A-213ENST00000476903 RBM46Q8TBY0 533 aaKnown RBP11.14□□□□□ -0.63
CCDC88A-213ENST00000476903 CFAP44Q96MT7 982 aa11.14□□□□□ -0.63
CCDC88A-213ENST00000476903 FAM187AA6NFU0 413 aa11.13□□□□□ -0.63
CCDC88A-213ENST00000476903 KMT5BQ4FZB7 885 aa11.13□□□□□ -0.63
CCDC88A-213ENST00000476903 AAASQ9NRG9 546 aa11.13□□□□□ -0.63
CCDC88A-213ENST00000476903 FMN1Q68DA7 1419 aa11.12□□□□□ -0.63
CCDC88A-213ENST00000476903 ST8SIA5O15466 376 aa11.12□□□□□ -0.63
CCDC88A-213ENST00000476903 PKD2L1Q9P0L9 805 aa11.12□□□□□ -0.63
CCDC88A-213ENST00000476903 ARHGAP35Q9NRY4 1499 aa11.12□□□□□ -0.63
CCDC88A-213ENST00000476903 HECW1Q76N89 1606 aa11.11□□□□□ -0.63
CCDC88A-213ENST00000476903 ARHGEF1Q92888 912 aaKnown RBP11.11□□□□□ -0.63
CCDC88A-213ENST00000476903 PLEKHD1A6NEE1 506 aa11.1□□□□□ -0.63
CCDC88A-213ENST00000476903 TREML4Q6UXN2 200 aa11.1□□□□□ -0.63
CCDC88A-213ENST00000476903 SLC6A16Q9GZN6 736 aa11.1□□□□□ -0.63
CCDC88A-213ENST00000476903 ARAP3Q8WWN8 1544 aa11.09□□□□□ -0.63
CCDC88A-213ENST00000476903 PHLDB1Q86UU1 1377 aa11.09□□□□□ -0.63
CCDC88A-213ENST00000476903 SCUBE3Q8IX30 993 aa11.09□□□□□ -0.63
CCDC88A-213ENST00000476903 CDK13Q14004 1512 aaKnown RBP11.09□□□□□ -0.63
CCDC88A-213ENST00000476903 NR1I2O75469 434 aa11.08□□□□□ -0.64
CCDC88A-213ENST00000476903 NEO1Q92859 1461 aa11.07□□□□□ -0.64
CCDC88A-213ENST00000476903 CFAP74Q9C0B2 1584 aa11.07□□□□□ -0.64
CCDC88A-213ENST00000476903 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms