RNA–Protein interactions for RNA: ENST00000406327.2

HMGB3P18-201, Transcript of high mobility group box 3 pseudogene 18, humanhuman

BASIC

Gene HMGB3P18, Length 590 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P18-201ENST00000406327 KCNC4Q03721 635 aa8.61□□□□□ -1.03
HMGB3P18-201ENST00000406327 CSPP1Q1MSJ5 1256 aa8.61□□□□□ -1.03
HMGB3P18-201ENST00000406327 ZBTB3Q9H5J0 574 aa8.61□□□□□ -1.03
HMGB3P18-201ENST00000406327 SOWAHBA6NEL2 793 aa8.6□□□□□ -1.03
HMGB3P18-201ENST00000406327 BCAMP50895 628 aa8.6□□□□□ -1.03
HMGB3P18-201ENST00000406327 PODXL2Q9NZ53 605 aa8.6□□□□□ -1.03
HMGB3P18-201ENST00000406327 AP1G2O75843 785 aa8.59□□□□□ -1.03
HMGB3P18-201ENST00000406327 GCGRP47871 477 aa8.59□□□□□ -1.03
HMGB3P18-201ENST00000406327 PROX2Q3B8N5 592 aa8.59□□□□□ -1.03
HMGB3P18-201ENST00000406327 GRIPAP1Q4V328 841 aa8.59□□□□□ -1.03
HMGB3P18-201ENST00000406327 LAPTM4BQ86VI4 370 aa8.59□□□□□ -1.03
HMGB3P18-201ENST00000406327 MTMR14Q8NCE2 650 aa8.59□□□□□ -1.03
HMGB3P18-201ENST00000406327 NDUFV2P19404 249 aa8.58□□□□□ -1.04
HMGB3P18-201ENST00000406327 TRAF7Q6Q0C0 670 aa8.58□□□□□ -1.04
HMGB3P18-201ENST00000406327 KIAA1468Q9P260 1216 aa8.58□□□□□ -1.04
HMGB3P18-201ENST00000406327 SMAPO00193 183 aa8.57□□□□□ -1.04
HMGB3P18-201ENST00000406327 HOXA2O43364 376 aa8.57□□□□□ -1.04
HMGB3P18-201ENST00000406327 USP17L8P0C7I0 530 aa8.57□□□□□ -1.04
HMGB3P18-201ENST00000406327 FDX1P10109 184 aa8.57□□□□□ -1.04
HMGB3P18-201ENST00000406327 QPCTQ16769 361 aa8.57□□□□□ -1.04
HMGB3P18-201ENST00000406327 GDPD2Q9HCC8 539 aa8.57□□□□□ -1.04
HMGB3P18-201ENST00000406327 C3orf80F5H4A9 247 aa8.56□□□□□ -1.04
HMGB3P18-201ENST00000406327 SLF2Q8IX21 1173 aa8.56□□□□□ -1.04
HMGB3P18-201ENST00000406327 HELBQ8NG08 1087 aaPredicted RBP8.56□□□□□ -1.04
HMGB3P18-201ENST00000406327 NECTIN2Q92692 538 aa8.56□□□□□ -1.04
HMGB3P18-201ENST00000406327 NDUFB9Q9Y6M9 179 aa8.56□□□□□ -1.04
HMGB3P18-201ENST00000406327 ZBTB7CA1YPR0 619 aa8.55□□□□□ -1.04
HMGB3P18-201ENST00000406327 GFRA3O60609 400 aa8.55□□□□□ -1.04
HMGB3P18-201ENST00000406327 ABL2P42684 1182 aa8.55□□□□□ -1.04
HMGB3P18-201ENST00000406327 ZFRQ96KR1 1074 aaKnown RBP8.55□□□□□ -1.04
HMGB3P18-201ENST00000406327 WBP1LQ9NX94 342 aa8.55□□□□□ -1.04
HMGB3P18-201ENST00000406327 PCDHB15Q9Y5E8 787 aa8.55□□□□□ -1.04
HMGB3P18-201ENST00000406327 LCE2BO14633 110 aa8.54□□□□□ -1.04
HMGB3P18-201ENST00000406327 HRCP23327 699 aa8.54□□□□□ -1.04
HMGB3P18-201ENST00000406327 FAM98CQ17RN3 349 aaKnown RBP8.54□□□□□ -1.04
HMGB3P18-201ENST00000406327 FBXO31Q5XUX0 539 aaPredicted RBP8.54□□□□□ -1.04
HMGB3P18-201ENST00000406327 MTMR2Q13614 643 aa8.53□□□□□ -1.04
HMGB3P18-201ENST00000406327 WASHC4Q2M389 1173 aa8.53□□□□□ -1.04
HMGB3P18-201ENST00000406327 RTL5Q5HYW3 569 aaPredicted RBP8.53□□□□□ -1.04
HMGB3P18-201ENST00000406327 SWT1Q5T5J6 900 aaKnown RBP8.53□□□□□ -1.04
HMGB3P18-201ENST00000406327 CABLES1Q8TDN4 633 aa8.52□□□□□ -1.05
HMGB3P18-201ENST00000406327 CALR3Q96L12 384 aaKnown RBP8.52□□□□□ -1.05
HMGB3P18-201ENST00000406327 PPP1R15AO75807 674 aaPredicted RBP8.51□□□□□ -1.05
HMGB3P18-201ENST00000406327 PDE4CQ08493 712 aa8.51□□□□□ -1.05
HMGB3P18-201ENST00000406327 TRIM26Q12899 539 aaPredicted RBP8.51□□□□□ -1.05
HMGB3P18-201ENST00000406327 TBC1D2BQ9UPU7 963 aa8.51□□□□□ -1.05
HMGB3P18-201ENST00000406327 SLC10A3P09131 477 aa8.49□□□□□ -1.05
HMGB3P18-201ENST00000406327 KMT5BQ4FZB7 885 aa8.49□□□□□ -1.05
HMGB3P18-201ENST00000406327 GLMNQ92990 594 aa8.49□□□□□ -1.05
HMGB3P18-201ENST00000406327 SEPT9Q9UHD8 586 aaPredicted RBP8.49□□□□□ -1.05
HMGB3P18-201ENST00000406327 NRG2O14511 850 aaPredicted RBP8.48□□□□□ -1.05
HMGB3P18-201ENST00000406327 KCTD17Q8N5Z5 321 aa8.48□□□□□ -1.05
HMGB3P18-201ENST00000406327 TSR3Q9UJK0 312 aaKnown RBP8.48□□□□□ -1.05
HMGB3P18-201ENST00000406327 C6orf229H3BNL8 230 aa8.47□□□□□ -1.05
HMGB3P18-201ENST00000406327 CFHP08603 1231 aa8.47□□□□□ -1.05
HMGB3P18-201ENST00000406327 ATP6V1AP38606 617 aa8.47□□□□□ -1.05
HMGB3P18-201ENST00000406327 PNMA1Q8ND90 353 aa8.47□□□□□ -1.05
HMGB3P18-201ENST00000406327 TSC1Q92574 1164 aa8.47□□□□□ -1.05
HMGB3P18-201ENST00000406327 GJD4Q96KN9 370 aaPredicted RBP8.47□□□□□ -1.05
HMGB3P18-201ENST00000406327 TRAIPQ9BWF2 469 aa8.47□□□□□ -1.05
HMGB3P18-201ENST00000406327 PRR14Q9BWN1 585 aa8.47□□□□□ -1.05
HMGB3P18-201ENST00000406327 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.47□□□□□ -1.05
HMGB3P18-201ENST00000406327 PCDHGC3Q9UN70 934 aa8.47□□□□□ -1.05
HMGB3P18-201ENST00000406327 LRCH3Q96II8 777 aa8.46□□□□□ -1.06
HMGB3P18-201ENST00000406327 HPS5Q9UPZ3 1129 aa8.46□□□□□ -1.06
HMGB3P18-201ENST00000406327 ACIN1Q9UKV3 1341 aaKnown RBP8.46□□□□□ -1.06
HMGB3P18-201ENST00000406327 RNF40O75150 1001 aa8.45□□□□□ -1.06
HMGB3P18-201ENST00000406327 FUT2Q10981 343 aa8.45□□□□□ -1.06
HMGB3P18-201ENST00000406327 Q3C1V9 767 aa8.45□□□□□ -1.06
HMGB3P18-201ENST00000406327 SOX11P35716 441 aa8.44□□□□□ -1.06
HMGB3P18-201ENST00000406327 GUCA2AQ02747 115 aa8.44□□□□□ -1.06
HMGB3P18-201ENST00000406327 CTDSPL2Q05D32 466 aa8.44□□□□□ -1.06
HMGB3P18-201ENST00000406327 SAMD7Q7Z3H4 446 aa8.44□□□□□ -1.06
HMGB3P18-201ENST00000406327 PRKD2Q9BZL6 878 aa8.44□□□□□ -1.06
HMGB3P18-201ENST00000406327 ZNF787Q6DD87 383 aa8.43□□□□□ -1.06
HMGB3P18-201ENST00000406327 POM121CA8CG34 1229 aa8.42□□□□□ -1.06
HMGB3P18-201ENST00000406327 RETREG3Q86VR2 466 aa8.42□□□□□ -1.06
HMGB3P18-201ENST00000406327 CCDC9Q9Y3X0 531 aaKnown RBP8.42□□□□□ -1.06
HMGB3P18-201ENST00000406327 CFAP99D6REC4 459 aa8.41□□□□□ -1.06
HMGB3P18-201ENST00000406327 IRF5Q13568 498 aa8.41□□□□□ -1.06
HMGB3P18-201ENST00000406327 DESI1Q6ICB0 168 aa8.41□□□□□ -1.06
HMGB3P18-201ENST00000406327 HLA-CQ95604 372 aa8.41□□□□□ -1.06
HMGB3P18-201ENST00000406327 TRIM34Q9BYJ4 488 aa8.41□□□□□ -1.06
HMGB3P18-201ENST00000406327 HMX1Q9NP08 348 aaPredicted RBP8.41□□□□□ -1.06
HMGB3P18-201ENST00000406327 V9GY48 417 aaPredicted RBP8.41□□□□□ -1.06
HMGB3P18-201ENST00000406327 PATL2C9JE40 543 aaKnown RBP8.4□□□□□ -1.06
HMGB3P18-201ENST00000406327 RANGAP1P46060 587 aaPredicted RBP8.4□□□□□ -1.06
HMGB3P18-201ENST00000406327 HDGFL1Q5TGJ6 251 aa8.4□□□□□ -1.06
HMGB3P18-201ENST00000406327 PRR7Q8TB68 274 aa8.4□□□□□ -1.06
HMGB3P18-201ENST00000406327 PBXIP1Q96AQ6 731 aa8.4□□□□□ -1.06
HMGB3P18-201ENST00000406327 ACTN4O43707 911 aaKnown RBP8.39□□□□□ -1.07
HMGB3P18-201ENST00000406327 RETREG2Q8NC44 543 aa8.39□□□□□ -1.07
HMGB3P18-201ENST00000406327 LRRN4Q8WUT4 740 aa8.39□□□□□ -1.07
HMGB3P18-201ENST00000406327 PPP4CP60510 307 aa8.38□□□□□ -1.07
HMGB3P18-201ENST00000406327 TJAP1Q5JTD0 557 aa8.37□□□□□ -1.07
HMGB3P18-201ENST00000406327 MORN1Q5T089 497 aa8.37□□□□□ -1.07
HMGB3P18-201ENST00000406327 EIF4G2P78344 907 aaKnown RBP eCLIP8.36□□□□□ -1.07
HMGB3P18-201ENST00000406327 VAC14Q08AM6 782 aa8.36□□□□□ -1.07
HMGB3P18-201ENST00000406327 PPP1R18Q6NYC8 613 aa8.36□□□□□ -1.07
HMGB3P18-201ENST00000406327 ZNF775Q96BV0 537 aaPredicted RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms