RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 USP47Q96K76 1375 aa14.76□□□□□ -0.05
RTN3-201ENST00000338850 PHLPP1O60346 1717 aa14.76□□□□□ -0.05
RTN3-201ENST00000338850 DCCP43146 1447 aa14.75□□□□□ -0.05
RTN3-201ENST00000338850 JCADQ9P266 1359 aa14.75□□□□□ -0.05
RTN3-201ENST00000338850 COL16A1Q07092 1604 aaPredicted RBP14.75□□□□□ -0.05
RTN3-201ENST00000338850 KIF1BO60333 1816 aa14.74□□□□□ -0.05
RTN3-201ENST00000338850 AHDC1Q5TGY3 1603 aaPredicted RBP14.74□□□□□ -0.05
RTN3-201ENST00000338850 HNRNPUQ00839 825 aaKnown RBP eCLIP14.72□□□□□ -0.05
RTN3-201ENST00000338850 BRINP3Q76B58 766 aa14.72□□□□□ -0.05
RTN3-201ENST00000338850 RPGRIP1LQ68CZ1 1315 aa14.71□□□□□ -0.05
RTN3-201ENST00000338850 VGFO15240 615 aaPredicted RBP14.71□□□□□ -0.05
RTN3-201ENST00000338850 POTEAQ6S8J7 498 aa14.71□□□□□ -0.05
RTN3-201ENST00000338850 MST1RQ04912 1400 aa14.71□□□□□ -0.05
RTN3-201ENST00000338850 ADGRL3Q9HAR2 1447 aa14.71□□□□□ -0.05
RTN3-201ENST00000338850 GPRASP1Q5JY77 1395 aa14.71□□□□□ -0.06
RTN3-201ENST00000338850 C11orf95C9JLR9 678 aaPredicted RBP14.7□□□□□ -0.06
RTN3-201ENST00000338850 FOXD1Q16676 465 aa14.7□□□□□ -0.06
RTN3-201ENST00000338850 INSRP06213 1382 aa14.7□□□□□ -0.06
RTN3-201ENST00000338850 SETD1AO15047 1707 aaKnown RBP14.69□□□□□ -0.06
RTN3-201ENST00000338850 SPATA31A6Q5VVP1 1343 aa14.68□□□□□ -0.06
RTN3-201ENST00000338850 PTCH1Q13635 1447 aa14.68□□□□□ -0.06
RTN3-201ENST00000338850 SMG6Q86US8 1419 aaKnown RBP14.68□□□□□ -0.06
RTN3-201ENST00000338850 ASXL1Q8IXJ9 1541 aa14.68□□□□□ -0.06
RTN3-201ENST00000338850 LRP6O75581 1613 aa14.68□□□□□ -0.06
RTN3-201ENST00000338850 PRAG1Q86YV5 1406 aa14.67□□□□□ -0.06
RTN3-201ENST00000338850 PPLO60437 1756 aa14.66□□□□□ -0.06
RTN3-201ENST00000338850 ROBO2Q9HCK4 1378 aa14.66□□□□□ -0.06
RTN3-201ENST00000338850 NALCNQ8IZF0 1738 aa14.66□□□□□ -0.06
RTN3-201ENST00000338850 CCDC144AA2RUR9 1427 aa14.66□□□□□ -0.06
RTN3-201ENST00000338850 SHPRHQ149N8 1683 aa14.65□□□□□ -0.06
RTN3-201ENST00000338850 MRS2Q9HD23 443 aa14.64□□□□□ -0.07
RTN3-201ENST00000338850 NHSL1Q5SYE7 1610 aa14.63□□□□□ -0.07
RTN3-201ENST00000338850 ADGRF5Q8IZF2 1346 aa14.63□□□□□ -0.07
RTN3-201ENST00000338850 C1orf167Q5SNV9 1468 aa14.63□□□□□ -0.07
RTN3-201ENST00000338850 BRD4O60885 1362 aaPredicted RBP14.62□□□□□ -0.07
RTN3-201ENST00000338850 LRPPRCP42704 1394 aaKnown RBP14.62□□□□□ -0.07
RTN3-201ENST00000338850 RNF123Q5XPI4 1314 aa14.62□□□□□ -0.07
RTN3-201ENST00000338850 RGL3Q3MIN7 710 aa14.61□□□□□ -0.07
RTN3-201ENST00000338850 MEX3CQ5U5Q3 659 aaKnown RBP14.61□□□□□ -0.07
RTN3-201ENST00000338850 DDX17Q92841 729 aaKnown RBP14.61□□□□□ -0.07
RTN3-201ENST00000338850 PPP4R2Q9NY27 417 aa14.61□□□□□ -0.07
RTN3-201ENST00000338850 LRRC59Q96AG4 307 aaKnown RBP14.6□□□□□ -0.07
RTN3-201ENST00000338850 KIAA1210Q9ULL0 1709 aa14.6□□□□□ -0.07
RTN3-201ENST00000338850 PNPLA6Q8IY17 1366 aa14.59□□□□□ -0.07
RTN3-201ENST00000338850 NUTM2BA6NNL0 878 aaPredicted RBP14.58□□□□□ -0.08
RTN3-201ENST00000338850 NUTM2EB1AL46 878 aaPredicted RBP14.58□□□□□ -0.08
RTN3-201ENST00000338850 RALBP1Q15311 655 aa14.58□□□□□ -0.08
RTN3-201ENST00000338850 ZNF772Q68DY9 489 aaPredicted RBP14.58□□□□□ -0.08
RTN3-201ENST00000338850 NUTM2AQ8IVF1 878 aaPredicted RBP14.58□□□□□ -0.08
RTN3-201ENST00000338850 FANCIQ9NVI1 1328 aa14.58□□□□□ -0.08
RTN3-201ENST00000338850 IFT172Q9UG01 1749 aa14.58□□□□□ -0.08
RTN3-201ENST00000338850 TECPR2O15040 1411 aa14.58□□□□□ -0.08
RTN3-201ENST00000338850 CCDC184Q52MB2 194 aa14.57□□□□□ -0.08
RTN3-201ENST00000338850 ORAI2Q96SN7 254 aa14.57□□□□□ -0.08
RTN3-201ENST00000338850 ANP32EQ9BTT0 268 aa14.57□□□□□ -0.08
RTN3-201ENST00000338850 PIK3C2GO75747 1445 aa14.57□□□□□ -0.08
RTN3-201ENST00000338850 STAC3Q96MF2 364 aa14.56□□□□□ -0.08
RTN3-201ENST00000338850 CDC42BPGQ6DT37 1551 aa14.56□□□□□ -0.08
RTN3-201ENST00000338850 CARD11Q9BXL7 1154 aa14.55□□□□□ -0.08
RTN3-201ENST00000338850 RBM19Q9Y4C8 960 aaKnown RBP14.55□□□□□ -0.08
RTN3-201ENST00000338850 SOS2Q07890 1332 aaPredicted RBP14.55□□□□□ -0.08
RTN3-201ENST00000338850 PARD3Q8TEW0 1356 aa14.55□□□□□ -0.08
RTN3-201ENST00000338850 ABCC11Q96J66 1382 aa14.55□□□□□ -0.08
RTN3-201ENST00000338850 STK26Q9P289 416 aa14.54□□□□□ -0.08
RTN3-201ENST00000338850 NUDCQ9Y266 331 aa14.54□□□□□ -0.08
RTN3-201ENST00000338850 MYBBP1AQ9BQG0 1328 aaKnown RBP14.54□□□□□ -0.08
RTN3-201ENST00000338850 AFF2P51816 1311 aa14.53□□□□□ -0.08
RTN3-201ENST00000338850 TMEM132EQ6IEE7 984 aa14.53□□□□□ -0.08
RTN3-201ENST00000338850 WAPLQ7Z5K2 1190 aa14.53□□□□□ -0.08
RTN3-201ENST00000338850 NRXN1Q9ULB1 1477 aa14.52□□□□□ -0.08
RTN3-201ENST00000338850 PLEKHH1Q9ULM0 1364 aa14.52□□□□□ -0.08
RTN3-201ENST00000338850 MYOM2P54296 1465 aa14.51□□□□□ -0.09
RTN3-201ENST00000338850 YTHDC2Q9H6S0 1430 aaKnown RBP14.51□□□□□ -0.09
RTN3-201ENST00000338850 PNISRQ8TF01 805 aaKnown RBP14.51□□□□□ -0.09
RTN3-201ENST00000338850 KNDC1Q76NI1 1749 aa14.51□□□□□ -0.09
RTN3-201ENST00000338850 RXRBP28702 533 aa14.5□□□□□ -0.09
RTN3-201ENST00000338850 FAM9BQ8IZU0 186 aa14.5□□□□□ -0.09
RTN3-201ENST00000338850 C8orf37Q96NL8 207 aa14.5□□□□□ -0.09
RTN3-201ENST00000338850 C14orf93Q9H972 538 aaKnown RBP14.5□□□□□ -0.09
RTN3-201ENST00000338850 ESCO1Q5FWF5 840 aa14.49□□□□□ -0.09
RTN3-201ENST00000338850 NPHP3Q7Z494 1330 aa14.48□□□□□ -0.09
RTN3-201ENST00000338850 CFAP70Q5T0N1 1121 aa14.48□□□□□ -0.09
RTN3-201ENST00000338850 SIRT1Q96EB6 747 aa14.48□□□□□ -0.09
RTN3-201ENST00000338850 PXDNQ92626 1479 aa14.48□□□□□ -0.09
RTN3-201ENST00000338850 CDK12Q9NYV4 1490 aaPredicted RBP14.48□□□□□ -0.09
RTN3-201ENST00000338850 NUTM2FA1L443 756 aa14.47□□□□□ -0.09
RTN3-201ENST00000338850 ADAMTS2O95450 1211 aa14.47□□□□□ -0.09
RTN3-201ENST00000338850 PDE3BQ13370 1112 aa14.47□□□□□ -0.09
RTN3-201ENST00000338850 BLMP54132 1417 aaPredicted RBP14.47□□□□□ -0.09
RTN3-201ENST00000338850 COL22A1Q8NFW1 1626 aaPredicted RBP14.46□□□□□ -0.09
RTN3-201ENST00000338850 FOXO3O43524 673 aa14.46□□□□□ -0.09
RTN3-201ENST00000338850 NLRP13Q86W25 1043 aa14.46□□□□□ -0.09
RTN3-201ENST00000338850 ST20-MTHFSA0A0A6YYL1 179 aa14.45□□□□□ -0.1
RTN3-201ENST00000338850 XPCQ01831 940 aaPredicted RBP14.45□□□□□ -0.1
RTN3-201ENST00000338850 DCAF11Q8TEB1 546 aa14.45□□□□□ -0.1
RTN3-201ENST00000338850 NGLY1Q96IV0 654 aa14.45□□□□□ -0.1
RTN3-201ENST00000338850 QTRT2Q9H974 415 aaKnown RBP14.45□□□□□ -0.1
RTN3-201ENST00000338850 FMN2Q9NZ56 1722 aa14.45□□□□□ -0.1
RTN3-201ENST00000338850 RBM6P78332 1123 aaKnown RBP14.43□□□□□ -0.1
RTN3-201ENST00000338850 UPF1Q92900 1129 aaKnown RBP eCLIP14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms