RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 RCAN3Q9UKA8 241 aa15.49■□□□□ 0.07
SYNE2-207ENST00000458046 CHGAP10645 457 aaKnown RBP15.49■□□□□ 0.07
SYNE2-207ENST00000458046 TESK2Q96S53 571 aa15.49■□□□□ 0.07
SYNE2-207ENST00000458046 PARD3Q8TEW0 1356 aa15.48■□□□□ 0.07
SYNE2-207ENST00000458046 MKRN3Q13064 507 aaKnown RBP15.48■□□□□ 0.07
SYNE2-207ENST00000458046 A2MP01023 1474 aa15.48■□□□□ 0.07
SYNE2-207ENST00000458046 PREX2Q70Z35 1606 aa15.47■□□□□ 0.07
SYNE2-207ENST00000458046 PAK3O75914 559 aaPredicted RBP15.47■□□□□ 0.07
SYNE2-207ENST00000458046 ATXN8OSP0DMR3 200 aa15.47■□□□□ 0.07
SYNE2-207ENST00000458046 WDR7Q9Y4E6 1490 aa15.46■□□□□ 0.07
SYNE2-207ENST00000458046 NOP58Q9Y2X3 529 aaKnown RBP15.46■□□□□ 0.07
SYNE2-207ENST00000458046 TRPM1Q7Z4N2 1603 aa15.46■□□□□ 0.06
SYNE2-207ENST00000458046 CD109Q6YHK3 1445 aa15.45■□□□□ 0.06
SYNE2-207ENST00000458046 ZCCHC11Q5TAX3 1644 aaKnown RBP15.45■□□□□ 0.06
SYNE2-207ENST00000458046 TMF1P82094 1093 aa15.44■□□□□ 0.06
SYNE2-207ENST00000458046 GPRASP1Q5JY77 1395 aa15.44■□□□□ 0.06
SYNE2-207ENST00000458046 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.44■□□□□ 0.06
SYNE2-207ENST00000458046 E9PCH4 1651 aa15.43■□□□□ 0.06
SYNE2-207ENST00000458046 HSPA1LP34931 641 aa15.43■□□□□ 0.06
SYNE2-207ENST00000458046 TEX2Q8IWB9 1127 aa15.43■□□□□ 0.06
SYNE2-207ENST00000458046 PLIN1O60240 522 aa15.42■□□□□ 0.06
SYNE2-207ENST00000458046 ERBINQ96RT1 1412 aa15.42■□□□□ 0.06
SYNE2-207ENST00000458046 PDE3BQ13370 1112 aa15.42■□□□□ 0.06
SYNE2-207ENST00000458046 NCLP19338 710 aaKnown RBP15.41■□□□□ 0.06
SYNE2-207ENST00000458046 ANP32AP39687 249 aaKnown RBP15.41■□□□□ 0.06
SYNE2-207ENST00000458046 CNPY4Q8N129 248 aa15.4■□□□□ 0.06
SYNE2-207ENST00000458046 CCDC125Q86Z20 511 aa15.4■□□□□ 0.06
SYNE2-207ENST00000458046 WASHC2CQ9Y4E1 1318 aa15.39■□□□□ 0.05
SYNE2-207ENST00000458046 UNC13BO14795 1591 aa15.39■□□□□ 0.05
SYNE2-207ENST00000458046 EFCAB2Q5VUJ9 269 aa15.39■□□□□ 0.05
SYNE2-207ENST00000458046 ZC3H15Q8WU90 426 aaKnown RBP15.39■□□□□ 0.05
SYNE2-207ENST00000458046 CPS1P31327 1500 aa15.39■□□□□ 0.05
SYNE2-207ENST00000458046 IPO9Q96P70 1041 aaKnown RBP15.39■□□□□ 0.05
SYNE2-207ENST00000458046 NEO1Q92859 1461 aa15.38■□□□□ 0.05
SYNE2-207ENST00000458046 RBM10P98175 930 aaKnown RBP15.38■□□□□ 0.05
SYNE2-207ENST00000458046 MAST1Q9Y2H9 1570 aa15.38■□□□□ 0.05
SYNE2-207ENST00000458046 ADAMTS8Q9UP79 889 aa15.37■□□□□ 0.05
SYNE2-207ENST00000458046 PRDM15P57071 1507 aaPredicted RBP15.37■□□□□ 0.05
SYNE2-207ENST00000458046 AFAP1Q8N556 730 aa15.36■□□□□ 0.05
SYNE2-207ENST00000458046 GPBP1L1Q9HC44 474 aaPredicted RBP15.36■□□□□ 0.05
SYNE2-207ENST00000458046 DUOX2Q9NRD8 1548 aa15.36■□□□□ 0.05
SYNE2-207ENST00000458046 ZBTB47Q9UFB7 747 aaPredicted RBP15.36■□□□□ 0.05
SYNE2-207ENST00000458046 TOM1O60784 492 aa15.35■□□□□ 0.05
SYNE2-207ENST00000458046 KNSTRNQ9Y448 316 aa15.35■□□□□ 0.05
SYNE2-207ENST00000458046 IQGAP3Q86VI3 1631 aa15.35■□□□□ 0.05
SYNE2-207ENST00000458046 TRAPPC8Q9Y2L5 1435 aa15.34■□□□□ 0.05
SYNE2-207ENST00000458046 SLC4A2P04920 1241 aa15.34■□□□□ 0.05
SYNE2-207ENST00000458046 PLCH2O75038 1416 aa15.34■□□□□ 0.05
SYNE2-207ENST00000458046 SKAP1Q86WV1 359 aa15.33■□□□□ 0.05
SYNE2-207ENST00000458046 IL27Q8NEV9 243 aa15.33■□□□□ 0.05
SYNE2-207ENST00000458046 CRBNQ96SW2 442 aa15.33■□□□□ 0.05
SYNE2-207ENST00000458046 FRMPD1Q5SYB0 1578 aa15.33■□□□□ 0.04
SYNE2-207ENST00000458046 RGS17Q9UGC6 210 aaPredicted RBP15.33■□□□□ 0.04
SYNE2-207ENST00000458046 SPAG9O60271 1321 aaKnown RBP15.33■□□□□ 0.04
SYNE2-207ENST00000458046 PLXNC1O60486 1568 aa15.33■□□□□ 0.04
SYNE2-207ENST00000458046 TCERG1O14776 1098 aaKnown RBP15.32■□□□□ 0.04
SYNE2-207ENST00000458046 ATP10AO60312 1499 aa15.32■□□□□ 0.04
SYNE2-207ENST00000458046 MYO5CQ9NQX4 1742 aa15.32■□□□□ 0.04
SYNE2-207ENST00000458046 PDE4AP27815 886 aa15.32■□□□□ 0.04
SYNE2-207ENST00000458046 PPP2R1AP30153 589 aa15.32■□□□□ 0.04
SYNE2-207ENST00000458046 IRF5Q13568 498 aa15.32■□□□□ 0.04
SYNE2-207ENST00000458046 DEKP35659 375 aaKnown RBP15.31■□□□□ 0.04
SYNE2-207ENST00000458046 BLMP54132 1417 aaPredicted RBP15.31■□□□□ 0.04
SYNE2-207ENST00000458046 MAGI2Q86UL8 1455 aa15.31■□□□□ 0.04
SYNE2-207ENST00000458046 WDR43Q15061 677 aaKnown RBP eCLIP15.3■□□□□ 0.04
SYNE2-207ENST00000458046 C20orf194Q5TEA3 1177 aa15.3■□□□□ 0.04
SYNE2-207ENST00000458046 MYT1LQ9UL68 1186 aa15.3■□□□□ 0.04
SYNE2-207ENST00000458046 ZMYM4Q5VZL5 1548 aa15.3■□□□□ 0.04
SYNE2-207ENST00000458046 UPF1Q92900 1129 aaKnown RBP eCLIP15.3■□□□□ 0.04
SYNE2-207ENST00000458046 EIF2AK4Q9P2K8 1649 aaKnown RBP15.3■□□□□ 0.04
SYNE2-207ENST00000458046 LAMC1P11047 1609 aa15.3■□□□□ 0.04
SYNE2-207ENST00000458046 PLCD4Q9BRC7 762 aa15.28■□□□□ 0.04
SYNE2-207ENST00000458046 SETD1AO15047 1707 aaKnown RBP15.28■□□□□ 0.04
SYNE2-207ENST00000458046 BACH2Q9BYV9 841 aa15.27■□□□□ 0.04
SYNE2-207ENST00000458046 LRP5O75197 1615 aa15.27■□□□□ 0.03
SYNE2-207ENST00000458046 PLEKHH1Q9ULM0 1364 aa15.26■□□□□ 0.03
SYNE2-207ENST00000458046 INSRP06213 1382 aa15.25■□□□□ 0.03
SYNE2-207ENST00000458046 CDCA8Q53HL2 280 aa15.25■□□□□ 0.03
SYNE2-207ENST00000458046 CCDC146Q8IYE0 955 aa15.25■□□□□ 0.03
SYNE2-207ENST00000458046 PCDH10Q9P2E7 1040 aa15.25■□□□□ 0.03
SYNE2-207ENST00000458046 KIF3BO15066 747 aa15.25■□□□□ 0.03
SYNE2-207ENST00000458046 DUSP27Q5VZP5 1158 aa15.24■□□□□ 0.03
SYNE2-207ENST00000458046 CDK12Q9NYV4 1490 aaPredicted RBP15.24■□□□□ 0.03
SYNE2-207ENST00000458046 ABCC1P33527 1531 aa15.24■□□□□ 0.03
SYNE2-207ENST00000458046 MS4A1P11836 297 aa15.24■□□□□ 0.03
SYNE2-207ENST00000458046 GOLGA2Q08379 1002 aa15.23■□□□□ 0.03
SYNE2-207ENST00000458046 CFAP70Q5T0N1 1121 aa15.23■□□□□ 0.03
SYNE2-207ENST00000458046 RETREG2Q8NC44 543 aa15.22■□□□□ 0.03
SYNE2-207ENST00000458046 SCAF11Q99590 1463 aaKnown RBP15.22■□□□□ 0.03
SYNE2-207ENST00000458046 FAM43BQ6ZT52 329 aaPredicted RBP15.22■□□□□ 0.03
SYNE2-207ENST00000458046 SMARCA5O60264 1052 aaPredicted RBP15.21■□□□□ 0.03
SYNE2-207ENST00000458046 RNF17Q9BXT8 1623 aaKnown RBP15.21■□□□□ 0.03
SYNE2-207ENST00000458046 RTL5Q5HYW3 569 aaPredicted RBP15.2■□□□□ 0.02
SYNE2-207ENST00000458046 ABCA9Q8IUA7 1624 aa15.2■□□□□ 0.02
SYNE2-207ENST00000458046 LAS1LQ9Y4W2 734 aaKnown RBP15.2■□□□□ 0.02
SYNE2-207ENST00000458046 APAF1O14727 1248 aa15.19■□□□□ 0.02
SYNE2-207ENST00000458046 CLUAP1Q96AJ1 413 aa15.19■□□□□ 0.02
SYNE2-207ENST00000458046 STAC3Q96MF2 364 aa15.19■□□□□ 0.02
SYNE2-207ENST00000458046 TRPM2O94759 1503 aa15.19■□□□□ 0.02
SYNE2-207ENST00000458046 KANK1Q14678 1352 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms