RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 PRKRIP1Q9H875 184 aaPredicted RBP17.44■□□□□ 0.38
TRAF1-201ENST00000373887 DIAPH3Q9NSV4 1193 aa17.44■□□□□ 0.38
TRAF1-201ENST00000373887 SCAPERQ9BY12 1400 aa17.44■□□□□ 0.38
TRAF1-201ENST00000373887 AMOTL1Q8IY63 956 aa17.44■□□□□ 0.38
TRAF1-201ENST00000373887 NCAPD3P42695 1498 aa17.44■□□□□ 0.38
TRAF1-201ENST00000373887 SNAPC4Q5SXM2 1469 aa17.44■□□□□ 0.38
TRAF1-201ENST00000373887 PDE3BQ13370 1112 aa17.43■□□□□ 0.38
TRAF1-201ENST00000373887 EXOC6Q8TAG9 804 aa17.43■□□□□ 0.38
TRAF1-201ENST00000373887 NCOA2Q15596 1464 aa17.43■□□□□ 0.38
TRAF1-201ENST00000373887 NEUROD6Q96NK8 337 aa17.42■□□□□ 0.38
TRAF1-201ENST00000373887 CUX1P39880 1505 aa17.42■□□□□ 0.38
TRAF1-201ENST00000373887 DDX54Q8TDD1 881 aaKnown RBP17.42■□□□□ 0.38
TRAF1-201ENST00000373887 CWC22Q9HCG8 908 aaKnown RBP17.42■□□□□ 0.38
TRAF1-201ENST00000373887 IPO7O95373 1038 aaKnown RBP17.42■□□□□ 0.38
TRAF1-201ENST00000373887 ANO2Q9NQ90 1003 aa17.42■□□□□ 0.38
TRAF1-201ENST00000373887 TRIM29Q14134 588 aa17.41■□□□□ 0.38
TRAF1-201ENST00000373887 GSE1Q14687 1217 aa17.41■□□□□ 0.38
TRAF1-201ENST00000373887 MTMR7Q9Y216 660 aa17.41■□□□□ 0.38
TRAF1-201ENST00000373887 G3BP1Q13283 466 aaKnown RBP eCLIP17.41■□□□□ 0.38
TRAF1-201ENST00000373887 TEX35Q5T0J7 233 aa17.41■□□□□ 0.38
TRAF1-201ENST00000373887 ATP6V1DQ9Y5K8 247 aa17.41■□□□□ 0.38
TRAF1-201ENST00000373887 NAP1L1P55209 391 aaKnown RBP17.41■□□□□ 0.38
TRAF1-201ENST00000373887 CCDC27Q2M243 656 aa17.41■□□□□ 0.38
TRAF1-201ENST00000373887 MIA2Q96PC5 1412 aa17.39■□□□□ 0.38
TRAF1-201ENST00000373887 SKOR2Q2VWA4 1001 aaPredicted RBP17.39■□□□□ 0.37
TRAF1-201ENST00000373887 BICD2Q8TD16 824 aa17.39■□□□□ 0.37
TRAF1-201ENST00000373887 RUNDC1Q96C34 613 aa17.39■□□□□ 0.37
TRAF1-201ENST00000373887 KDM4AO75164 1064 aa17.38■□□□□ 0.37
TRAF1-201ENST00000373887 THEMISQ8N1K5 641 aaPredicted RBP17.38■□□□□ 0.37
TRAF1-201ENST00000373887 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.38■□□□□ 0.375e-14■■■■■ 211.5
TRAF1-201ENST00000373887 TOM1L2Q6ZVM7 507 aa17.38■□□□□ 0.37
TRAF1-201ENST00000373887 RUFY1Q96T51 708 aa17.38■□□□□ 0.37
TRAF1-201ENST00000373887 SF3B2Q13435 895 aaKnown RBP17.37■□□□□ 0.37
TRAF1-201ENST00000373887 LRRC9Q6ZRR7 1453 aa17.37■□□□□ 0.37
TRAF1-201ENST00000373887 FAM161AQ3B820 660 aa17.37■□□□□ 0.37
TRAF1-201ENST00000373887 ANKRD20A12PQ8NF67 263 aa17.37■□□□□ 0.37
TRAF1-201ENST00000373887 KIF21BO75037 1637 aa17.37■□□□□ 0.37
TRAF1-201ENST00000373887 CCDC47Q96A33 483 aaKnown RBP17.37■□□□□ 0.37
TRAF1-201ENST00000373887 PDE4AP27815 886 aa17.36■□□□□ 0.37
TRAF1-201ENST00000373887 MTHFSP49914 203 aa17.36■□□□□ 0.37
TRAF1-201ENST00000373887 CDK19Q9BWU1 502 aa17.36■□□□□ 0.37
TRAF1-201ENST00000373887 CFTRP13569 1480 aa17.36■□□□□ 0.37
TRAF1-201ENST00000373887 IFT140Q96RY7 1462 aa17.36■□□□□ 0.37
TRAF1-201ENST00000373887 RRP1P56182 461 aaKnown RBP17.35■□□□□ 0.37
TRAF1-201ENST00000373887 DZIP1LQ8IYY4 767 aaKnown RBP17.35■□□□□ 0.37
TRAF1-201ENST00000373887 NFXL1Q6ZNB6 911 aa17.35■□□□□ 0.37
TRAF1-201ENST00000373887 CPLX1O14810 134 aa17.34■□□□□ 0.37
TRAF1-201ENST00000373887 NBPF1Q3BBV0 1214 aa17.34■□□□□ 0.37
TRAF1-201ENST00000373887 KIF7Q2M1P5 1343 aa17.34■□□□□ 0.37
TRAF1-201ENST00000373887 DCAF8L1A6NGE4 600 aa17.34■□□□□ 0.37
TRAF1-201ENST00000373887 CENPQQ7L2Z9 268 aaPredicted RBP17.34■□□□□ 0.37
TRAF1-201ENST00000373887 ANKLE2Q86XL3 938 aa17.33■□□□□ 0.37
TRAF1-201ENST00000373887 FYCO1Q9BQS8 1478 aa17.33■□□□□ 0.37
TRAF1-201ENST00000373887 AK7Q96M32 723 aa17.33■□□□□ 0.37
TRAF1-201ENST00000373887 CABP1Q9NZU7 370 aa17.33■□□□□ 0.37
TRAF1-201ENST00000373887 GNAI1P63096 354 aa17.33■□□□□ 0.36
TRAF1-201ENST00000373887 CT47A1Q5JQC4 288 aaPredicted RBP17.33■□□□□ 0.36
TRAF1-201ENST00000373887 SKIDA1Q1XH10 827 aa17.33■□□□□ 0.36
TRAF1-201ENST00000373887 WASHC4Q2M389 1173 aa17.33■□□□□ 0.36
TRAF1-201ENST00000373887 DNAJC5BQ9UF47 199 aa17.33■□□□□ 0.36
TRAF1-201ENST00000373887 CASKIN1Q8WXD9 1431 aa17.33■□□□□ 0.36
TRAF1-201ENST00000373887 CPLX2Q6PUV4 134 aaKnown RBP17.32■□□□□ 0.36
TRAF1-201ENST00000373887 API5Q9BZZ5 524 aaKnown RBP17.32■□□□□ 0.36
TRAF1-201ENST00000373887 VPS37CA5D8V6 355 aaPredicted RBP17.32■□□□□ 0.36
TRAF1-201ENST00000373887 CCDC43Q96MW1 224 aaKnown RBP17.32■□□□□ 0.36
TRAF1-201ENST00000373887 IFT57Q9NWB7 429 aa17.32■□□□□ 0.36
TRAF1-201ENST00000373887 DDX19BQ9UMR2 479 aa17.31■□□□□ 0.36
TRAF1-201ENST00000373887 KIF6Q6ZMV9 814 aa17.31■□□□□ 0.36
TRAF1-201ENST00000373887 LRRFIP1Q32MZ4 808 aaKnown RBP17.31■□□□□ 0.36
TRAF1-201ENST00000373887 MNS1Q8NEH6 495 aa17.3■□□□□ 0.36
TRAF1-201ENST00000373887 SYNJ1O43426 1573 aa17.3■□□□□ 0.36
TRAF1-201ENST00000373887 CHMP4CQ96CF2 233 aa17.3■□□□□ 0.36
TRAF1-201ENST00000373887 PRKAR2BP31323 418 aa17.3■□□□□ 0.36
TRAF1-201ENST00000373887 ODF2Q5BJF6 829 aa17.3■□□□□ 0.36
TRAF1-201ENST00000373887 MAP7D2Q96T17 732 aa17.3■□□□□ 0.36
TRAF1-201ENST00000373887 TATP17735 454 aaPredicted RBP17.3■□□□□ 0.36
TRAF1-201ENST00000373887 SLC12A5Q9H2X9 1139 aa17.3■□□□□ 0.36
TRAF1-201ENST00000373887 ZFYVE27Q5T4F4 411 aa17.3■□□□□ 0.36
TRAF1-201ENST00000373887 TTLL5Q6EMB2 1281 aa17.3■□□□□ 0.36
TRAF1-201ENST00000373887 SASS6Q6UVJ0 657 aa17.3■□□□□ 0.36
TRAF1-201ENST00000373887 HOOK1Q9UJC3 728 aaKnown RBP17.3■□□□□ 0.36
TRAF1-201ENST00000373887 TOPBP1Q92547 1522 aa17.3■□□□□ 0.36
TRAF1-201ENST00000373887 RRBP1Q9P2E9 1410 aaKnown RBP17.29■□□□□ 0.36
TRAF1-201ENST00000373887 ZKSCAN1P17029 563 aaPredicted RBP17.29■□□□□ 0.36
TRAF1-201ENST00000373887 PLEKHO1Q53GL0 409 aaPredicted RBP17.29■□□□□ 0.36
TRAF1-201ENST00000373887 PANK1Q8TE04 598 aa17.29■□□□□ 0.36
TRAF1-201ENST00000373887 CABP4P57796 275 aa17.29■□□□□ 0.36
TRAF1-201ENST00000373887 RUFY2Q8WXA3 655 aa17.28■□□□□ 0.36
TRAF1-201ENST00000373887 UBTFL1P0CB47 393 aaPredicted RBP17.28■□□□□ 0.36
TRAF1-201ENST00000373887 ZC3H6P61129 1189 aaKnown RBP17.28■□□□□ 0.36
TRAF1-201ENST00000373887 TRDNQ13061 729 aa17.28■□□□□ 0.36
TRAF1-201ENST00000373887 C9orf84Q5VXU9 1444 aa17.28■□□□□ 0.36
TRAF1-201ENST00000373887 HSP90AB2PQ58FF8 381 aa17.28■□□□□ 0.36
TRAF1-201ENST00000373887 LNPKQ9C0E8 428 aa17.28■□□□□ 0.36
TRAF1-201ENST00000373887 SMG6Q86US8 1419 aaKnown RBP17.28■□□□□ 0.36
TRAF1-201ENST00000373887 PDILTQ8N807 584 aa17.27■□□□□ 0.36
TRAF1-201ENST00000373887 MYL6BP14649 208 aa17.27■□□□□ 0.36
TRAF1-201ENST00000373887 CDR1P51861 262 aa17.27■□□□□ 0.36
TRAF1-201ENST00000373887 ADAMTS8Q9UP79 889 aa17.27■□□□□ 0.36
TRAF1-201ENST00000373887 RRS1Q15050 365 aaKnown RBP17.27■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms