RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 SETD1BQ9UPS6 1966 aaKnown RBP19.41■□□□□ 0.7
USP39-207ENST00000450066 FAM135BQ49AJ0 1406 aa19.4■□□□□ 0.7
USP39-207ENST00000450066 NPC1L1Q9UHC9 1359 aa19.4■□□□□ 0.7
USP39-207ENST00000450066 MINK1Q8N4C8 1332 aaPredicted RBP19.39■□□□□ 0.7
USP39-207ENST00000450066 AMER1Q5JTC6 1135 aaPredicted RBP19.39■□□□□ 0.69
USP39-207ENST00000450066 CC2D1BQ5T0F9 858 aaKnown RBP19.39■□□□□ 0.69
USP39-207ENST00000450066 CPS1P31327 1500 aa19.38■□□□□ 0.69
USP39-207ENST00000450066 WAPLQ7Z5K2 1190 aa19.38■□□□□ 0.69
USP39-207ENST00000450066 TMC1Q8TDI8 760 aa19.37■□□□□ 0.69
USP39-207ENST00000450066 TBX22Q9Y458 520 aa19.37■□□□□ 0.69
USP39-207ENST00000450066 BRD4O60885 1362 aaPredicted RBP19.37■□□□□ 0.69
USP39-207ENST00000450066 SLC12A5Q9H2X9 1139 aa19.37■□□□□ 0.69
USP39-207ENST00000450066 CABP2Q9NPB3 220 aa19.37■□□□□ 0.69
USP39-207ENST00000450066 PLEKHH1Q9ULM0 1364 aa19.37■□□□□ 0.69
USP39-207ENST00000450066 NINLQ9Y2I6 1382 aa19.37■□□□□ 0.69
USP39-207ENST00000450066 DIP2AQ14689 1571 aa19.36■□□□□ 0.69
USP39-207ENST00000450066 SRPK2P78362 688 aaKnown RBP19.36■□□□□ 0.69
USP39-207ENST00000450066 CARD14Q9BXL6 1004 aa19.36■□□□□ 0.69
USP39-207ENST00000450066 NLRP13Q86W25 1043 aa19.36■□□□□ 0.69
USP39-207ENST00000450066 ATAD2Q6PL18 1390 aa19.36■□□□□ 0.69
USP39-207ENST00000450066 SLC26A8Q96RN1 970 aa19.35■□□□□ 0.69
USP39-207ENST00000450066 CDK19Q9BWU1 502 aa19.34■□□□□ 0.69
USP39-207ENST00000450066 ANKLE2Q86XL3 938 aa19.32■□□□□ 0.68
USP39-207ENST00000450066 FAM9BQ8IZU0 186 aa19.32■□□□□ 0.68
USP39-207ENST00000450066 ANKRD36BQ8N2N9 1353 aa19.32■□□□□ 0.68
USP39-207ENST00000450066 ROBO2Q9HCK4 1378 aa19.32■□□□□ 0.68
USP39-207ENST00000450066 PTPRUQ92729 1446 aa19.31■□□□□ 0.68
USP39-207ENST00000450066 PNISRQ8TF01 805 aaKnown RBP19.3■□□□□ 0.68
USP39-207ENST00000450066 NSD3Q9BZ95 1437 aa19.3■□□□□ 0.68
USP39-207ENST00000450066 USP32Q8NFA0 1604 aa19.28■□□□□ 0.68
USP39-207ENST00000450066 WASLO00401 505 aaPredicted RBP19.28■□□□□ 0.68
USP39-207ENST00000450066 PIK3R4Q99570 1358 aa19.28■□□□□ 0.68
USP39-207ENST00000450066 AMOTL2Q9Y2J4 779 aa19.28■□□□□ 0.68
USP39-207ENST00000450066 PTCH1Q13635 1447 aa19.27■□□□□ 0.68
USP39-207ENST00000450066 HNRNPUQ00839 825 aaKnown RBP eCLIP19.27■□□□□ 0.68
USP39-207ENST00000450066 TERF2IPQ9NYB0 399 aa19.26■□□□□ 0.67
USP39-207ENST00000450066 CGNL1Q0VF96 1302 aa19.25■□□□□ 0.67
USP39-207ENST00000450066 PPP2R1AP30153 589 aa19.25■□□□□ 0.67
USP39-207ENST00000450066 A0A1W2PP64 1363 aa19.25■□□□□ 0.67
USP39-207ENST00000450066 ADGRB2O60241 1585 aa19.25■□□□□ 0.67
USP39-207ENST00000450066 CD163L1Q9NR16 1453 aa19.24■□□□□ 0.67
USP39-207ENST00000450066 XRN1Q8IZH2 1706 aaKnown RBP19.23■□□□□ 0.67
USP39-207ENST00000450066 CABP1Q9NZU7 370 aa19.23■□□□□ 0.67
USP39-207ENST00000450066 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.22■□□□□ 0.67
USP39-207ENST00000450066 NSD2O96028 1365 aa19.22■□□□□ 0.67
USP39-207ENST00000450066 HDGFL2Q7Z4V5 671 aaPredicted RBP19.21■□□□□ 0.67
USP39-207ENST00000450066 ATP7BP35670 1465 aa19.21■□□□□ 0.67
USP39-207ENST00000450066 NUDT16Q96DE0 195 aaKnown RBP19.2■□□□□ 0.66
USP39-207ENST00000450066 NPHP4O75161 1426 aaPredicted RBP19.19■□□□□ 0.66
USP39-207ENST00000450066 CCDC61Q9Y6R9 512 aa19.18■□□□□ 0.66
USP39-207ENST00000450066 KCNA6P17658 529 aa19.18■□□□□ 0.66
USP39-207ENST00000450066 MORC1Q86VD1 984 aa19.18■□□□□ 0.66
USP39-207ENST00000450066 PPIP5K1Q6PFW1 1433 aa19.18■□□□□ 0.66
USP39-207ENST00000450066 ZBED9Q6R2W3 1325 aa19.16■□□□□ 0.66
USP39-207ENST00000450066 CHD2O14647 1828 aaKnown RBP19.16■□□□□ 0.66
USP39-207ENST00000450066 INSRP06213 1382 aa19.16■□□□□ 0.66
USP39-207ENST00000450066 CPSF1Q10570 1443 aaKnown RBP19.15■□□□□ 0.66
USP39-207ENST00000450066 PRR36Q9H6K5 1346 aa19.14■□□□□ 0.65
USP39-207ENST00000450066 NCKAP5LQ9HCH0 1330 aa19.13■□□□□ 0.65
USP39-207ENST00000450066 CDC42BPGQ6DT37 1551 aa19.13■□□□□ 0.65
USP39-207ENST00000450066 KDM4FA0A1W2PPD8 638 aa19.12■□□□□ 0.65
USP39-207ENST00000450066 FYB1O15117 783 aa19.12■□□□□ 0.65
USP39-207ENST00000450066 SCAF1Q9H7N4 1312 aaKnown RBP19.11■□□□□ 0.65
USP39-207ENST00000450066 TOPAZ1Q8N9V7 1692 aa19.11■□□□□ 0.65
USP39-207ENST00000450066 EDC4Q6P2E9 1401 aaKnown RBP19.1■□□□□ 0.65
USP39-207ENST00000450066 POLR3AO14802 1390 aaPredicted RBP19.1■□□□□ 0.65
USP39-207ENST00000450066 ZNF692Q9BU19 519 aaPredicted RBP19.1■□□□□ 0.65
USP39-207ENST00000450066 GTF3C3Q9Y5Q9 886 aa19.1■□□□□ 0.65
USP39-207ENST00000450066 ANKRD26Q9UPS8 1709 aa19.09■□□□□ 0.65
USP39-207ENST00000450066 PLEKHG3A1L390 1219 aa19.09■□□□□ 0.65
USP39-207ENST00000450066 TNNT2P45379 298 aaPredicted RBP19.09■□□□□ 0.65
USP39-207ENST00000450066 GGNBP2Q9H3C7 697 aa19.09■□□□□ 0.65
USP39-207ENST00000450066 BLMP54132 1417 aaPredicted RBP19.08■□□□□ 0.65
USP39-207ENST00000450066 WDR43Q15061 677 aaKnown RBP eCLIP19.08■□□□□ 0.64
USP39-207ENST00000450066 KIF20BQ96Q89 1820 aa19.08■□□□□ 0.64
USP39-207ENST00000450066 AKAP12Q02952 1782 aa19.07■□□□□ 0.64
USP39-207ENST00000450066 ITSN1Q15811 1721 aa19.07■□□□□ 0.64
USP39-207ENST00000450066 MON2Q7Z3U7 1717 aa19.07■□□□□ 0.64
USP39-207ENST00000450066 ADAMTS8Q9UP79 889 aa19.07■□□□□ 0.64
USP39-207ENST00000450066 NWD1Q149M9 1564 aa19.06■□□□□ 0.64
USP39-207ENST00000450066 ANKARQ7Z5J8 1434 aa19.06■□□□□ 0.64
USP39-207ENST00000450066 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.05■□□□□ 0.64
USP39-207ENST00000450066 NUTM2FA1L443 756 aa19.05■□□□□ 0.64
USP39-207ENST00000450066 MTHFSP49914 203 aa19.04■□□□□ 0.64
USP39-207ENST00000450066 ACEP12821 1306 aa19.04■□□□□ 0.64
USP39-207ENST00000450066 NKTRP30414 1462 aaKnown RBP19.03■□□□□ 0.64
USP39-207ENST00000450066 FMN2Q9NZ56 1722 aa19.03■□□□□ 0.64
USP39-207ENST00000450066 NALCNQ8IZF0 1738 aa19.03■□□□□ 0.64
USP39-207ENST00000450066 CFAP53Q96M91 514 aa19.02■□□□□ 0.63
USP39-207ENST00000450066 ADGRL3Q9HAR2 1447 aa19.02■□□□□ 0.63
USP39-207ENST00000450066 LMTK3Q96Q04 1460 aa19■□□□□ 0.63
USP39-207ENST00000450066 USP6P35125 1406 aa19■□□□□ 0.63
USP39-207ENST00000450066 NRKQ7Z2Y5 1582 aa19■□□□□ 0.63
USP39-207ENST00000450066 HSPA2P54652 639 aa18.99■□□□□ 0.63
USP39-207ENST00000450066 NME9Q86XW9 330 aa18.99■□□□□ 0.63
USP39-207ENST00000450066 SHPRHQ149N8 1683 aa18.98■□□□□ 0.63
USP39-207ENST00000450066 TTC21BQ7Z4L5 1316 aa18.98■□□□□ 0.63
USP39-207ENST00000450066 RGPD8O14715 1765 aaPredicted RBP18.98■□□□□ 0.63
USP39-207ENST00000450066 SSH2Q76I76 1423 aa18.97■□□□□ 0.63
USP39-207ENST00000450066 RBM33Q96EV2 1170 aaKnown RBP18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms