RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 OVOL3O00110 214 aa1.98□□□□□ -2.09
RNU4-88P-201ENST00000411220 TTC13Q8NBP0 860 aa1.98□□□□□ -2.09
RNU4-88P-201ENST00000411220 COL8A1P27658 744 aa1.97□□□□□ -2.09
RNU4-88P-201ENST00000411220 KRTAP10-7P60409 375 aaPredicted RBP1.97□□□□□ -2.09
RNU4-88P-201ENST00000411220 ZDHHC16Q969W1 377 aa1.97□□□□□ -2.09
RNU4-88P-201ENST00000411220 OGFOD2Q6N063 350 aa1.96□□□□□ -2.1
RNU4-88P-201ENST00000411220 KRTAP5-2Q701N4 177 aa1.96□□□□□ -2.1
RNU4-88P-201ENST00000411220 PLCD3Q8N3E9 789 aa1.96□□□□□ -2.1
RNU4-88P-201ENST00000411220 TMC2Q8TDI7 906 aa1.96□□□□□ -2.1
RNU4-88P-201ENST00000411220 CAPN5O15484 640 aaPredicted RBP1.95□□□□□ -2.1
RNU4-88P-201ENST00000411220 KCNA4P22459 653 aa1.95□□□□□ -2.1
RNU4-88P-201ENST00000411220 CHRNA4P43681 627 aa1.95□□□□□ -2.1
RNU4-88P-201ENST00000411220 WNT7AO00755 349 aa1.94□□□□□ -2.1
RNU4-88P-201ENST00000411220 TLL1O43897 1013 aa1.94□□□□□ -2.1
RNU4-88P-201ENST00000411220 DBX2Q6ZNG2 339 aa1.94□□□□□ -2.1
RNU4-88P-201ENST00000411220 SAMD7Q7Z3H4 446 aa1.94□□□□□ -2.1
RNU4-88P-201ENST00000411220 OBSCNQ5VST9 7968 aa1.93□□□□□ -2.1
RNU4-88P-201ENST00000411220 GATA4P43694 442 aa1.93□□□□□ -2.1
RNU4-88P-201ENST00000411220 NANOS1Q8WY41 292 aaKnown RBP1.93□□□□□ -2.1
RNU4-88P-201ENST00000411220 JPH4Q96JJ6 628 aa1.93□□□□□ -2.1
RNU4-88P-201ENST00000411220 SOX12O15370 315 aa1.92□□□□□ -2.1
RNU4-88P-201ENST00000411220 CHRM1P11229 460 aaPredicted RBP1.92□□□□□ -2.1
RNU4-88P-201ENST00000411220 SRSF11Q05519 484 aaKnown RBP1.92□□□□□ -2.1
RNU4-88P-201ENST00000411220 POU5F2Q8N7G0 328 aa1.92□□□□□ -2.1
RNU4-88P-201ENST00000411220 MAN1A2O60476 641 aa1.91□□□□□ -2.1
RNU4-88P-201ENST00000411220 GRIN2CQ14957 1233 aa1.91□□□□□ -2.1
RNU4-88P-201ENST00000411220 SCARF1Q14162 830 aa1.9□□□□□ -2.11
RNU4-88P-201ENST00000411220 TMPRSS5Q9H3S3 457 aa1.9□□□□□ -2.11
RNU4-88P-201ENST00000411220 MKL2Q9ULH7 1088 aa1.9□□□□□ -2.11
RNU4-88P-201ENST00000411220 DBX1A6NMT0 343 aa1.89□□□□□ -2.11
RNU4-88P-201ENST00000411220 NECTIN2Q92692 538 aa1.89□□□□□ -2.11
RNU4-88P-201ENST00000411220 TRIM6-TRIM34B2RNG4 842 aa1.88□□□□□ -2.11
RNU4-88P-201ENST00000411220 MRGPRX2Q96LB1 330 aa1.88□□□□□ -2.11
RNU4-88P-201ENST00000411220 RNF40O75150 1001 aa1.87□□□□□ -2.11
RNU4-88P-201ENST00000411220 BCRP11274 1271 aa1.87□□□□□ -2.11
RNU4-88P-201ENST00000411220 SNRPNP63162 240 aaKnown RBP1.87□□□□□ -2.11
RNU4-88P-201ENST00000411220 SLC6A16Q9GZN6 736 aa1.87□□□□□ -2.11
RNU4-88P-201ENST00000411220 PCDHB3Q9Y5E6 796 aa1.87□□□□□ -2.11
RNU4-88P-201ENST00000411220 MRPL14Q6P1L8 145 aaKnown RBP1.86□□□□□ -2.11
RNU4-88P-201ENST00000411220 ZDHHC13Q8IUH4 622 aa1.86□□□□□ -2.11
RNU4-88P-201ENST00000411220 PURBQ96QR8 312 aaKnown RBP1.86□□□□□ -2.11
RNU4-88P-201ENST00000411220 TPSG1Q9NRR2 321 aa1.86□□□□□ -2.11
RNU4-88P-201ENST00000411220 PCMTD2Q9NV79 361 aa1.86□□□□□ -2.11
RNU4-88P-201ENST00000411220 PHF8Q9UPP1 1060 aa1.86□□□□□ -2.11
RNU4-88P-201ENST00000411220 ADH1BP00325 375 aa1.85□□□□□ -2.11
RNU4-88P-201ENST00000411220 KRTAP19-4Q3LI73 84 aa1.85□□□□□ -2.11
RNU4-88P-201ENST00000411220 BLOC1S3Q6QNY0 202 aa1.85□□□□□ -2.11
RNU4-88P-201ENST00000411220 SH3RF1Q7Z6J0 888 aa1.85□□□□□ -2.11
RNU4-88P-201ENST00000411220 NAF1Q96HR8 494 aaKnown RBP1.85□□□□□ -2.11
RNU4-88P-201ENST00000411220 OAS3Q9Y6K5 1087 aaKnown RBP1.85□□□□□ -2.11
RNU4-88P-201ENST00000411220 KRTAP10-9P60411 292 aa1.84□□□□□ -2.11
RNU4-88P-201ENST00000411220 REPIN1Q9BWE0 567 aaKnown RBP1.84□□□□□ -2.11
RNU4-88P-201ENST00000411220 RIC3Q7Z5B4 369 aa1.83□□□□□ -2.12
RNU4-88P-201ENST00000411220 ACSS3Q9H6R3 686 aa1.83□□□□□ -2.12
RNU4-88P-201ENST00000411220 SV2AQ7L0J3 742 aa1.81□□□□□ -2.12
RNU4-88P-201ENST00000411220 VWA5B2Q8N398 1253 aa1.81□□□□□ -2.12
RNU4-88P-201ENST00000411220 SUV39H2Q9H5I1 410 aa1.81□□□□□ -2.12
RNU4-88P-201ENST00000411220 LRRC4BQ9NT99 713 aa1.81□□□□□ -2.12
RNU4-88P-201ENST00000411220 ONECUT2O95948 504 aa1.8□□□□□ -2.12
RNU4-88P-201ENST00000411220 ALDH1A1P00352 501 aa1.8□□□□□ -2.12
RNU4-88P-201ENST00000411220 GSE1Q14687 1217 aa1.8□□□□□ -2.12
RNU4-88P-201ENST00000411220 PLPP6Q8IY26 295 aa1.8□□□□□ -2.12
RNU4-88P-201ENST00000411220 PRR14Q9BWN1 585 aa1.8□□□□□ -2.12
RNU4-88P-201ENST00000411220 RNF112Q9ULX5 631 aa1.8□□□□□ -2.12
RNU4-88P-201ENST00000411220 CDC14CA4D256 554 aa1.79□□□□□ -2.12
RNU4-88P-201ENST00000411220 PACS2Q86VP3 889 aa1.79□□□□□ -2.12
RNU4-88P-201ENST00000411220 PIK3R2O00459 728 aa1.78□□□□□ -2.12
RNU4-88P-201ENST00000411220 ZBTB24O43167 697 aaPredicted RBP1.78□□□□□ -2.12
RNU4-88P-201ENST00000411220 HDGFP51858 240 aaKnown RBP1.78□□□□□ -2.12
RNU4-88P-201ENST00000411220 GP2P55259 537 aaKnown RBP1.78□□□□□ -2.12
RNU4-88P-201ENST00000411220 NTN5Q8WTR8 489 aaPredicted RBP1.78□□□□□ -2.12
RNU4-88P-201ENST00000411220 FCF1Q9Y324 198 aaKnown RBP1.78□□□□□ -2.12
RNU4-88P-201ENST00000411220 KRTAP5-8O75690 187 aa1.77□□□□□ -2.13
RNU4-88P-201ENST00000411220 H2AFB1P0C5Y9 115 aa1.77□□□□□ -2.13
RNU4-88P-201ENST00000411220 H2AFB2P0C5Z0 115 aa1.77□□□□□ -2.13
RNU4-88P-201ENST00000411220 RAPGEFL1Q9UHV5 662 aa1.77□□□□□ -2.13
RNU4-88P-201ENST00000411220 FOXK1P85037 733 aa1.76□□□□□ -2.13
RNU4-88P-201ENST00000411220 PROM2Q8N271 834 aa1.76□□□□□ -2.13
RNU4-88P-201ENST00000411220 MICALL1Q8N3F8 863 aa1.76□□□□□ -2.13
RNU4-88P-201ENST00000411220 OXER1Q8TDS5 423 aa1.76□□□□□ -2.13
RNU4-88P-201ENST00000411220 KRTAP4-3Q9BYR4 195 aa1.76□□□□□ -2.13
RNU4-88P-201ENST00000411220 HMCN1Q96RW7 5635 aa1.75□□□□□ -2.13
RNU4-88P-201ENST00000411220 ZNF124Q15973 351 aa1.75□□□□□ -2.13
RNU4-88P-201ENST00000411220 RRAGCQ9HB90 399 aa1.75□□□□□ -2.13
RNU4-88P-201ENST00000411220 ZBTB22O15209 634 aa1.74□□□□□ -2.13
RNU4-88P-201ENST00000411220 OIP5O43482 229 aa1.74□□□□□ -2.13
RNU4-88P-201ENST00000411220 NLRP6P59044 892 aa1.74□□□□□ -2.13
RNU4-88P-201ENST00000411220 PTSQ03393 145 aa1.74□□□□□ -2.13
RNU4-88P-201ENST00000411220 HNRNPA0Q13151 305 aaKnown RBP1.74□□□□□ -2.13
RNU4-88P-201ENST00000411220 GAS6Q14393 721 aa1.74□□□□□ -2.13
RNU4-88P-201ENST00000411220 GGNQ86UU5 652 aa1.74□□□□□ -2.13
RNU4-88P-201ENST00000411220 CCDC155Q8N6L0 562 aa1.74□□□□□ -2.13
RNU4-88P-201ENST00000411220 TRIM52Q96A61 297 aa1.74□□□□□ -2.13
RNU4-88P-201ENST00000411220 ACDQ96AP0 544 aa1.74□□□□□ -2.13
RNU4-88P-201ENST00000411220 CRELD1Q96HD1 420 aa1.74□□□□□ -2.13
RNU4-88P-201ENST00000411220 NOP53Q9NZM5 478 aaKnown RBP1.74□□□□□ -2.13
RNU4-88P-201ENST00000411220 WASF2Q9Y6W5 498 aa1.74□□□□□ -2.13
RNU4-88P-201ENST00000411220 ITGA6P23229 1130 aa1.73□□□□□ -2.13
RNU4-88P-201ENST00000411220 UPF1Q92900 1129 aaKnown RBP eCLIP1.73□□□□□ -2.13
RNU4-88P-201ENST00000411220 DNMT3LQ9UJW3 386 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms