RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CFAP99D6REC4 459 aa11.3□□□□□ -0.6
USP40-202ENST00000409945 FNBP4Q8N3X1 1017 aaPredicted RBP11.3□□□□□ -0.6
USP40-202ENST00000409945 HMX1Q9NP08 348 aaPredicted RBP11.3□□□□□ -0.6
USP40-202ENST00000409945 SPDYE5A6NIY4 337 aa11.29□□□□□ -0.6
USP40-202ENST00000409945 GJA5P36382 358 aa11.29□□□□□ -0.6
USP40-202ENST00000409945 SLF2Q8IX21 1173 aa11.29□□□□□ -0.6
USP40-202ENST00000409945 NUTM2BA6NNL0 878 aaPredicted RBP11.29□□□□□ -0.6
USP40-202ENST00000409945 NUTM2EB1AL46 878 aaPredicted RBP11.29□□□□□ -0.6
USP40-202ENST00000409945 NUTM2DQ5VT03 806 aaPredicted RBP11.29□□□□□ -0.6
USP40-202ENST00000409945 NUTM2AQ8IVF1 878 aaPredicted RBP11.29□□□□□ -0.6
USP40-202ENST00000409945 ARID3AQ99856 593 aa11.29□□□□□ -0.6
USP40-202ENST00000409945 APBB1O00213 710 aa11.28□□□□□ -0.6
USP40-202ENST00000409945 A6NJR5 290 aa11.27□□□□□ -0.6
USP40-202ENST00000409945 TRAK2O60296 914 aa11.27□□□□□ -0.6
USP40-202ENST00000409945 CTDSPL2Q05D32 466 aa11.27□□□□□ -0.6
USP40-202ENST00000409945 GDPD2Q9HCC8 539 aa11.27□□□□□ -0.6
USP40-202ENST00000409945 USP17L8P0C7I0 530 aa11.27□□□□□ -0.61
USP40-202ENST00000409945 USP46P62068 366 aa11.27□□□□□ -0.61
USP40-202ENST00000409945 GPR37L1O60883 481 aa11.26□□□□□ -0.61
USP40-202ENST00000409945 HDGFP51858 240 aaKnown RBP11.26□□□□□ -0.61
USP40-202ENST00000409945 BANK1Q8NDB2 785 aa11.25□□□□□ -0.61
USP40-202ENST00000409945 LRCH3Q96II8 777 aa11.25□□□□□ -0.61
USP40-202ENST00000409945 ZBTB3Q9H5J0 574 aa11.25□□□□□ -0.61
USP40-202ENST00000409945 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.25□□□□□ -0.61
USP40-202ENST00000409945 APLP1P51693 650 aa11.25□□□□□ -0.61
USP40-202ENST00000409945 TMEM259Q4ZIN3 620 aa11.25□□□□□ -0.61
USP40-202ENST00000409945 PRPF38BQ5VTL8 546 aaKnown RBP11.25□□□□□ -0.61
USP40-202ENST00000409945 PROSER2Q86WR7 435 aaPredicted RBP11.25□□□□□ -0.61
USP40-202ENST00000409945 TBC1D2BQ9UPU7 963 aa11.25□□□□□ -0.61
USP40-202ENST00000409945 SLC27A5Q9Y2P5 690 aa11.25□□□□□ -0.61
USP40-202ENST00000409945 EPS8L1Q8TE68 723 aa11.24□□□□□ -0.61
USP40-202ENST00000409945 LRRN4Q8WUT4 740 aa11.24□□□□□ -0.61
USP40-202ENST00000409945 GJD4Q96KN9 370 aaPredicted RBP11.24□□□□□ -0.61
USP40-202ENST00000409945 ZNF777Q9ULD5 760 aaPredicted RBP11.24□□□□□ -0.61
USP40-202ENST00000409945 ATP6V1AP38606 617 aa11.23□□□□□ -0.61
USP40-202ENST00000409945 MTMR2Q13614 643 aa11.23□□□□□ -0.61
USP40-202ENST00000409945 MORN1Q5T089 497 aa11.23□□□□□ -0.61
USP40-202ENST00000409945 RSPH4AQ5TD94 716 aa11.23□□□□□ -0.61
USP40-202ENST00000409945 C6orf229H3BNL8 230 aa11.23□□□□□ -0.61
USP40-202ENST00000409945 RNF19BQ6ZMZ0 732 aa11.23□□□□□ -0.61
USP40-202ENST00000409945 PER1O15534 1290 aaPredicted RBP11.22□□□□□ -0.61
USP40-202ENST00000409945 BLOC1S3Q6QNY0 202 aa11.22□□□□□ -0.61
USP40-202ENST00000409945 TSC1Q92574 1164 aa11.22□□□□□ -0.61
USP40-202ENST00000409945 SOWAHBA6NEL2 793 aa11.21□□□□□ -0.61
USP40-202ENST00000409945 TRIM34Q9BYJ4 488 aa11.21□□□□□ -0.61
USP40-202ENST00000409945 HPS5Q9UPZ3 1129 aa11.21□□□□□ -0.61
USP40-202ENST00000409945 WIZO95785 1651 aa11.21□□□□□ -0.61
USP40-202ENST00000409945 ERCC6Q03468 1493 aa11.21□□□□□ -0.61
USP40-202ENST00000409945 RSF1Q96T23 1441 aaPredicted RBP11.2□□□□□ -0.62
USP40-202ENST00000409945 ACTN4O43707 911 aaKnown RBP11.2□□□□□ -0.62
USP40-202ENST00000409945 WBP1LQ9NX94 342 aa11.19□□□□□ -0.62
USP40-202ENST00000409945 CCDC82Q8N4S0 544 aa11.19□□□□□ -0.62
USP40-202ENST00000409945 WNT2BQ93097 391 aa11.18□□□□□ -0.62
USP40-202ENST00000409945 POM121CA8CG34 1229 aa11.17□□□□□ -0.62
USP40-202ENST00000409945 ANKK1Q8NFD2 765 aa11.17□□□□□ -0.62
USP40-202ENST00000409945 PRR7Q8TB68 274 aa11.17□□□□□ -0.62
USP40-202ENST00000409945 ARXQ96QS3 562 aa11.17□□□□□ -0.62
USP40-202ENST00000409945 POTEMA6NI47 508 aa11.17□□□□□ -0.62
USP40-202ENST00000409945 LAMC3Q9Y6N6 1575 aa11.16□□□□□ -0.62
USP40-202ENST00000409945 ABL2P42684 1182 aa11.16□□□□□ -0.62
USP40-202ENST00000409945 SLC4A3P48751 1232 aa11.16□□□□□ -0.62
USP40-202ENST00000409945 RAD21O60216 631 aa11.15□□□□□ -0.62
USP40-202ENST00000409945 PPP4CP60510 307 aa11.15□□□□□ -0.62
USP40-202ENST00000409945 IRF5Q13568 498 aa11.15□□□□□ -0.62
USP40-202ENST00000409945 KMT5BQ4FZB7 885 aa11.15□□□□□ -0.62
USP40-202ENST00000409945 TOP2AP11388 1531 aaKnown RBP11.14□□□□□ -0.63
USP40-202ENST00000409945 GOLGA8CPA6NN73 597 aa11.13□□□□□ -0.63
USP40-202ENST00000409945 SCUBE3Q8IX30 993 aa11.13□□□□□ -0.63
USP40-202ENST00000409945 THAP11Q96EK4 314 aa11.13□□□□□ -0.63
USP40-202ENST00000409945 TSR3Q9UJK0 312 aaKnown RBP11.13□□□□□ -0.63
USP40-202ENST00000409945 PDS5BQ9NTI5 1447 aa11.12□□□□□ -0.63
USP40-202ENST00000409945 GRIPAP1Q4V328 841 aa11.12□□□□□ -0.63
USP40-202ENST00000409945 NR6A1Q15406 480 aa11.11□□□□□ -0.63
USP40-202ENST00000409945 RETREG3Q86VR2 466 aa11.11□□□□□ -0.63
USP40-202ENST00000409945 ZNF330Q9Y3S2 320 aaPredicted RBP11.11□□□□□ -0.63
USP40-202ENST00000409945 NESP48681 1621 aa11.11□□□□□ -0.63
USP40-202ENST00000409945 CADPSQ9ULU8 1353 aa11.1□□□□□ -0.63
USP40-202ENST00000409945 THSD4Q6ZMP0 1018 aa11.1□□□□□ -0.63
USP40-202ENST00000409945 ADAMTS19Q8TE59 1207 aa11.1□□□□□ -0.63
USP40-202ENST00000409945 KCTD12Q96CX2 325 aaKnown RBP11.1□□□□□ -0.63
USP40-202ENST00000409945 BRICD5Q6PL45 260 aa11.09□□□□□ -0.63
USP40-202ENST00000409945 HELBQ8NG08 1087 aaPredicted RBP11.09□□□□□ -0.63
USP40-202ENST00000409945 PLSCR2Q9NRY7 297 aa11.09□□□□□ -0.63
USP40-202ENST00000409945 PCDHB3Q9Y5E6 796 aa11.09□□□□□ -0.63
USP40-202ENST00000409945 COPS2P61201 443 aa11.09□□□□□ -0.63
USP40-202ENST00000409945 STAC3Q96MF2 364 aa11.09□□□□□ -0.63
USP40-202ENST00000409945 PRDM9Q9NQV7 894 aa11.09□□□□□ -0.63
USP40-202ENST00000409945 CUX2O14529 1486 aa11.08□□□□□ -0.64
USP40-202ENST00000409945 TLL1O43897 1013 aa11.07□□□□□ -0.64
USP40-202ENST00000409945 HOMEZQ8IX15 550 aa11.07□□□□□ -0.64
USP40-202ENST00000409945 SOCS7O14512 581 aa11.07□□□□□ -0.64
USP40-202ENST00000409945 POTEGQ6S5H5 508 aa11.06□□□□□ -0.64
USP40-202ENST00000409945 USB1Q9BQ65 265 aaKnown RBP11.06□□□□□ -0.64
USP40-202ENST00000409945 NDUFB9Q9Y6M9 179 aa11.05□□□□□ -0.64
USP40-202ENST00000409945 CDAN1Q8IWY9 1227 aa11.05□□□□□ -0.64
USP40-202ENST00000409945 FAM160A2Q8N612 972 aaPredicted RBP11.05□□□□□ -0.64
USP40-202ENST00000409945 VAC14Q08AM6 782 aa11.04□□□□□ -0.64
USP40-202ENST00000409945 MAP10Q9P2G4 905 aa11.04□□□□□ -0.64
USP40-202ENST00000409945 Q3C1V9 767 aa11.02□□□□□ -0.65
USP40-202ENST00000409945 LYPD8Q6UX82 237 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms