RNA–Protein interactions for RNA: ENST00000397163.7

CAPN3-206, Transcript of calpain 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CAPN3, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-206ENST00000397163 GOLGA6L3A6NEY3 463 aa11.64□□□□□ -0.55
CAPN3-206ENST00000397163 TNNT2P45379 298 aaPredicted RBP11.64□□□□□ -0.55
CAPN3-206ENST00000397163 STAC3Q96MF2 364 aa11.64□□□□□ -0.55
CAPN3-206ENST00000397163 TNNQ9UQP3 1299 aa11.64□□□□□ -0.55
CAPN3-206ENST00000397163 MAP3K4Q9Y6R4 1608 aa11.64□□□□□ -0.55
CAPN3-206ENST00000397163 MADDQ8WXG6 1647 aa11.64□□□□□ -0.55
CAPN3-206ENST00000397163 RLBP1P12271 317 aa11.64□□□□□ -0.55
CAPN3-206ENST00000397163 CLCN1P35523 988 aa11.64□□□□□ -0.55
CAPN3-206ENST00000397163 RWDD1Q9H446 243 aaPredicted RBP11.64□□□□□ -0.55
CAPN3-206ENST00000397163 SCAPERQ9BY12 1400 aa11.63□□□□□ -0.55
CAPN3-206ENST00000397163 NLRP1Q9C000 1473 aa11.63□□□□□ -0.55
CAPN3-206ENST00000397163 IQGAP1P46940 1657 aa11.63□□□□□ -0.55
CAPN3-206ENST00000397163 AAMPQ13685 434 aa11.63□□□□□ -0.55
CAPN3-206ENST00000397163 CFAP70Q5T0N1 1121 aa11.63□□□□□ -0.55
CAPN3-206ENST00000397163 PLXNC1O60486 1568 aa11.62□□□□□ -0.55
CAPN3-206ENST00000397163 ERBB4Q15303 1308 aa11.62□□□□□ -0.55
CAPN3-206ENST00000397163 MORC1Q86VD1 984 aa11.62□□□□□ -0.55
CAPN3-206ENST00000397163 CFAP74Q9C0B2 1584 aa11.62□□□□□ -0.55
CAPN3-206ENST00000397163 DIP2BQ9P265 1576 aa11.62□□□□□ -0.55
CAPN3-206ENST00000397163 MCM4P33991 863 aa11.62□□□□□ -0.55
CAPN3-206ENST00000397163 TCP11L2Q8N4U5 519 aa11.62□□□□□ -0.55
CAPN3-206ENST00000397163 RUNDC1Q96C34 613 aa11.62□□□□□ -0.55
CAPN3-206ENST00000397163 CD109Q6YHK3 1445 aa11.61□□□□□ -0.55
CAPN3-206ENST00000397163 EFCAB2Q5VUJ9 269 aa11.61□□□□□ -0.55
CAPN3-206ENST00000397163 POLR3AO14802 1390 aaPredicted RBP11.61□□□□□ -0.55
CAPN3-206ENST00000397163 MFAP1P55081 439 aaKnown RBP11.6□□□□□ -0.55
CAPN3-206ENST00000397163 PLCH2O75038 1416 aa11.6□□□□□ -0.55
CAPN3-206ENST00000397163 VIRMAQ69YN4 1812 aaKnown RBP11.6□□□□□ -0.55
CAPN3-206ENST00000397163 RBM10P98175 930 aaKnown RBP11.59□□□□□ -0.55
CAPN3-206ENST00000397163 FTSJ3Q8IY81 847 aaKnown RBP11.59□□□□□ -0.55
CAPN3-206ENST00000397163 C22orf23Q9BZE7 217 aa11.59□□□□□ -0.55
CAPN3-206ENST00000397163 CHMP5Q9NZZ3 219 aa11.59□□□□□ -0.55
CAPN3-206ENST00000397163 SPAG9O60271 1321 aaKnown RBP11.58□□□□□ -0.56
CAPN3-206ENST00000397163 WDR63Q8IWG1 891 aa11.58□□□□□ -0.56
CAPN3-206ENST00000397163 MYOM1P52179 1685 aa11.58□□□□□ -0.56
CAPN3-206ENST00000397163 KDM5AP29375 1690 aaKnown RBP11.58□□□□□ -0.56
CAPN3-206ENST00000397163 TRAK2O60296 914 aa11.58□□□□□ -0.56
CAPN3-206ENST00000397163 ERVK-7P63135 1459 aa11.58□□□□□ -0.56
CAPN3-206ENST00000397163 ZMYM3Q14202 1370 aa11.58□□□□□ -0.56
CAPN3-206ENST00000397163 KIF13AQ9H1H9 1805 aa11.58□□□□□ -0.56
CAPN3-206ENST00000397163 FSD2A1L4K1 749 aa11.57□□□□□ -0.56
CAPN3-206ENST00000397163 MVPQ14764 893 aaKnown RBP11.57□□□□□ -0.56
CAPN3-206ENST00000397163 TRPM2O94759 1503 aa11.57□□□□□ -0.56
CAPN3-206ENST00000397163 MYH16Q9H6N6 1097 aa11.57□□□□□ -0.56
CAPN3-206ENST00000397163 TRAPPC8Q9Y2L5 1435 aa11.57□□□□□ -0.56
CAPN3-206ENST00000397163 ADGRF5Q8IZF2 1346 aa11.57□□□□□ -0.56
CAPN3-206ENST00000397163 ZKSCAN2Q63HK3 967 aa11.56□□□□□ -0.56
CAPN3-206ENST00000397163 AFAP1Q8N556 730 aa11.56□□□□□ -0.56
CAPN3-206ENST00000397163 ESPNB1AK53 854 aa11.56□□□□□ -0.56
CAPN3-206ENST00000397163 CFAP53Q96M91 514 aa11.56□□□□□ -0.56
CAPN3-206ENST00000397163 PPRC1Q5VV67 1664 aaKnown RBP11.56□□□□□ -0.56
CAPN3-206ENST00000397163 PTPRTO14522 1441 aa11.56□□□□□ -0.56
CAPN3-206ENST00000397163 NSD3Q9BZ95 1437 aa11.56□□□□□ -0.56
CAPN3-206ENST00000397163 HSCBQ8IWL3 235 aa11.56□□□□□ -0.56
CAPN3-206ENST00000397163 ABCC1P33527 1531 aa11.55□□□□□ -0.56
CAPN3-206ENST00000397163 MTHFSP49914 203 aa11.55□□□□□ -0.56
CAPN3-206ENST00000397163 DZIP1LQ8IYY4 767 aaKnown RBP11.55□□□□□ -0.56
CAPN3-206ENST00000397163 SPHKAPQ2M3C7 1700 aa11.55□□□□□ -0.56
CAPN3-206ENST00000397163 SLC12A5Q9H2X9 1139 aa11.55□□□□□ -0.56
CAPN3-206ENST00000397163 PHF23Q9BUL5 403 aaPredicted RBP11.54□□□□□ -0.56
CAPN3-206ENST00000397163 KANK1Q14678 1352 aa11.54□□□□□ -0.56
CAPN3-206ENST00000397163 CLTCL1P53675 1640 aa11.54□□□□□ -0.56
CAPN3-206ENST00000397163 TSPOAP1O95153 1857 aa11.54□□□□□ -0.56
CAPN3-206ENST00000397163 MRE11P49959 708 aa11.54□□□□□ -0.56
CAPN3-206ENST00000397163 NEO1Q92859 1461 aa11.54□□□□□ -0.56
CAPN3-206ENST00000397163 U2AF1L5P0DN76 240 aaPredicted RBP11.54□□□□□ -0.56
CAPN3-206ENST00000397163 U2AF1Q01081 240 aaKnown RBP eCLIP11.54□□□□□ -0.56
CAPN3-206ENST00000397163 FANCAO15360 1455 aa11.53□□□□□ -0.56
CAPN3-206ENST00000397163 KIF3BO15066 747 aa11.53□□□□□ -0.56
CAPN3-206ENST00000397163 TRIM44Q96DX7 344 aaPredicted RBP11.53□□□□□ -0.56
CAPN3-206ENST00000397163 SMC4Q9NTJ3 1288 aa11.53□□□□□ -0.56
CAPN3-206ENST00000397163 DDX11L8A8MPP1 907 aa11.53□□□□□ -0.56
CAPN3-206ENST00000397163 ITPRIPQ8IWB1 547 aa11.53□□□□□ -0.56
CAPN3-206ENST00000397163 TRAK1Q9UPV9 953 aa11.53□□□□□ -0.56
CAPN3-206ENST00000397163 CHGAP10645 457 aaKnown RBP11.52□□□□□ -0.56
CAPN3-206ENST00000397163 CCDC27Q2M243 656 aa11.52□□□□□ -0.56
CAPN3-206ENST00000397163 KIAA1211Q6ZU35 1233 aa11.52□□□□□ -0.57
CAPN3-206ENST00000397163 TSR2Q969E8 191 aaKnown RBP11.52□□□□□ -0.57
CAPN3-206ENST00000397163 CEP152O94986 1710 aa11.52□□□□□ -0.57
CAPN3-206ENST00000397163 GRPEL1Q9HAV7 217 aa11.52□□□□□ -0.57
CAPN3-206ENST00000397163 IQSEC2Q5JU85 1478 aa11.5□□□□□ -0.57
CAPN3-206ENST00000397163 DDX19BQ9UMR2 479 aa11.5□□□□□ -0.57
CAPN3-206ENST00000397163 TRIM27P14373 513 aa11.5□□□□□ -0.57
CAPN3-206ENST00000397163 EXOSC9Q06265 439 aaKnown RBP11.5□□□□□ -0.57
CAPN3-206ENST00000397163 FAM13BQ9NYF5 915 aa11.5□□□□□ -0.57
CAPN3-206ENST00000397163 RTEL1-TNFRSF6BF6WH68 1400 aa11.49□□□□□ -0.57
CAPN3-206ENST00000397163 HDAC1Q13547 482 aaPredicted RBP11.49□□□□□ -0.57
CAPN3-206ENST00000397163 PDCL3Q9H2J4 239 aa11.49□□□□□ -0.57
CAPN3-206ENST00000397163 PRDM10Q9NQV6 1147 aa11.49□□□□□ -0.57
CAPN3-206ENST00000397163 PRDM4Q9UKN5 801 aa11.49□□□□□ -0.57
CAPN3-206ENST00000397163 HSP90AB1P08238 724 aaKnown RBP11.49□□□□□ -0.57
CAPN3-206ENST00000397163 SBNO2Q9Y2G9 1366 aa11.48□□□□□ -0.57
CAPN3-206ENST00000397163 SSH1Q8WYL5 1049 aa11.48□□□□□ -0.57
CAPN3-206ENST00000397163 ADGRL1O94910 1474 aa11.48□□□□□ -0.57
CAPN3-206ENST00000397163 U2SURPO15042 1029 aaKnown RBP11.48□□□□□ -0.57
CAPN3-206ENST00000397163 CT47B1P0C2W7 299 aaPredicted RBP11.48□□□□□ -0.57
CAPN3-206ENST00000397163 ATF7IPQ6VMQ6 1270 aa11.48□□□□□ -0.57
CAPN3-206ENST00000397163 ZNF692Q9BU19 519 aaPredicted RBP11.48□□□□□ -0.57
CAPN3-206ENST00000397163 ZHX1Q9UKY1 873 aaPredicted RBP11.48□□□□□ -0.57
CAPN3-206ENST00000397163 UGGT1Q9NYU2 1555 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms