RNA–Protein interactions for RNA: ENST00000392455.7

CCDC50-201, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CCDC50, Length 8,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-201ENST00000392455 PRDM2Q13029 1718 aa17.7■□□□□ 0.42
CCDC50-201ENST00000392455 AAMPQ13685 434 aa17.7■□□□□ 0.42
CCDC50-201ENST00000392455 IFT57Q9NWB7 429 aa17.69■□□□□ 0.42
CCDC50-201ENST00000392455 STAMBPO95630 424 aa17.69■□□□□ 0.42
CCDC50-201ENST00000392455 FILIP1LQ4L180 1135 aa17.69■□□□□ 0.42
CCDC50-201ENST00000392455 CCDC91Q7Z6B0 441 aa17.69■□□□□ 0.42
CCDC50-201ENST00000392455 TDRD9Q8NDG6 1382 aaKnown RBP17.69■□□□□ 0.42
CCDC50-201ENST00000392455 SLC26A8Q96RN1 970 aa17.69■□□□□ 0.42
CCDC50-201ENST00000392455 L3MBTL2Q969R5 705 aa17.68■□□□□ 0.42
CCDC50-201ENST00000392455 TXLNAP40222 546 aa17.68■□□□□ 0.42
CCDC50-201ENST00000392455 BICD2Q8TD16 824 aa17.68■□□□□ 0.42
CCDC50-201ENST00000392455 ELL2O00472 640 aaPredicted RBP17.68■□□□□ 0.42
CCDC50-201ENST00000392455 WIZO95785 1651 aa17.68■□□□□ 0.42
CCDC50-201ENST00000392455 COG3Q96JB2 828 aa17.67■□□□□ 0.42
CCDC50-201ENST00000392455 HMGB1P1B2RPK0 211 aaPredicted RBP17.67■□□□□ 0.42
CCDC50-201ENST00000392455 BCL2L13Q9BXK5 485 aa17.67■□□□□ 0.42
CCDC50-201ENST00000392455 CCDC112Q8NEF3 446 aa17.67■□□□□ 0.42
CCDC50-201ENST00000392455 ZNHIT6Q9NWK9 470 aaKnown RBP17.67■□□□□ 0.42
CCDC50-201ENST00000392455 HSP90AB3PQ58FF7 597 aa17.67■□□□□ 0.42
CCDC50-201ENST00000392455 CFAP57Q96MR6 1250 aa17.67■□□□□ 0.42
CCDC50-201ENST00000392455 ERLIN1O75477 346 aa17.66■□□□□ 0.42
CCDC50-201ENST00000392455 FAM13BQ9NYF5 915 aa17.66■□□□□ 0.42
CCDC50-201ENST00000392455 ENOX2Q16206 610 aaKnown RBP17.66■□□□□ 0.42
CCDC50-201ENST00000392455 FAM161AQ3B820 660 aa17.65■□□□□ 0.42
CCDC50-201ENST00000392455 VPS37DQ86XT2 251 aa17.65■□□□□ 0.42
CCDC50-201ENST00000392455 MAGEC2Q9UBF1 373 aaPredicted RBP17.65■□□□□ 0.42
CCDC50-201ENST00000392455 PANK3Q9H999 370 aa17.65■□□□□ 0.42
CCDC50-201ENST00000392455 CCDC144AA2RUR9 1427 aa17.64■□□□□ 0.41
CCDC50-201ENST00000392455 MYBBP1AQ9BQG0 1328 aaKnown RBP17.64■□□□□ 0.41
CCDC50-201ENST00000392455 AXDND1Q5T1B0 1012 aaPredicted RBP17.64■□□□□ 0.41
CCDC50-201ENST00000392455 FHOD3Q2V2M9 1422 aa17.64■□□□□ 0.41
CCDC50-201ENST00000392455 UACAQ9BZF9 1416 aa17.64■□□□□ 0.41
CCDC50-201ENST00000392455 TTC5Q8N0Z6 440 aa17.64■□□□□ 0.41
CCDC50-201ENST00000392455 EIF2S2P20042 333 aaKnown RBP17.63■□□□□ 0.41
CCDC50-201ENST00000392455 PDCP20941 246 aa17.63■□□□□ 0.41
CCDC50-201ENST00000392455 C9orf78Q9NZ63 289 aaPredicted RBP17.63■□□□□ 0.41
CCDC50-201ENST00000392455 FBXW7Q969H0 707 aa17.62■□□□□ 0.41
CCDC50-201ENST00000392455 PLCD4Q9BRC7 762 aa17.62■□□□□ 0.41
CCDC50-201ENST00000392455 TEFQ10587 303 aa17.62■□□□□ 0.41
CCDC50-201ENST00000392455 HMGB1P09429 215 aaKnown RBP17.62■□□□□ 0.41
CCDC50-201ENST00000392455 NECTIN2Q92692 538 aa17.62■□□□□ 0.41
CCDC50-201ENST00000392455 FAM107BQ9H098 131 aa17.62■□□□□ 0.41
CCDC50-201ENST00000392455 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.62■□□□□ 0.41
CCDC50-201ENST00000392455 HSP90AB4PQ58FF6 505 aa17.61■□□□□ 0.41
CCDC50-201ENST00000392455 PLIN1O60240 522 aa17.61■□□□□ 0.41
CCDC50-201ENST00000392455 EVC2Q86UK5 1308 aa17.61■□□□□ 0.41
CCDC50-201ENST00000392455 NINLQ9Y2I6 1382 aa17.6■□□□□ 0.41
CCDC50-201ENST00000392455 STIM1Q13586 685 aa17.6■□□□□ 0.41
CCDC50-201ENST00000392455 GOLGA6L10A0A0M3HER8 536 aa17.6■□□□□ 0.41
CCDC50-201ENST00000392455 SYTL4Q96C24 671 aaPredicted RBP17.6■□□□□ 0.41
CCDC50-201ENST00000392455 RSPH4AQ5TD94 716 aa17.6■□□□□ 0.41
CCDC50-201ENST00000392455 DHX16O60231 1041 aaKnown RBP17.6■□□□□ 0.41
CCDC50-201ENST00000392455 CCAR1Q8IX12 1150 aaKnown RBP17.6■□□□□ 0.41
CCDC50-201ENST00000392455 DDX58O95786 925 aaKnown RBP17.59■□□□□ 0.41
CCDC50-201ENST00000392455 MEX3CQ5U5Q3 659 aaKnown RBP17.59■□□□□ 0.41
CCDC50-201ENST00000392455 ERC2O15083 957 aa17.59■□□□□ 0.41
CCDC50-201ENST00000392455 PDIA4P13667 645 aaKnown RBP17.59■□□□□ 0.41
CCDC50-201ENST00000392455 SART3Q15020 963 aaKnown RBP17.59■□□□□ 0.41
CCDC50-201ENST00000392455 NFXL1Q6ZNB6 911 aa17.59■□□□□ 0.41
CCDC50-201ENST00000392455 DACH1Q9UI36 760 aa17.59■□□□□ 0.41
CCDC50-201ENST00000392455 ZKSCAN2Q63HK3 967 aa17.59■□□□□ 0.41
CCDC50-201ENST00000392455 ANO2Q9NQ90 1003 aa17.59■□□□□ 0.41
CCDC50-201ENST00000392455 MROH2BQ7Z745 1585 aa17.59■□□□□ 0.41
CCDC50-201ENST00000392455 PSMA5P28066 241 aa17.58■□□□□ 0.41
CCDC50-201ENST00000392455 POLR3GO15318 223 aaPredicted RBP17.58■□□□□ 0.41
CCDC50-201ENST00000392455 ST20-MTHFSA0A0A6YYL1 179 aa17.58■□□□□ 0.4
CCDC50-201ENST00000392455 MCM3P25205 808 aa17.58■□□□□ 0.4
CCDC50-201ENST00000392455 ANKRD18BA2A2Z9 1011 aa17.58■□□□□ 0.4
CCDC50-201ENST00000392455 SLC3A2P08195 630 aaKnown RBP17.57■□□□□ 0.4
CCDC50-201ENST00000392455 GIMAP7Q8NHV1 300 aa17.57■□□□□ 0.4
CCDC50-201ENST00000392455 DDX11Q96FC9 970 aa17.57■□□□□ 0.4
CCDC50-201ENST00000392455 RALYLQ86SE5 291 aaKnown RBP17.57■□□□□ 0.4
CCDC50-201ENST00000392455 GRIPAP1Q4V328 841 aa17.57■□□□□ 0.4
CCDC50-201ENST00000392455 MBD3O95983 291 aa17.57■□□□□ 0.4
CCDC50-201ENST00000392455 JMYQ8N9B5 988 aa17.57■□□□□ 0.4
CCDC50-201ENST00000392455 SMC3Q9UQE7 1217 aa17.57■□□□□ 0.4
CCDC50-201ENST00000392455 DCAF8L1A6NGE4 600 aa17.57■□□□□ 0.4
CCDC50-201ENST00000392455 E9PSI1 815 aa17.57■□□□□ 0.4
CCDC50-201ENST00000392455 RAPGEF2Q9Y4G8 1499 aa17.56■□□□□ 0.4
CCDC50-201ENST00000392455 MCM2P49736 904 aa17.56■□□□□ 0.4
CCDC50-201ENST00000392455 MINK1Q8N4C8 1332 aaPredicted RBP17.56■□□□□ 0.4
CCDC50-201ENST00000392455 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.56■□□□□ 0.4
CCDC50-201ENST00000392455 IFIT2P09913 472 aaKnown RBP17.55■□□□□ 0.4
CCDC50-201ENST00000392455 KINO60870 393 aaKnown RBP17.55■□□□□ 0.4
CCDC50-201ENST00000392455 SLC4A3P48751 1232 aa17.55■□□□□ 0.4
CCDC50-201ENST00000392455 ANKRD62A6NC57 917 aa17.55■□□□□ 0.4
CCDC50-201ENST00000392455 CRBNQ96SW2 442 aa17.55■□□□□ 0.4
CCDC50-201ENST00000392455 INTS3Q68E01 1043 aaKnown RBP17.55■□□□□ 0.4
CCDC50-201ENST00000392455 CDK5RAP3Q96JB5 506 aa17.55■□□□□ 0.4
CCDC50-201ENST00000392455 PDCL2Q8N4E4 241 aa17.55■□□□□ 0.4
CCDC50-201ENST00000392455 TSHZ2Q9NRE2 1034 aa17.55■□□□□ 0.4
CCDC50-201ENST00000392455 CETN2P41208 172 aa17.54■□□□□ 0.4
CCDC50-201ENST00000392455 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.54■□□□□ 0.4
CCDC50-201ENST00000392455 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.54■□□□□ 0.4
CCDC50-201ENST00000392455 V9GYY5 206 aaPredicted RBP17.54■□□□□ 0.4
CCDC50-201ENST00000392455 PSME1Q06323 249 aa17.53■□□□□ 0.4
CCDC50-201ENST00000392455 CCDC181Q5TID7 509 aa17.52■□□□□ 0.4
CCDC50-201ENST00000392455 COG6Q9Y2V7 657 aa17.52■□□□□ 0.4
CCDC50-201ENST00000392455 VGFO15240 615 aaPredicted RBP17.52■□□□□ 0.4
CCDC50-201ENST00000392455 HMGB2P26583 209 aaKnown RBP17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms